MSTRG.15266.1.p1 (mRNA) -

Overview
NameMSTRG.15266.1.p1
Unique NameMSTRG.15266.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000133_pilon:725839..730241+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15266.1.p1 ID=MSTRG.15266.1.p1|Name=MSTRG.15266.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4403bp|location=Sequence derived from alignment at sc0000133_pilon:725839..730241+ (Clytia hemisphaerica_ch_hm2_pilon)
CTAATATGAAATACCATTTCTCCCCATTTCTCTGTTTCCCGctgaatttt
tatcttttgatttaaaaaggaATTACATATAGGGTATAATGCTAGCTGAA
TGATAATTCTGACTTGATTGAACATAATGGTGGAGAAACTTGGTGAAAAG
ACTGCTTTATGGCAGCGATTATATGTTGCTGTAGGTATAAACAAATTGTT
ATTTTCTTAAGAATGCAACGTTTCTTAGatataaaacaaacaaagacaAT
TTTTATGCGTGcggagataaaaaaaattattgacatATGTAAGGAAAACA
ATCTTGATGTGTCTTGACATCCTTGAGTTAAATGGTACGAGTGGTGgtat
aaaaattttttgagaaaggTCGCTGATAATTTTAGTTTATATTTCgtaga
aataaagaaaagagaaagatggtaccgaaaagccaaaaacaaaacaaact
tgaaaTCGTGGAATACAACATTGAAAAGCATTCTGGGGAAGTacaaaaaa
ttttagatgaacACTTAATACCAATTTACTTAAAACGTATGGAAATCACA
CAAGATGAAAGATTGAAATATGCACATATTGAAAATGTCTTACATCCTAA
CCTAGCAAAGAATCccaaattcgaaaatttttctatGGTAACTTTAGACG
AGGCTGGTAAAGTTGTTGGTCTCGGATTAAGCTACATGGTAACTAAGCAA
GACTTTCAGGAGACTTTTATTGACCTTAATCTTCGGGTCGTGAATGACTC
AAGCTACAAAGAAAGTATCCGAAAATATTGCCAACACAGATATGCAGTTT
GTTATCCACTTGCAAGATTTTTTGACGAATACAATATTGATCAGATGGTT
TATACAGAAGATGCCGTTGTCTTACCCCAATATAGAGGTCGAGGAATAAA
TAATAATATGTATGAATTAATGATGGCGGAGTTTGGTCACAAGCATGCTT
TCTTTGCCGAAGAGATGATGCCTGTACAAAATATTGTGACGTCAGGAGGA
CTCAAACATGAGTTAGATGTCATAGGAACCTGGGACTCAGATGGATGGTT
ATGTATTGACCGACAATTATCTTATGATGGTTATCTTTGCCCGTTATTTT
TTAAACCACTTACACATGTACATAAATCTAAATTGTAATTTGTAGCTCTA
CCCTAAacacctctgtgtcacagacccgctaggACCCgtagccccactgg
aaaatttgccaaaaaattcgTCCCcagtaggaaaataccctgaaatttca
gccccactgggaatttgactttgatttcatccccattcgagatccaatgt
ttaaaaattgcacttcaaaaccatcctcactggattttttaaccttggaa
caaaaattaaatagaatttctatccccattgagattgcaatatgaatttt
tatccccactgaggaaaaagttccactggggctgtgtgACAGGGGTGTCT
CTAAATATGTGTCTTTTTCTTCACAGAATTTTTCTATATTCTTTTACTTG
TCAGAAACACATGATTCAGATTTGCAAATCTTGACCAACATTCAGTAAAC
TCTTCGTTGGAAAAAAGAATCGTGAATTTAAGGCTATAGGAgttgtaatt
tgaaaattttgattcatCATTACTCTGtaccaatttttttaattttgttg
ataagaatttttttacattttagatttGTCAAGAATACAATGATTTGCAT
TGTATTTGCATACAATGATTTGCATATCATGACCAATAATTCCgataatt
tcaataatttgtATTGACAGGGTATTCTACACATCAAGGTAGACTTAAAC
TTTGTATCAGACTTAAAATTTACCTAAGCCATAGACGTTTATCAGATGTT
TACTATCTCGCTACGTTTTGCTTTTAGTACAAAAATAACGACATACAGGT
CCTTTcttagtctggagatccatactctatATTCAAACTTAAAacacata
agcaaaaatcccatcaaaagctactcattgagagtatggtatttttgatc
cagtttgaatttgtttacatttggtttgaatttcatgccaaaaaagccgt
tgataaggttagccaatcaggttcgcgcacttccaatcaaaacagtaata
tcacgtgatttcaacaattgtttaacagccaatagaattctgcgaccaga
ttGTTGGGCATCaacaaaaatacccggctactctgttatttctatcgATA
TTTCTacattattattcgttttaactaaatgctatactttgaaaccacac
gaacagagtagacgggtctcccagctagtcCTTTCTTGGTGTCTTAGTAC
TTTAAAAATTCAAGAAGTAGTTTGCACTGTGCAAGGCTGAAGAATCATAT
AGCTTGGTCTAACTATATTGTTCACGGATCCCTCAAATCCATACAGTAAT
TTTGTAAAAGGCggaaaaataacgaaataaaTTTGTTAAATCTTCAAACT
TGTTTCTTTACTGACATTGTAATTATCAAGCTGAATACAACATTTTTGTA
CAAATATTAGTAATTTtaattaaaatagaaataaattaAAGACTATCATT
AAACAGACAGAACATGTCTTTTACTTTTCACAATACAaccttgtgtcaca
gacccgctgggaccccagccccactggaaaatttagcaaaaatttcgtcc
ccggtgagaagataccctaaaatttcagccccactgggaaattgactttt
atatcatccccattcgaaattcagtgtttaaaaattgcacttcaaaacca
tccccactgaattttttaaccttggaacaatagaatttctatcaccattg
ggatttcaataggcaTTTTTATCCCTGATGAGAAAAAggtccaccggggc
tgtgagacaggggtaccGGGTTGGTGCGAGTCTCCGGGTATGTCTTTCTT
AGGAATCGgcagttcttattttttggcacttatAGTCTGTTCTTATATCC
TGTTCTTTTCGCCAGGGTAAAATTGAGATACGCTAGCcttattttactac
tttaacccttaatttcctaaaaattcAGCTAGCCCAGACTCatttttgtt
cttaaattgttcttattttctgagcctcattgttcttataaaactattct
cataaaaaagtacaTAAAGCTTtgttcacatgtacgtaaaatttgaAGTT
TGCTTACGTAACTCTACCGTAACTTCAAAGTAAGATTTAACGTGCATGTC
AAAAAAGCATAATGTGTATCATTAATCCCgaaattattttaatattataa
attatGTATGTGATATATAGAACTATAACTTTGATTTAATATGAAAAGGC
ATGGGTGGTCTAAAATATAATGGGCAAACATAGCCATCATAAGATAATTG
TCTATCAACAGTTAACGTGTTGTCTGTGTCCCACGTTCCTATAGCTTCTA
ACTCATGTTTGAGTCCACCTGACACCATACTTTGTACAGGGATCATGCCT
TCGCCAAATATAGCATATTGATGTCCAAATTTCTCGTAAATGATATCATT
CATGCGTTTATTGACACCTTTTCCTCTGTATTTAGGTACAACAACGCTAT
CCTCAATACTAAGCATCTTGTCTAGGTTATATTCGTCAAAATATTTGGTC
AATTGCTGGCATATTGCGTATCTATGTTGGCAATATTTTCGGATACTTTC
TTTGTAGCTTAAGTTGTTTACAATCTTAAGATTAATGTCGATAAATTCCT
CCAGGTATTGTTGCTTGGTTACCAAGTAGCTTAATCCGAGACCAACGACT
TTACCAGATTCATCTAAAACCACcacagaaaatttttcgaatttggaATC
CTTTGCTAAATTAGGAtgtaaaatatcttcaacctcTGCATATTTCAATC
TTTCATCTTGTGTGATTCCCATACGTTTGTAATAAGTTGGTACTAAGTAT
TCGTCCAAAAGTTTTTGTACTTCCCGAGAATGCTTTTCAATATTGTATTC
CACGATTTCCAAGCCTTCTATCTTGTTTTTGAATATCATCGTGATCGAAT
ATTTTCCTTTCCACTaaaaaaaTGAATCCCTAATCTCTTCATTAATTTTA
ACAACTTTATACCATCGTTCAAGAACGTCAAGACGTGTTCCCTTCCTCtt
acgtcaaaaaatgttaaCCTCAGAAATTAAAGTTattgttttgtattttg
tataagaaactttgtatttttataaagGAATTACCCTCATATACACTTCT
CTTTCGTGCTTTTCAGCACGTTTATCCAATTTCCCATGCCTCTTGGAAGG
CAAATTGAGAAATACAAATCAAGGGAGGTTGTTTACAAATTAGGGTGCTT
AGGATGCTGCAATTCAAAGATATCTTCGAAATGAAGCTGTTAGCTTCGct
tgtttattttgatattttaagaaTAAGAATAGTATCCCAACCCAAGATTT
TCC

Coding sequence (CDS) from alignment at sc0000133_pilon:725839..730241+

>MSTRG.15266.1.p1 ID=MSTRG.15266.1.p1|Name=MSTRG.15266.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1494bp|location=Sequence derived from alignment at sc0000133_pilon:725839..730241+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGCTaaataaagaaaagagaaagatggtaccgaaaagccaaaaaca
aaacaaacttgaaaTCGTGGAATACAACATTGAAAAGCATTCTGGGGAAG
TacaaaaaattttagatgaacACTTAATACCAATTTACTTAAAACGTATG
GAAATCACACAAGATGAAAGATTGAAATATGCACATATTGAAAATGTCTT
ACATCCTAACCTAGCAAAGAATCccaaattcgaaaatttttctatGGTAA
CTTTAGACGAGGCTGGTAAAGTTGTTGGTCTCGGATTAAGCTACATGGTA
ACTAAGCAAGACTTTCAGGAGACTTTTATTGACCTTAATCTTCGGGTCGT
GAATGACTCAAGCTACAAAGAAAGTATCCGAAAATATTGCCAACACAGAT
ATGCAGTTTGTTATCCACTTGCAAGATTTTTTGACGAATACAATATTGAT
CAGATGGTTTATACAGAAGATGCCGTTGTCTTACCCCAATATAGAGGTCG
AGGAATAAATAATAATATGTATGAATTAATGATGGCGGAGTTTGGTCACA
AGCATGCTTTCTTTGCCGAAGAGATGATGCCTGTACAAAATATTGTGACG
TCAGGAGGACTCAAACATGAGTTAGATGTCATAGGAACCTGGGACTCAGA
TGGATGGTTATGTATTGACCGACAATTATCTTATGATGGTTATCTTTGCC
CGTTATTTTTTAAACCACTTACACATGTACATAAATCTAAATTGTAAATG
TTGCTaaataaagaaaagagaaagatggtaccgaaaagccaaaaacaaaa
caaacttgaaaTCGTGGAATACAACATTGAAAAGCATTCTGGGGAAGTac
aaaaaattttagatgaacACTTAATACCAATTTACTTAAAACGTATGGAA
ATCACACAAGATGAAAGATTGAAATATGCACATATTGAAAATGTCTTACA
TCCTAACCTAGCAAAGAATCccaaattcgaaaatttttctatGGTAACTT
TAGACGAGGCTGGTAAAGTTGTTGGTCTCGGATTAAGCTACATGGTAACT
AAGCAAGACTTTCAGGAGACTTTTATTGACCTTAATCTTCGGGTCGTGAA
TGACTCAAGCTACAAAGAAAGTATCCGAAAATATTGCCAACACAGATATG
CAGTTTGTTATCCACTTGCAAGATTTTTTGACGAATACAATATTGATCAG
ATGGTTTATACAGAAGATGCCGTTGTCTTACCCCAATATAGAGGTCGAGG
AATAAATAATAATATGTATGAATTAATGATGGCGGAGTTTGGTCACAAGC
ATGCTTTCTTTGCCGAAGAGATGATGCCTGTACAAAATATTGTGACGTCA
GGAGGACTCAAACATGAGTTAGATGTCATAGGAACCTGGGACTCAGATGG
ATGGTTATGTATTGACCGACAATTATCTTATGATGGTTATCTTTGCCCGT
TATTTTTTAAACCACTTACACATGTACATAAATCTAAATTGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15266MSTRG.15266Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15266.1.p1.exon1MSTRG.15266.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15266.1.p1.exon2MSTRG.15266.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15266.1.p1MSTRG.15266.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000133_pilongenomesc0000133_pilon:725839..730241 +