MSTRG.15206.1.p1 (mRNA) -

Overview
NameMSTRG.15206.1.p1
Unique NameMSTRG.15206.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000132_pilon:818004..822304+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15206.1.p1 ID=MSTRG.15206.1.p1|Name=MSTRG.15206.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4301bp|location=Sequence derived from alignment at sc0000132_pilon:818004..822304+ (Clytia hemisphaerica_ch_hm2_pilon)
ACACCCTACAACAAAGCTCTTTATAAAAGAGGAAGATCGGGTTCTTTGAA
ATCACACTAAATCACTCTTGAATAAAGAAGGACCCGAAAGAAGAGTCAAG
CATTTAATCGAGATggccattttaaattttcttatttgtACATTAACTCT
GTAAGTCTTATTATTTCGAACAATCTAACTTTCGATTGAAACTGTTCTTA
GCTCGGAGATTTTCACAGAATACTTTTTGTGCTATGACCAACATAGAAGC
GATTCTTGGCAGATTTTCATTATCTCCAATGAATTCTTGTTTTGGAAAGA
TTAAGATAATCATTTTCTCATTTCCCAGAATCTCATTAGCAGAAGCAATC
AAATATAACGTAGATGTCAGCTCTCAATTGGACGAGCGTATCGTCCACAT
CGAGTCGTTGAGATATCGTGGTTACTGGTTGAGGTCCTCAAGACTCCTTG
GTAAACCTGCATATGTTTCGGCATTAGCTGAACGTCAAACATACTACACA
CAATGGTCGCAATACAAGGTattttttattaaactcatttttgagtgtct
tgctttttgattgttttgatttttttgaactgtttgaACAGATTAATTGA
CAAAATGTAAATgaattttaaagcattttatgaTACTCAAAAATCTTACT
ACAGTGTGCACCCCCTCACTTTGCAGGGGACTtagtttatttgtttcttt
aggtgacgttttttggttttcagGGGGAGCAGGGATAAGTGAGACAATAT
TTTTCAGGTGGGATGTCgtgggtttttattttttctgtgtcTTTGTTCTA
ACTTTTCAAGAACGACAAAATTCATCCACCATTGACTGAATCATTTTCAA
TGAACCAAATAGTGTGCACAATCTTAATCTGATTAATACCAGACACCAGG
CGTTATTGAATCCTTtaatgatttgaaagatttagaTTTATTTAGTGGTG
GAACATGCTTGATTGATTTCAGGCGGGTGTTTTAACATGTGCTTGGAACT
TATTTATTTGGTTGGGCCTTGACCCCCCTTGTCACTATGCTTGTTCACAT
TTACTTTATAGGCTTTAAGTGATTAACACGTTAGTCACATAGTGTCCTTC
CCCCTTTCAAAAAAGGAGGGACAAAAACCTTTCTGAAAATCAAGGGGAGG
CGGCAAAAACATGCCTCTTTCAGAGAAATGACTCAATTTTAATCCAAaga
tgtcaatttttaggcaaaaacaCATGAAATTGTGGACTTTGAggcttttt
tttcgaaaagggggggggggcaagaggtttctttaaaaatctaggggggg
gggcaaccagaatttttcaaaatctcaagGGGGTAACCAACCCACTGGGA
CGCTACGAGTCACGTGTATGAAGTATGGTGCTATTCAGTTGAGTTCATAC
GCCTCTACAATTCTGACTAAAAAGAGATTATTATGTGTTACAGGTGAAAA
GCATTGGAGGAGGTATAGTGACAATGGAAGCAATGAGATTTCCCCTTCAC
TACCTTAAAGCACATACTTCTGGATGGGTTGGCACCTCCCACACCACATA
TCCTGATAATAAAGTGAGTGTCATGGTTTTTAATTATTCAGCTTGTATGT
TTACACGGTGGCCACACAATCATTTTTTGCAAATTCCAGGACTTTATTTA
GGTcgatatgaaaaaaattattcagagaTTTTGATTATTCCAGGACTTTC
AAGgacaatttttgactttttccaggACTTTAGGTCATAAAATTCCAGTC
GATATGAAAAAGATTATTCAGAGATTATGATTATACCATGACATCCTAGg
acattttaaaaaaatataagaaatccCAAGACTTTTCAGGAGAAAACGTC
AATTCCAGGATATTCCAGGAGTCTCCAGGAGTGTGGCCACCATGTTAAGA
GAATGTTCAAGAAGAAGCTTGTGTTTGTGAGAAAAACGAAATAAGAAATC
AGTTAAGTTTTGCAAggttttttatatcaaaataatcATACGAAAGATAT
CTAatagaaaataagatttttcgttATCTTTTGATACACCTCCCTTATCC
AAATATCAACTCGTACTTCACGTTAGcccccccaagtattcatgatatgc
atcattgcaatgtcttccaaggacccaacagctgattggttgaaagtgac
gtattaactgactttacgtcacttacaaccaatcagctgttgggtccgtg
gtgtaatgtcagaagacattgcaatggtgcatatcataaatacaTGTAGT
AAGCAACAAGGATGAGGTTTAAAATCTCAGTCATTGCTTCTTTTATCAAG
GAGAAATTCCCTTTATTATCAAAATCACAGGCCTGGGCAAAATGGAAGAT
TCGTTGTACAAGCAAAGCAATGGAAAATTGTATTTTCGAATCAGTGAGAT
TTGCAGGTTACCTTTTCGATTCACACCACACGCGAAGTGTTCGTATTGAA
TCTTATGGTGACTCATGGTCAAGATTCAGAATATTAGCACCGGATGCTAA
AGACTACTATGTGTAagattttttactcattttcgtATACCACGTTTTTT
CTATAAGtatataaaaatccaaaataatGGCTCGGAGATGATGCTTAGAT
CGAGAGAAATGCTTAAAGGATGGTTATATCTTAAgcaaaattttagcaaa
attccgaaaatccgtaaaatttcagtcaaaaacAGTGAAAGTTGAGAAAT
TTAGGCGCAATGTAACCTAATgtagcatatgcttaaatttttgctaTATC
TGATGCTAGATATgtttataagtgcaatgcttataaaaaaatattatatt
ctgGTTATACAATATTTGCATACCAGAAACATCACCAGAGTCTTACGAAG
AAGACACCCATCTTTTGGTCTAAGTGTCTGGAAGCATTTTCAGCATGATA
ATGAAAGAGTATCAATCCACTAGAGAATGTTAAAACTGTAGGATTTCAAA
AAGCTTTTCGGACAattaaagactttcaaaacaacaaaatcaatctttaa
aataaatgcTCATAGTCTTCAGAGGACCTTTCTACTTGGTCAAATCAGCT
GCAGATGGTCTATGAAACATCCTATTAATGTTCAGATTCCTTCCACTTTT
ACTTGCTGATTAGGTAGGAGTATCTTACAACCGAGATCAAACGCGATCAT
GATTTCTCGGTGCATCTCAACCCTATCATTCATagtattttggtaaattt
tatatataGGACTATCCTATCAACGGAGAACCACAGTAGTGCAGCATCTA
AGAAAACGTTGACAGTATCTGAAGGAATTACTGATTCGACTTCCACAGAA
AACGGTATCACCACATCAGTTTCCATGGAGATCAAAAAAGCTTTCGTCAC
AAAATCAGGTTCCATATCCCATTCTTGGAAGGTAAGATAGGTACAGTTTA
CTATTGTAAAAAGCTTAATAAAAAATAACCTGCTTTATTGCACTTAATTA
CCTCTTTCAAGCTGTACAATTGACATCAAACACAGACAAAAAATACACCA
TAGAATGCACTcccccccccATGAGCTTAgggggggctaaaccatttttg
cttgattgggggctgtaCTTTTTAAAAAGTGGCTGGCTTGCTAAGGGGTG
GTTGAGTGTTGAGTAATAGAACTGGAGGAAGAGCTGATAggttacaaata
ttttaaattatgttaagaATCTATGCTGTGGGAATGTTCTGACCCctctt
aaaaaagtttttgcctGCGGCGAAATAAATTCATTGAGAATTTGCATGCA
caatttcttcaatattttgctttgtgaaggtgggggTTACGTTTGTAAAA
TTTAGCCGGGGGCTATCTTAGCCCGGCTtccccctgaaaaatgctgggga
CTGACCCCTCTGCATTCTATGTACGCtgaattttcatctttcaagATGGT
AAAATCGGGAAAAAAGGGTGATTATCGCAGTCTTTAACTGTTCTATAAGT
TCTATAAAACCTTGTGCAATTCTAACTTCCCTAAAAGCACAGAATAAGTC
TCAACAAAATCTACATCATCTCTTCCAGCAAACTGAGACAAAGACGTTCG
AAAAGCAAACAACCTTCTCGTACGAAATAATTATTCCACCTCAAACCAAA
ATCGAAGTTCGGCAACTGACTGGAGAGTATGGTCCcttcaaaatcaaagt
caacAAGTTCATCATTGATCAAACAGATCTGAAGACCAAAACAGCCAaat
caaaaacatcaatttcCTTTTAAAGAAATTGCAGTTTCACTTAGTAAAGA
TTCCATATTATTATCAGGTTGTTTTACtgtattgatttttttccaacacc
T

Coding sequence (CDS) from alignment at sc0000132_pilon:818004..822304+

>MSTRG.15206.1.p1 ID=MSTRG.15206.1.p1|Name=MSTRG.15206.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5382bp|location=Sequence derived from alignment at sc0000132_pilon:818004..822304+ (Clytia hemisphaerica_ch_hm2_pilon)
ATggccattttaaattttcttatttgtACATTAACTCTAATCTCATTAGC
AGAAGCAATCAAATATAACGTAGATGTCAGCTCTCAATTGGACGAGCGTA
TCGTCCACATCGAGTCGTTGAGATATCGTGGTTACTGGTTGAGGTCCTCA
AGACTCCTTGGTAAACCTGCATATGTTTCGGCATTAGCTGAACGTCAAAC
ATACTACACACAATGGTCGCAATACAAGGTGAAAAGCATTGGAGGAGGTA
TAGTGACAATGGAAGCAATGAGATTTCCCCTTCACTACCTTAAAGCACAT
ACTTCTGGATGGGTTGGCACCTCCCACACCACATATCCTGATAATAAAGC
CTGGGCAAAATGGAAGATTCGTTGTACAAGCAAAGCAATGGAAAATTGTA
TTTTCGAATCAGTGAGATTTGCAGGTTACCTTTTCGATTCACACCACACG
CGAAGTGTTCGTATTGAATCTTATGGTGACTCATGGTCAAGATTCAGAAT
ATTAGCACCGGATGCTAAAGACTACTATGTGACTATCCTATCAACGGAGA
ACCACAGTAGTGCAGCATCTAAGAAAACGTTGACAGTATCTGAAGGAATT
ACTGATTCGACTTCCACAGAAAACGGTATCACCACATCAGTTTCCATGGA
GATCAAAAAAGCTTTCGTCACAAAATCAGGTTCCATATCCCATTCTTGGA
AGCAAACTGAGACAAAGACGTTCGAAAAGCAAACAACCTTCTCGTACGAA
ATAATTATTCCACCTCAAACCAAAATCGAAGTTCGGCAACTGACTGGAGA
GTATGGTCCcttcaaaatcaaagtcaacAAGTTCATCATTGATCAAACAG
ATCTGAAGACCAAAACAGCCAaatcaaaaacatcaatttcCTTTTAAATg
gccattttaaattttcttatttgtACATTAACTCTAATCTCATTAGCAGA
AGCAATCAAATATAACGTAGATGTCAGCTCTCAATTGGACGAGCGTATCG
TCCACATCGAGTCGTTGAGATATCGTGGTTACTGGTTGAGGTCCTCAAGA
CTCCTTGGTAAACCTGCATATGTTTCGGCATTAGCTGAACGTCAAACATA
CTACACACAATGGTCGCAATACAAGGTGAAAAGCATTGGAGGAGGTATAG
TGACAATGGAAGCAATGAGATTTCCCCTTCACTACCTTAAAGCACATACT
TCTGGATGGGTTGGCACCTCCCACACCACATATCCTGATAATAAAGCCTG
GGCAAAATGGAAGATTCGTTGTACAAGCAAAGCAATGGAAAATTGTATTT
TCGAATCAGTGAGATTTGCAGGTTACCTTTTCGATTCACACCACACGCGA
AGTGTTCGTATTGAATCTTATGGTGACTCATGGTCAAGATTCAGAATATT
AGCACCGGATGCTAAAGACTACTATGTGACTATCCTATCAACGGAGAACC
ACAGTAGTGCAGCATCTAAGAAAACGTTGACAGTATCTGAAGGAATTACT
GATTCGACTTCCACAGAAAACGGTATCACCACATCAGTTTCCATGGAGAT
CAAAAAAGCTTTCGTCACAAAATCAGGTTCCATATCCCATTCTTGGAAGC
AAACTGAGACAAAGACGTTCGAAAAGCAAACAACCTTCTCGTACGAAATA
ATTATTCCACCTCAAACCAAAATCGAAGTTCGGCAACTGACTGGAGAGTA
TGGTCCcttcaaaatcaaagtcaacAAGTTCATCATTGATCAAACAGATC
TGAAGACCAAAACAGCCAaatcaaaaacatcaatttcCTTTTAAATggcc
attttaaattttcttatttgtACATTAACTCTAATCTCATTAGCAGAAGC
AATCAAATATAACGTAGATGTCAGCTCTCAATTGGACGAGCGTATCGTCC
ACATCGAGTCGTTGAGATATCGTGGTTACTGGTTGAGGTCCTCAAGACTC
CTTGGTAAACCTGCATATGTTTCGGCATTAGCTGAACGTCAAACATACTA
CACACAATGGTCGCAATACAAGGTGAAAAGCATTGGAGGAGGTATAGTGA
CAATGGAAGCAATGAGATTTCCCCTTCACTACCTTAAAGCACATACTTCT
GGATGGGTTGGCACCTCCCACACCACATATCCTGATAATAAAGCCTGGGC
AAAATGGAAGATTCGTTGTACAAGCAAAGCAATGGAAAATTGTATTTTCG
AATCAGTGAGATTTGCAGGTTACCTTTTCGATTCACACCACACGCGAAGT
GTTCGTATTGAATCTTATGGTGACTCATGGTCAAGATTCAGAATATTAGC
ACCGGATGCTAAAGACTACTATGTGACTATCCTATCAACGGAGAACCACA
GTAGTGCAGCATCTAAGAAAACGTTGACAGTATCTGAAGGAATTACTGAT
TCGACTTCCACAGAAAACGGTATCACCACATCAGTTTCCATGGAGATCAA
AAAAGCTTTCGTCACAAAATCAGGTTCCATATCCCATTCTTGGAAGCAAA
CTGAGACAAAGACGTTCGAAAAGCAAACAACCTTCTCGTACGAAATAATT
ATTCCACCTCAAACCAAAATCGAAGTTCGGCAACTGACTGGAGAGTATGG
TCCcttcaaaatcaaagtcaacAAGTTCATCATTGATCAAACAGATCTGA
AGACCAAAACAGCCAaatcaaaaacatcaatttcCTTTTAAATggccatt
ttaaattttcttatttgtACATTAACTCTAATCTCATTAGCAGAAGCAAT
CAAATATAACGTAGATGTCAGCTCTCAATTGGACGAGCGTATCGTCCACA
TCGAGTCGTTGAGATATCGTGGTTACTGGTTGAGGTCCTCAAGACTCCTT
GGTAAACCTGCATATGTTTCGGCATTAGCTGAACGTCAAACATACTACAC
ACAATGGTCGCAATACAAGGTGAAAAGCATTGGAGGAGGTATAGTGACAA
TGGAAGCAATGAGATTTCCCCTTCACTACCTTAAAGCACATACTTCTGGA
TGGGTTGGCACCTCCCACACCACATATCCTGATAATAAAGCCTGGGCAAA
ATGGAAGATTCGTTGTACAAGCAAAGCAATGGAAAATTGTATTTTCGAAT
CAGTGAGATTTGCAGGTTACCTTTTCGATTCACACCACACGCGAAGTGTT
CGTATTGAATCTTATGGTGACTCATGGTCAAGATTCAGAATATTAGCACC
GGATGCTAAAGACTACTATGTGACTATCCTATCAACGGAGAACCACAGTA
GTGCAGCATCTAAGAAAACGTTGACAGTATCTGAAGGAATTACTGATTCG
ACTTCCACAGAAAACGGTATCACCACATCAGTTTCCATGGAGATCAAAAA
AGCTTTCGTCACAAAATCAGGTTCCATATCCCATTCTTGGAAGCAAACTG
AGACAAAGACGTTCGAAAAGCAAACAACCTTCTCGTACGAAATAATTATT
CCACCTCAAACCAAAATCGAAGTTCGGCAACTGACTGGAGAGTATGGTCC
cttcaaaatcaaagtcaacAAGTTCATCATTGATCAAACAGATCTGAAGA
CCAAAACAGCCAaatcaaaaacatcaatttcCTTTTAAATggccatttta
aattttcttatttgtACATTAACTCTAATCTCATTAGCAGAAGCAATCAA
ATATAACGTAGATGTCAGCTCTCAATTGGACGAGCGTATCGTCCACATCG
AGTCGTTGAGATATCGTGGTTACTGGTTGAGGTCCTCAAGACTCCTTGGT
AAACCTGCATATGTTTCGGCATTAGCTGAACGTCAAACATACTACACACA
ATGGTCGCAATACAAGGTGAAAAGCATTGGAGGAGGTATAGTGACAATGG
AAGCAATGAGATTTCCCCTTCACTACCTTAAAGCACATACTTCTGGATGG
GTTGGCACCTCCCACACCACATATCCTGATAATAAAGCCTGGGCAAAATG
GAAGATTCGTTGTACAAGCAAAGCAATGGAAAATTGTATTTTCGAATCAG
TGAGATTTGCAGGTTACCTTTTCGATTCACACCACACGCGAAGTGTTCGT
ATTGAATCTTATGGTGACTCATGGTCAAGATTCAGAATATTAGCACCGGA
TGCTAAAGACTACTATGTGACTATCCTATCAACGGAGAACCACAGTAGTG
CAGCATCTAAGAAAACGTTGACAGTATCTGAAGGAATTACTGATTCGACT
TCCACAGAAAACGGTATCACCACATCAGTTTCCATGGAGATCAAAAAAGC
TTTCGTCACAAAATCAGGTTCCATATCCCATTCTTGGAAGCAAACTGAGA
CAAAGACGTTCGAAAAGCAAACAACCTTCTCGTACGAAATAATTATTCCA
CCTCAAACCAAAATCGAAGTTCGGCAACTGACTGGAGAGTATGGTCCctt
caaaatcaaagtcaacAAGTTCATCATTGATCAAACAGATCTGAAGACCA
AAACAGCCAaatcaaaaacatcaatttcCTTTTAAATggccattttaaat
tttcttatttgtACATTAACTCTAATCTCATTAGCAGAAGCAATCAAATA
TAACGTAGATGTCAGCTCTCAATTGGACGAGCGTATCGTCCACATCGAGT
CGTTGAGATATCGTGGTTACTGGTTGAGGTCCTCAAGACTCCTTGGTAAA
CCTGCATATGTTTCGGCATTAGCTGAACGTCAAACATACTACACACAATG
GTCGCAATACAAGGTGAAAAGCATTGGAGGAGGTATAGTGACAATGGAAG
CAATGAGATTTCCCCTTCACTACCTTAAAGCACATACTTCTGGATGGGTT
GGCACCTCCCACACCACATATCCTGATAATAAAGCCTGGGCAAAATGGAA
GATTCGTTGTACAAGCAAAGCAATGGAAAATTGTATTTTCGAATCAGTGA
GATTTGCAGGTTACCTTTTCGATTCACACCACACGCGAAGTGTTCGTATT
GAATCTTATGGTGACTCATGGTCAAGATTCAGAATATTAGCACCGGATGC
TAAAGACTACTATGTGACTATCCTATCAACGGAGAACCACAGTAGTGCAG
CATCTAAGAAAACGTTGACAGTATCTGAAGGAATTACTGATTCGACTTCC
ACAGAAAACGGTATCACCACATCAGTTTCCATGGAGATCAAAAAAGCTTT
CGTCACAAAATCAGGTTCCATATCCCATTCTTGGAAGCAAACTGAGACAA
AGACGTTCGAAAAGCAAACAACCTTCTCGTACGAAATAATTATTCCACCT
CAAACCAAAATCGAAGTTCGGCAACTGACTGGAGAGTATGGTCCcttcaa
aatcaaagtcaacAAGTTCATCATTGATCAAACAGATCTGAAGACCAAAA
CAGCCAaatcaaaaacatcaatttcCTTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15206MSTRG.15206Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15206.1.p1MSTRG.15206.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15206.1.p1.exon1MSTRG.15206.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15206.1.p1.exon2MSTRG.15206.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15206.1.p1.exon3MSTRG.15206.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15206.1.p1.exon4MSTRG.15206.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15206.1.p1.exon5MSTRG.15206.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15206.1.p1.exon6MSTRG.15206.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132_pilongenomesc0000132_pilon:818004..822304 +