MSTRG.15174.2.p1 (mRNA) -

Overview
NameMSTRG.15174.2.p1
Unique NameMSTRG.15174.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000132_pilon:391472..397184+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15174.2.p1 ID=MSTRG.15174.2.p1|Name=MSTRG.15174.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5713bp|location=Sequence derived from alignment at sc0000132_pilon:391472..397184+ (Clytia hemisphaerica_ch_hm2_pilon)
CGTAAGACCGTTTGGCCACGGAAAATTAGCATTTGATTTACTCATGGCGT
CCTCGCAGTGCGGATGATTTTGAGTCAAAGTGCAAAAGCTGTTTGGTTAG
GACTGGCAGCAGCAAACAAAATGGaacagtttttgtttgttttatttatt
gcaTCTAGTTTTATAACGGTCCATTCGGTAGAATTGACTTTTGAATTGGA
AGATAATGCCAGAGAATGTTTCCACGAAACCATtgtcaacaaaacaaaat
gtacaCTTGAGTTTCAGGTATAAAAGCTTTTATACtgtacacttttttgc
ttcatACTTGCCCtataacaacttttttttactaagCTCTACTCATCAAG
TTCTGTCATTATTCTCTGtttgaatctttttctaaaaattttttaagcac
ACCCTTGACCCAATGTTATAAGATAAACcgaccagacggtactaatcgaa
caTTCGATAATTAATTGTGATCGAAGTATctaatcaataatgatcgataa
taatcgaagtTGGTCAGTGACCACCTATCGGTTTTATCGGTGATCAAATA
TTCACTCGACTccagattatggcattttcttctCAACCATTTTCAATTAC
AATTTGCTCAATCATTACGATTACTTTTCGATTACCTttgatcatattga
ataccttaGATTGTATTGAGTACCGTGAGATCGgctaacttgcatcagtg
gaggctaacatgcatagttAGAGACAGGAGTAATaggaaagcttgaatca
ctgattgacaaaggattattcctctctgacacTACTAACCAAAGAAAAAC
TGTTttgacctttctatcaatttcagctgataaataaaaggtagcctgga
tatccaagctcaaaattttagaaaaaactaaaattacctcagcatacaaa
gttctaaaattatagagcttggtctccctaaagaatgaaagtgcaaaccc
atgtttcctagccaacccagggcagcaaaacagaaattaataaatagcag
tcttacaagatctaacactatttaaaacatccaaagattacaccaaagtc
cataaaaaagtttgcatgcattatcatgaccaaccatgttttcttggaaa
atgaacttgcctctgttttcttctttttcatgttttcatgtaacagaaag
ccctatcttcactagcaactggaggactatcctttttttgctttagaatt
gctccacgccgtgtagattggcccttacggttttagcgaagtgagcacAA
GCAAGCGGATTGCATTCTCTTTaggagaatgcaaatcgctctagggagac
caagctgtAAActagaacataaaatatcaaaactagactgtgaaatagtt
tacagcctggatatccaggctaataaaaagggtgtcggaattagaggagg
ggtgtcaacattagaccaagttacggtaaatgacctggctggtcattaaa
atacataaagttaaatcaaaacaaaaatggtagagtagagctgcgagagg
AGCTGCGtaatttcatttgttttgaaattttgctggtTTAATTGGTCAGT
CATTCGATAGCTATggtatgcaagtttccctcaactgatacaagttaccc
aacttcacggtgCTTTCCAGccttcaattttatcaaatatgtttccagta
GCAGCGCATCAAAATAATCTAAAACCAAGTTTACTTCGGCCAATCAAAAC
ACGCGATTCATGTGcaaaaaccactttcgttttcaccgaccaatcagaat
gcgtGATATGAGTTATTTTGGGCAGGAAACCCAGGGCGAAGGCACACAAA
ATGGCAGGGAAATAAGGGGGTCAATCTTTATGGCAgggcttctttttgtg
ctttggtttttGTCACTCGCGCGACAAATTatacactcgttatttgttga
TTCCAttgggcgataggcggttaggcgacgggcgttctctaattctccaa
tcggcgtccggtcattttgaatgaaaacaacaaaaaaacttgcCATCTTt
acaaaaattgtatttttgatttttcaaacattcgtcttaagcgttcactt
ccacaataatttcaAGTAATTGTTATGTAATTCCACTTTCAATTAGTCGG
GTTCATCATATAGACGCACACTGTTCTGGGGGTAAGTGTTGTTGAAGCAA
TACAGATTATTCTTAAAGAGATTCCTATTACGAATAGAACAATtgagaac
atcgtaagaacattcaGGAACATTTaagcatgaaaatttcaaaaaattaa
gaacagcccagcctgtGTGCCAAAATTTTCTgttaaaaaaaagcatgtaa
ttTGTTAAGAAATGCAGAGGGGCAAGTGCTCATAAAGTCctccaaaattt
tgaatatctgcATGATAAAAGGACAAGTTGTTTGGATCCTACAATTCTTG
TCACAAAGTTTTGGCTATAACAATACATTTTTCCCTCACTGATTTTTTAA
AGGTTGTAACTGGTGGTCATTATGACGTAGATGTGATAGTTAAAGATCCC
CATGGGAAAATATTATATgatgaaaagaagaaacaataTGACAGTGTCAA
CTTTGATGCTGAAGTTCTAGGTTTGtgactttttgttgtttttttgcact
GGTCCCCTGGCCGAAAATGAGATTTCCTTTTCTTCACATCATTTGATGCT
AATATAATCAGTGCTAACTCAATTAAAATGATCCAATTTTCTTTAATTGG
ATACCGTAGATTTAGATAATTTGAACTTGTGGTATTGTTTTAACTCCTGT
CTGATTAGTATAATAGTAGCTTCTTAATAAAACTATTGTCAAGTATTCTA
GTGTTTTTTAGCTGCAATCCTATTTATTCagcaatttcattaaaatatta
taGTAATCAAACGATCTTGAAGGCTTGCCTGAAATTGTCTCTTGGGTTGT
GCATATATTGTATCTAATTTGCTAGCCCCCCAATcaataaaaattctttt
cgGATTTTTCTTAACCTCCCTTGGACTTTCATGGCTAGCCTTCAGGGCCA
TTTTAGAAATGTactattttgaaaatgtaaataaattatCTTGATAACCA
CTGATTTTTCTGAATGCTGAATCCAAGAGACAACATAATTAACATAATGA
GAGGCAAGCTTTCAAGGTGTTCAAGAAAACCACCATGTCTCTTTTCAGGG
GAATACGAGTTTTGCTTCAGTAATGAGTTCTCAAGCTACAGTCACAAAAC
CATTTACATGGACTTCCAAGACGGCAGTAAAGAACCCCCTCTACCTATTG
GGCGAGGTCGAGGAATGGATGAAGGTCAATATTCTTTAACCCTCATTGAA
TCGTCAGCTGTACAAATTCACGAATCATTGAACACTATTATTGATTATCA
AACACACCATCGTTTAAGAGAAGCGAAATCAAGAAGCTTAGCTGAATATA
TTTTTGAACGTGTGAACTATTGGTCTATTGGTCAAACTTTGATCATGTTG
GGCATGTCACTCTTACAGGTGTTCACGTTGAAAAGGTTATTCACTGAAAA
ACGAGAtcgaatttgaaagaaatgacGTAATTCGGCTTACACACACAATT
TACTGAAAGATTAACCGAAAAACTTTATTTCATATGGTCGATGTTCCGGT
TTGGATCAGTCTTTGGTAAACCTCTGGAGGATACCTATGTGTAATTTGAA
GTGATGTTGATGTTGATTGGaaaggtgtttttaataaaattctAGACTGT
tagacaaatttttatacattttagtttctcattgttcttatactTCTTTT
AGTTATGTATCTCTCCATGTAATTCAATTTTGAAGTTCTGGCGTTTTCCA
CTTCGATTTTCTCTTCAGCTTCATAAATATTGTGACTACCATTGTTAAAT
GGGTATGAAAATACCTATCAAGCTTTTCAATAGCGTACTTTTGTAGACCT
TGTTTGGCCACCACCTTTCTAACTAGACTCAggttttaaattattttatt
tttgttataattagaggtggtttttatgttgcttttGATATTCTGAAAga
ttcatttttaaaaacattttcacgaTCAACCAAGAATTTCACCTGAATGT
CTCTCGTGCAAAGAAAACTTTATCAACTAAGAGAAATAATTCTGAGATTC
TTGGCTGGGCtgtatatttcattttttgtaaacttgttatgtaaaaattt
caaagttatatCAAATATATAcgagaaaatctttaaaaagttatttcaaa
GTGTGAATGTGGTGTGAATGTCCttgaagaattttattttcttattgatt
tgagatttttttttattttttaagaattttcacaCTGTTTGTTTGTCACA
CTTTGCATTTCGTATTGTCGGTTTCCATTGATCTACCTATGCTAGTATta
cataagatttttttttaaattgagtaAACTCTAATAATATGACAGAAGCC
TTCTGTACTACACAGCCCTACAAATGACCCAtcatttctttaattttagG
TGAATACGTATTTTGTTACAGTAACGAATTCTCCTCATTCAGTCATAAAA
ccatttattttgatttcaacCATGGTAACGAGGACCCGCTCACCCCTGGT
ATCGGCTCTCAGCATACGGCCTTAACACAAATTGAGACGTCATCGGTCCA
GATTCACGAATCGTTAAATGTTATTATCGATTATCAAACACATCATCGGT
TAAGAGAGGCAACTTCTAGGGATAATGCTGAATATTTGAATGAACGAGTC
CAATATTGGTCTATAGGACAAGCTGTTATAATTTTAATTGTCTCGCTTGT
TCAAGTTTTTGTATTGAAGAATTTCTTTGCAGAGAAAAGGGACCGGATTT
GATATGCGTTTTTCTGGAAGATGATTGatttagaatttatttatttgtta
taCTTTGTTCATtaaatagagtttttttattattgttgtCTACTTCAGTA
AACTTCCGttgttttgatgctttttttaACTAGAGATTTCTTCTTTGGGT
TATTTTACTTTTGGACAGtatatatatataAACAAACGTTTTGAAGATTA
AAAAgcagaaaattaaaaacatagcCTGAAACTATTTCGTCTTATTTTTA
ACAAAGATTTTTACTCTTATTTACTACTAGCTAAGATATTCCAGATATTT
TTCATTCCCATAgcttttatatattatattactACAATTCGGAGAAAGCA
AAAAACGAAGTATTTTACACCGATTCACAGTTCGGAAAATGTAGCAattg
attacacgttttttttataagaacaaactatataagaacatgagggttag
ctggccaaaatgttaagaacattttaaggctttgtggactcaaaaacacc
ccatttctcaggaaaattggcaaagatattcacaaaattttcaaaataag
aacatgttaagaacatttttcagcttagaactaaaaaagttaagaacatc
ccaaggcttcgaaaatttgtgatgtgttcttataaaaaaaacgtgtacca
ttTGAACCTGCACTTATGAAAAGAGAACTCGTGGATTTTCCTAAGTTTAT
CTCGTTGAGCAATGAGcatatttctaattttgaccTGGTGGAttcttttt
aaagcattttttgtgaTATTGTGATTGCTTGAGTTTTGGTCCGGTGTTTG
GAGGGGACTTTCATTCATTAtgtcaaagtttttgttttctgtGTTGTTGA
tatttatataattattatagagagaaTtttttatgcaagaataattttca
aaaaatgaatttg

Coding sequence (CDS) from alignment at sc0000132_pilon:391472..397184+

>MSTRG.15174.2.p1 ID=MSTRG.15174.2.p1|Name=MSTRG.15174.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2025bp|location=Sequence derived from alignment at sc0000132_pilon:391472..397184+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATTTTGAGTCAAAGTGCAAAAGCTGTTTGGTTAGGACTGGCAGCAGC
AAACAAAATGGaacagtttttgtttgttttatttattgcaTCTAGTTTTA
TAACGGTCCATTCGGTAGAATTGACTTTTGAATTGGAAGATAATGCCAGA
GAATGTTTCCACGAAACCATtgtcaacaaaacaaaatgtacaCTTGAGTT
TCAGGTTGTAACTGGTGGTCATTATGACGTAGATGTGATAGTTAAAGATC
CCCATGGGAAAATATTATATgatgaaaagaagaaacaataTGACAGTGTC
AACTTTGATGCTGAAGTTCTAGGTGAATACGTATTTTGTTACAGTAACGA
ATTCTCCTCATTCAGTCATAAAAccatttattttgatttcaacCATGGTA
ACGAGGACCCGCTCACCCCTGGTATCGGCTCTCAGCATACGGCCTTAACA
CAAATTGAGACGTCATCGGTCCAGATTCACGAATCGTTAAATGTTATTAT
CGATTATCAAACACATCATCGGTTAAGAGAGGCAACTTCTAGGGATAATG
CTGAATATTTGAATGAACGAGTCCAATATTGGTCTATAGGACAAGCTGTT
ATAATTTTAATTGTCTCGCTTGTTCAAGTTTTTGTATTGAAGAATTTCTT
TGCAGAGAAAAGGGACCGGATTTGAATGATTTTGAGTCAAAGTGCAAAAG
CTGTTTGGTTAGGACTGGCAGCAGCAAACAAAATGGaacagtttttgttt
gttttatttattgcaTCTAGTTTTATAACGGTCCATTCGGTAGAATTGAC
TTTTGAATTGGAAGATAATGCCAGAGAATGTTTCCACGAAACCATtgtca
acaaaacaaaatgtacaCTTGAGTTTCAGGTTGTAACTGGTGGTCATTAT
GACGTAGATGTGATAGTTAAAGATCCCCATGGGAAAATATTATATgatga
aaagaagaaacaataTGACAGTGTCAACTTTGATGCTGAAGTTCTAGGTG
AATACGTATTTTGTTACAGTAACGAATTCTCCTCATTCAGTCATAAAAcc
atttattttgatttcaacCATGGTAACGAGGACCCGCTCACCCCTGGTAT
CGGCTCTCAGCATACGGCCTTAACACAAATTGAGACGTCATCGGTCCAGA
TTCACGAATCGTTAAATGTTATTATCGATTATCAAACACATCATCGGTTA
AGAGAGGCAACTTCTAGGGATAATGCTGAATATTTGAATGAACGAGTCCA
ATATTGGTCTATAGGACAAGCTGTTATAATTTTAATTGTCTCGCTTGTTC
AAGTTTTTGTATTGAAGAATTTCTTTGCAGAGAAAAGGGACCGGATTTGA
ATGATTTTGAGTCAAAGTGCAAAAGCTGTTTGGTTAGGACTGGCAGCAGC
AAACAAAATGGaacagtttttgtttgttttatttattgcaTCTAGTTTTA
TAACGGTCCATTCGGTAGAATTGACTTTTGAATTGGAAGATAATGCCAGA
GAATGTTTCCACGAAACCATtgtcaacaaaacaaaatgtacaCTTGAGTT
TCAGGTTGTAACTGGTGGTCATTATGACGTAGATGTGATAGTTAAAGATC
CCCATGGGAAAATATTATATgatgaaaagaagaaacaataTGACAGTGTC
AACTTTGATGCTGAAGTTCTAGGTGAATACGTATTTTGTTACAGTAACGA
ATTCTCCTCATTCAGTCATAAAAccatttattttgatttcaacCATGGTA
ACGAGGACCCGCTCACCCCTGGTATCGGCTCTCAGCATACGGCCTTAACA
CAAATTGAGACGTCATCGGTCCAGATTCACGAATCGTTAAATGTTATTAT
CGATTATCAAACACATCATCGGTTAAGAGAGGCAACTTCTAGGGATAATG
CTGAATATTTGAATGAACGAGTCCAATATTGGTCTATAGGACAAGCTGTT
ATAATTTTAATTGTCTCGCTTGTTCAAGTTTTTGTATTGAAGAATTTCTT
TGCAGAGAAAAGGGACCGGATTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15174MSTRG.15174Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15174.2.p1MSTRG.15174.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15174.2.p1.exon1MSTRG.15174.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15174.2.p1.exon2MSTRG.15174.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15174.2.p1.exon3MSTRG.15174.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000132_pilongenomesc0000132_pilon:391472..397184 +