MSTRG.15339.1.p2 (mRNA) -

Overview
NameMSTRG.15339.1.p2
Unique NameMSTRG.15339.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000134_pilon:821873..830823-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15339.1.p2 ID=MSTRG.15339.1.p2|Name=MSTRG.15339.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8951bp|location=Sequence derived from alignment at sc0000134_pilon:821873..830823- (Clytia hemisphaerica_ch_hm2_pilon)
GCTGTCTTGATTGTAATCATTTTGAAGAATAGAAGATGTGAAAAGAGGAA
AATGAAGAAAAAGAAGAAGGAAAGTGATAATAAAGAAAAAACATAAAAAT
TTCGTGTTTTTGTATGGGTAGTTGTAAGGTCTTGTAAAAAAAATTATTTA
TTTGGTCGCCACTGAGACGAGAAGTAGAAGCTGAAGAAATTGAAGATTCA
AAACATTTTCATAAAAACCAAAAGATGAACTGCTAACTTTCTGTATTCTT
CTACGATCATCCTTAGTTGCGCGACCACAAAATTCTCTCAAAAATTAATG
AATGAAAAAAGAATCAAAAAAAGAAGAAATAAATCAAAACTTTCTTCTTC
GGCATGGAATCTTCTTCAATCTATCATACCGAAGATCGGGATAGGAGCGG
CGGAGATCTATCCGATGCAAGGACACTTATTCAGAGTAAGTATAGAGGGA
CATCTCATGCATCCATCATTTACCAAAAGGAACCATCAATCAATCTTCAG
ACTTCCTTAGAGATCTGCCATTAATAAATGATTAAACTTTTTGTCAGTTA
TAATGACCCCCATTGACAATAACACACATAGAAACAGTCCTAATTTAATT
TTTTTTAGCATTAAATTGTTACTTTTAAACTTAAAACTGTTATAAAAGCT
CCTAACTTATTTATTTTAGTTTATAGCTGGTATGATAAATCAGTGGATAT
CTTCAAATTGATGATAATAACCAGTGAAATATTTTGTTGAATTCATTGAT
TTCTATAAACGAATGACACAGTCATTTCCTCTAGCATTGTGACATAACTC
ATTTAATGATTAATAACTCCAACCCTATTAACAGCTTAATAGAAGCATCA
ACTGTTTAAAGTAGTGAGTGATAAAGAAAATCATTTGATTGCAAGCAAGC
AGTCTGACGAAAAGTAGCGTAGTGATCAGAGCACTTTTTCCTTGTGAACT
AAAATTCGACTCTTGAGAAAAATCAATATTATTTTTAGCGAACTTTTTCT
TTTGTTTTGGTATTGCGATATAAGTGCTGTGTGTGTTGAACAGATTAAAT
GATTTATATACCATGTTTTATCTTATACCTCTTGTCATTCGATTACAGCA
TCTCTCAAAAACATGTCTTAGTGTTCAAAGTGAAACATTTTGACCAAAAC
AGATTTCGACTTATCATTTTTCTCATACTTTCTTATCTTTCAGATTGTGA
ATACGATGTATACTCGATGTTCGGAATAAAAAGAGAAAAACATTCGGTCC
ATAGCCAATACAAAATTGGCAGGATCATCGGGGATGGCAACTTTGCTATC
GTTCGGGAATGCAGGGATAGGTAAGTCAAATTATACCCCTCAAAAGTTGT
TTCATTTTATTTCTCGTTTTTATTGTGGTTTCATGTTGATATTTTGAATT
TGTATTTTCTTCTTTTCAGAAAAACACAAAAGCCATTTGCCCTGAAAATC
ATCAACAAAGCCAAAGTCAAAGGAAAGGTAAGTGTACCTACATCGAAAAT
ACTCAATGTGGGTCATCAAAACAAAAGAAGAATACTTTTGAAAATTTTGC
TCAATATGGGTCTTCATAACAAAGCAAACTTTGTGGATTTTACTCAATGT
TGGTGATCAAAACAGAGAAATCTGCCTGAGAATGGTTTGGTCAATGAATT
GAATTGTGCGTTTTTGTTTCTTTTAGGAACATATGATCGAAAATGAAATT
CTTATTTTACGGAAAATTAGTCATCCCAACATTGTCAAACTTCACGAGGA
ATTCGAAACACCCAAAGAAATCTATCTCGTTATGGAGCTAGTACCGGTAA
GAAAAGAAGAGTTTTTTGTCATATTTGTCACGTAGGAATTAAAAAAAGCT
CTAAGCTCTCAAACATACGTCTGTGATTATTTTGATTCGTATATTTTCTC
AGATGAATAGCATTATAATTTGTAATCCAATTTTTCATCGTGATGATTAT
TCTCTACTCTTCTTTTCAGGGAGGTGATCTGTTCGACGCCATTGTAGACA
ACACACGTTTCTCTGAGCCTGAGTCCGCTTACATGGTCCACGATTTAGCC
TCTGCTATTTTATATTTACACGAACTGAATATTGTCCATCGTGACGTCAA
ACCAGAGAACTTATTAATCGTCAACCGCGAAGACGGTCGAAAATCTATTA
AACTTGCAGACTTTGGACTTTCTATAGAAGTCAAATCTCCCATGTTTTTA
GTATGCGGTACTCCCACTTATGTAGCACCGGAAATCCTGGATGAATCCGG
GTACGGTACGGCCTTGAAGTGGACAACTGGGCCATTGGAGTGATTTGTTA
TATTTTTATTGTGTGGTTTTCCACCTTTCCGCAGCACCAATCATGATCAG
GAAGAACTTTTTGATAAAATTTTACGAGGAGATTATGAATATTTGAAACC
TTTTTGGAATGATGTGGGAGATGGGCCAAGGGTATGTTTACATTGTAATT
GGCTTTGATGCCTTATTTCGAACTCTATATTCGTTCCGACTTCACTAATT
TCCATGTTTTATTTTAAGCTTTGGAAATTTCTATTCCAAATTTTCCGCTT
AGGCTTACATTCAGACGTTTGGTGATAATTTGTTGACTTTATATTTTGCA
GGACCTAATAGACAGGCTACTTGTGGTCGATGCAAGTGAACGATATACTG
CTAAAGAAATCCTTCAACACTTCTGGATAAAGGTAAGTTTTCTTCGTGAC
ATCACCTAATCAATCATTTAAGTGAGAAGAATAGAAATAAATCAAGGGTA
ACATTCAAGTAATTTTACTTCAGTAATTTTCTGTTTTTCGTTTTAGAAAT
GGACAGAACCAGTGGAGAAGATACATCGAGAATTATCACAAGCGGAAGAA
GCCAACATGAAAAACAGGAAGCGTCTGCGTGGTATCGCTCTCGCTATCCA
ATCGGTAATCTCTTTACTTCATCTTGTGCGTTCTAGAAATAATTCAACAT
TATCTTCTTCTCTTCAACCAGAAGATGAAGATTCAACTTCCAGATCTTCA
CCACAAGCGGGTAGCCGCATTCCGCGCCCTACTTCAGCTTCATCTAGTCC
TAACGTCACCAACTTTCGAAAAGGCACTACCACTCCAGTCAAGCGACGTG
GTATTTCGTCTGCTGGGTCCAGGCGAATCCCCTACGATCAACCGGATTAT
TCTCTTAAGAAAGGCTTCTTGAAACGAGAGAGGAAAAAGTCGATACGGGT
ACTTTAAAGAAAAAGAAAGTTGCAGGCCGAAGTAAGATTTCAGTACCGAC
CACACCTGTACGTAAACCAAAAACTGTCAAACCGGCCGCAGAACCTTCCT
TAGCTGTGACTTCCTTCAAAGATAATCAAGTACGATTCCGACCATGTTCA
GTCATCGATATCCGAGTTGACGTGGAAGTCACAGAGCGACCTGAACGACC
TGGTAGTGCCCAAGGGTACCGAAAAAAAACAACAGATACGCGCAAAGTAA
AAGACACTATAACATCAGTGAAAGAAAAGACTGACACCAAAGTGAAGAAG
ACTCCAACAACAACCACCGTCGAGAAAACAGAGGTGAAACTTGTTTCGAA
ATCTTCGTCTGATAACATTGTTGGGGATTCGAGTGGAGTTGCTTCCAACG
GTGTGAAACTACGTAAGAAAACGTCGCGTACGACACGTCCGAATACCATG
TTAGAGTTAAGTACTTCCGCAGCAACGACCAAAGAGAGCGCCGTAACTAC
GTCTTCGAATAAACAGAAAGATGTGAAAGATGTCAAGGAAGCAGCGAAGA
ATAACATCTCTTCCGCCAAACGATCGCGACCAGTAAGCCTAATGATCAAC
AAAGAGAAAGCTTCCTCGTCAAGAAAATCTTTAACACCTTCTACTGAAGA
ATTCAACAGGAAACGAATGCAATATCGCCTGAACGACCAATTACATTCCC
TTGATGAAAATATTAAACAAGATAACTCAGGACGCATGTCTCCTAAGAAA
AACTCCAAATTCAATTTATCGAATTTAAGTTCGCCTCGTTGTCGCTCACC
TACCAGGAAAAAAGAAACAACATCTGCAAAATCTACAAAAGAAAATAGAC
CTGATGCAAAACCTCTCCCTGTTCGACCAGCAAGCTCTTTAGCTACCACG
AACAGAGATCGCTCAAGTTCACTTTCTCGACGTACTCCTAAAAACGAAAG
GTCACCTATTCGTCCGGCTACTACCATACCGCCTTCTCCAAAGAAAACAA
TAAGAGAACGTTCAGCGAGTGGCAATCGCTCCACCATCACCACAAAACGA
GCAACCACCATAACCACGCCGAAAAACTCAGCTACAACACCGAGCGTCGG
CTCTCCCAGCACAGCCAGAAAGCCGAAAAGCACACCAACCAAAGTAGGAA
CATGGAACGTTGGGACAGCAGTCCAATATAAAGCCCCAAACAGTCTCCGT
AAACCTTTATCCCCTAAAAAAACAGTGAACACAAAAACAACGAATAGTCC
GAAGCATGTTCGACGGAAAACGAGTGAAGCGGGGAAAGTCCGTATTACCA
CTGAAGTGAATAAGAGAAAAAATATAACCTTCCCGGACGGTAAGAAAGTA
GATAAAGAGACCAATACAAAAACAACCGTCTCTGTAGATATGAATGATTC
AGAGGGAGATAAAACAGTGAAACGAGCTTCCTTGCTAGCTAAAGTGAAAA
CACTTGCTCAAGAGATTGGTTCATTATCGAAACTTGAAACAGGACCTGTA
TCTGAGAGTTCTTCAGACTCCATTCAAGGTGTAGGAACACCTGTTCGTAG
TCATAGTGACGTCATGGAAAGTGTCATTAAAGAAGATACTGACCGTTTCA
GTGAAACCGAATATTTATCTTTGTCCGAAAAACCCTAAATTTCGTCCGAA
AAATGAAAGCGTATTATTGTAAATGAAGTTAGAATATATTTTTATATGGT
AGTTGACTAACATTTGTAACAAAAATTCAAATCTTTATTTTCATCATTCC
CTTCAGACAGACAGTCGAACCCAACCCATTTTTCCGTCTTATTTTGGAGT
TTTTCCTATTTTTCAAATCTTATCTTTTTCAATTTTTCATTTCATTTTCT
CACTTCAGCAAGATGGATTTTTCTCTTTTATCTTCCCTCTGCATCATTTG
CACCTTTTTTTCATTTTATTGGAAGAAAAAAATATGGGATAGATTTTGAT
CAAAATGAGTTTTCCTCTTGTTTTCTGTAAAACATGACCAATTTTGGATA
TCGAGGATGTTTTTTATTGAAAGACTCGTTTTCAGCGATTACTGAATTCT
ACAAGATATTAAATTTTCTCATAATGAAAAAATATTTGAAATGAAAAAAG
AAATTTCGGCAAAATGATCACACATGAAAGAATACAGCTGTCTTTTCTCA
GACGTAAACATTGATCGTTATCTCTCATGAAACCATTTTTTCTGATACCG
TTTCTATGACGAGTTGTTAATGCGGTTTCAATCAAAGTCTTACCGCAAAA
TGACGTATGAAAAACATTGTTCTCGCATAACTAACCCGTCAAATCATAAT
ATATCATTCAGCGAGGAAGATCACACTCAGATATTTTCATAATACCACCA
TATTATAGAAAATTTCACCCTTTATAAAAATCCCACTGTGAAAAGAAAAA
GTCAAAAAATACGCCGCCTTCAAGATGAGAATATTACTGAACAGTCGATT
GACCATTCATCGTATTTTTTCACCGCTTGACCTTGATTTTTTCTGTTGCT
TGAGTTTCATAGGCCTTTTCGCATTGTTATCGATGTCATAAAATATTTAC
TAGACCTAACCCCCTTTTTCGCTAATTTCAACACCCACAATATTTACGAA
ACACTGATACCCGACCAATATTATTGCCTTTGAGATGTTTTCAGAAATCA
CAAATCTCAATGCATTTACACCGGATGATGTCAATTAAGTCGTCATATAA
ATGCCACTCAAAAATATTCAAAACAAATATTTGTATCGTAAATAGCTACG
TAATTTGCTTCTCATCAATCAAACTAAATATCACACTAATATACAAAATG
AAGAGTGAATTTACAACAGCTTAATTGATTAAAACATGATTAATGATGGA
TCACCCGACTCATTGTTTTATACTGTACATTTCCAATATTTTTACCTTAA
CCTTTCAACGCTAACTTTTTTGAAAAAGGCCAGAAAATTCATAATTTTTT
TTTGGAAATTTATTCTTTTAAAGGCCATTTCTTGACCAGGACAAATGATT
CAGGTATCAACTTTGGTATCGTTGGAAAGCTCCTGCTCTCAGCTACAAAA
AATAGCTGATTTTATTTTTCTGAATCTCAGGTGGTCAGGAGTTATGACCA
AAAGACTGTGTATCGGTAAAATGACCTTTTCAAAACGTATATATACGACT
TTCGCCGTCTAAGGGTTAAAGAACTATATACTTTCTATCGAAATTTTATG
TTATATCTCTTTAGCCTCAAAACCGGCCATGCCTCGCTAGGTTAAAAGAA
CTATATCTTGGATATTCAGCAAATGAGAACTTAAATATCCGTAACCATGG
AAACAAATTTTGTTAAAAATATTTGATTTTTTTCAAATTTTTTCAAAAAT
TCAGTTGTTTTAATAAAAAACTTTTTGAGTAAGATTTTCAAATCTTTCTT
CCGATATTTGAAAATGTATTTCATAGTTTACTAAAACGATTTTCGCGATA
CCCTTTTACCTGAGTTTTATCGGTTCCTCAAAGATAAAAAGGATAAAAAC
GTCTTTCTTCAGACCTACATGGCTGGATTTAGTTAAAGTAAGCCTAGGGG
AGGAGCGTATAACTATAAGCAGTTCTATTTTGCTATAATTAACCTTCCTT
TCCCATATCCAAGGAAGGATATGGACCTCATTGGCTACCTGGCATCAGAG
AAAAATCATAGAGCGAAGTTGTACGTCGTACACATGTATGGTTGAAATAT
TCTTCCCGTCAATCCTAATGATTTTATCACACTCTATGTTAGAGGCTGTG
TTGTACTCCTGCTAAATCTGCATTAAAATAAAACTTAAGTGACAAGCTTT
TAGCAGTTGACCTCGAAATCACAACACACACTGTTCACGGTTTAAAAATC
TCAGACCTTTTATAAAGGCACACATTCATTGTCAATTTTTATTTTTCTCC
GAAAAGCAGTCTAGATCAAAAACAGGGGGGGGGGCTTATGAATACCTTTT
CCAAGATTTTTGTTTTTTTGTCTGCATTGATCATCTCTTTTCATACATTC
TAATAGTTCTAATTTCGGTCACATTTTCCGGACGATATGAAATTTGTAAA
CTAATTTTTATCTTAACATTATTTTCATTGATTTTATTATTAATTTAATT
CCTATTATTTGATACTCTCAAGTTTGACCATTAACATGCATTAATAATTT
TTTGGGGAAACCTGTTTTCCAATAAGCGGACAAGGGCGCACCTTTTTAAA
ATGATCTTAATATTTGAAGTTCCTACCAAGTGTTGAAAGAATAGCTGTTT
ATATTCTCAACCTACTTTTGTTAGATCAAAACAATTTTTCCCCAAAAAGG
AGTTTTTTTTATCCAGCCTCTCTATAGAAGCTTGAAATTCTTCTTTTTTC
ACTCACATTTAGGATTTGAAGAAGAACGAATCATACATCACCAACAACAA
TTGTCCAACGTCACCAAGTACCAAATATGGTTTCGTATCTGCCACGCCCA
ATACCAAAAAGACAGTCAGGCGTGTTCGTTCAACGAGCTCTTCAAGTTCA
CAAAAACAATTTTATTACTCTGACGGTGAAGATGAGGACGAAGAACACAT
CACCGAGAATGAAAGACCTTCTTCTGATAAAGAGGACCATTTAAATGATA
TGGAATTCTCGAACTTATTAAGGAGACCAAGACCGATGTCTTTTCCTTAC
GCCTTGAACGAACCACCAGATGAATTCGCCAATTTCCGTTGAAGTGTTTG
TTTTGATGTTGTATTGCCAGAGATATTCCGTTGTCCTGTCCCCTGGATGA
ATGAGATGTGTTGGTGTTTTTTGAAAAATAGGATGACAATCATTCATTTG
AAAAGTACCGGGATAATAGTGATGCTAGGTGATCGAAGTGTTCGACGTGA
TATACATTTTGACCTCTTGTTCTTGACTGGAATATGTGCACGACCATTAG
CTTTCTTTTTAAATTTTACGATTAAGGAAGATTTCATCCTCGCAGACCCC
TCAAGTCAAAGTTAAAATACAATCGTTGTTTTCATGCTTGTATGTTGATT
TTTGAAGAGAGATGAAATCTTCTTTTGTCTGACATCTCTAGACTGCAATT
TAGTGTATTTTTTGCCCTTGGTTTTTTATATATAGACTAGAAAGTATCGA
ACTAAGTTATATTTTTATACTTTATTTTCAAAACTAATACTTATAAAAGC
AGTTTGACAGTGGTGGGGAAATCTTTCTTCCGACTCTTCGACGACTTCTG
AAGACGATTTAACACTTTGGAAATTTCGATTATCTTGGGAATCCCCTTTA
CCATCCCTCCTTTCTGACAACCTTTACCCAACAACCAATCAGAAATCGAC
CTTGCCCCACAGCTAACGAACCCCTCCCCTCCCATGAATGAGTGACGATA
CCTATCAAAGATTTTTTTATGACTTTTGCTTTGGATATATATCTTGATGT
AAAAAGAAACTTGAATTTGAACTCTATGTAAATGTGTATTTCAAATGCTT
GAATTAAAATTATTTTTTGTAGATATAAATTCAATATTATTTTTTTTCGT
GACATATTATGTCGTTGATATTAGTATTTATGATTTTTGTTGGGTGTAAA
AATGATATGAATGAATGACTTATTGCACAGATGGAGGAGACACCGAGGAA
TGACAAAGTTTCAATGTTTTGTACAGAGTTCCATCAACAAATTGGATTTC
AATTTGCAGCTTCTTTAATGTTTGCCTGAACATGTAGACATTGAATTTCT
AAATATTGACTTTTTTACGAAAAAATATAATTTTGCTTTGAATAATACGA
G

Coding sequence (CDS) from alignment at sc0000134_pilon:821873..830823-

>MSTRG.15339.1.p2 ID=MSTRG.15339.1.p2|Name=MSTRG.15339.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=756bp|location=Sequence derived from alignment at sc0000134_pilon:821873..830823- (Clytia hemisphaerica_ch_hm2_pilon)
GATTTGAAGAAGAACGAATCATACATCACCAACAACAATTGTCCAACGTC
ACCAAGTACCAAATATGGTTTCGTATCTGCCACGCCCAATACCAAAAAGA
CAGTCAGGCGTGTTCGTTCAACGAGCTCTTCAAGTTCACAAAAACAATTT
TATTACTCTGACGGTGAAGATGAGGACGAAGAACACATCACCGAGAATGA
AAGACCTTCTTCTGATAAAGAGGACCATTTAAATGATATGGAATTCTCGA
ACTTATTAAGGAGACCAAGACCGATGTCTTTTCCTTACGCCTTGAACGAA
CCACCAGATGAATTCGCCAATTTCCGTTGAATGAAAAACAGGAAGCGTCT
GCGTGGTATCGCTCTCGCTATCCAATCGGATTTGAAGAAGAACGAATCAT
ACATCACCAACAACAATTGTCCAACGTCACCAAGTACCAAATATGGTTTC
GTATCTGCCACGCCCAATACCAAAAAGACAGTCAGGCGTGTTCGTTCAAC
GAGCTCTTCAAGTTCACAAAAACAATTTTATTACTCTGACGGTGAAGATG
AGGACGAAGAACACATCACCGAGAATGAAAGACCTTCTTCTGATAAAGAG
GACCATTTAAATGATATGGAATTCTCGAACTTATTAAGGAGACCAAGACC
GATGTCTTTTCCTTACGCCTTGAACGAACCACCAGATGAATTCGCCAATT
TCCGTTGAATGAAAAACAGGAAGCGTCTGCGTGGTATCGCTCTCGCTATC
CAATCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15339MSTRG.15339Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15339.1.p2MSTRG.15339.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15339.1.p2.exon8MSTRG.15339.1.p2.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15339.1.p2.exon7MSTRG.15339.1.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15339.1.p2.exon6MSTRG.15339.1.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15339.1.p2.exon5MSTRG.15339.1.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15339.1.p2.exon4MSTRG.15339.1.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15339.1.p2.exon3MSTRG.15339.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15339.1.p2.exon2MSTRG.15339.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15339.1.p2.exon1MSTRG.15339.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000134_pilongenomesc0000134_pilon:821873..830823 -