MSTRG.15142.3.p1 (mRNA) -

Overview
NameMSTRG.15142.3.p1
Unique NameMSTRG.15142.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000131_pilon:892970..898312+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15142.3.p1 ID=MSTRG.15142.3.p1|Name=MSTRG.15142.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5343bp|location=Sequence derived from alignment at sc0000131_pilon:892970..898312+ (Clytia hemisphaerica_ch_hm2_pilon)
CCAACATTCAATAGAAAACCTACTACAGATAATTCGTCTACAAAGGAGAA
GAATACGCGTTATCCGGATGCAAAACTATCAACTACAACTACATCTTATA
GAGCGCGGCGTCGTGAAAAGGAGAAAGCAGAAATGGATAATATATTCCAG
GTAAGCTTTTTGAAAGGCTGAGTTGCATAGGCCATTTTTGCTCATTGTCC
ACGTTAAATTGTTGGCAATAAATCAAGCTATTATTGCGTTTGATACACTA
AACGATTTAGCAAGTTATTTACTACCATCGAAGATTCTACCTTTTTtgat
tactataaaataaacttttaaatatactaaaaagaATCCTTTGAAATCGG
CAACAAGTGAATGGTTCAGGTAAGACAAGGCATCAGTTTTGGGTCATGTT
TAGTGAATTTACAAAATGCGCAAGATCAGAGATCAGTaaaaaaaGAGTCA
AATTCTTGTTGTCAATAAGGAGGTGATGGCATGGAAGCGTAGACCTAGAA
ATCAATAAACGCAACTAAAACGCAAAAATATAAGTTCtatcttctttctt
ttgatgAACACTTCTGTTATGTTTACAGGAATATTTTCCGCTGGAGAAAG
AAATTGATACATCGTCAACTTTCGATATGGATCGCATCTCCATGAGGAAC
GAAGAACGACtgaagaaatttaaacaaataGAATCCAATAACCACAATGA
CAATGGTAACATAGCTTTCACATTTTGCTCGCATTCTTTtgtatttgaaa
tatttgaagtATAAAGATGATTGTTTATACTCAGGTTAGTAGCGTGGTAG
GCCGACCTAATTTGAGGTAAACTGGGAGGCAAATAGTATTTAAGCCAGCG
AAATTAGCACgaaaattgttgatttttggGTAAAAACTGCCAATCTTGAA
GTGGAAAGTTGCTAAGGGGCGTTGAAGTAAGCGATCGAAGGCGCCTTTTG
GCCGCCAAATCGGCCGCTGAGGAGTAGCTTCCCCTACCCCTATCATTGTG
CTGCTCGCTCAGGTGTacattcgaaaaagttttaTCACAAAATTTACTAT
AAAAATAACTTATTTACTATAATAATAGAAAACGTAAAATGTAGAAGCAG
CAAATATAtagaacagaaaaaaatgaagcgactgcttaagtagaaatttt
cgtcatctttcgtgacttcatcagcatatagctcaacaaaaaatgatatc
ctttttaTAATGGAAGCTAGAAAGgctagaaatttcacaaaaacgtaaat
aataaaaacaatttaaaagctataactatgtacaataaaatatcataaaa
attctATTCGATTGAAATTCCCTagatacaataataaaaatatattccTA
TGAGACTGCataataataccgcagtaataatacaaaagaaatggctaaaa
tttgaaaaattaaatattaaaagaaaattcgcAAGGGAATATGCACGCAG
ACGTAGATTGAAGTATAAAAAACGACTAGAACTCCCTTCTGGGTTTTTCA
GAGAAATagtctaaaataaataaaatagaaatctAATTACATCGGATAAA
ACAGTAGATCACCTAAAGTGTATAAAATAAGCAAATATGTCTTAAAATAC
AACCCCCAAAGGGTAGCCCCCTAAGGAGGTCAACACAGTTAAGTGTAGCA
AAAGGCGCTCGATACTGAATACAAATgtaatcataaaataaaataaaatg
gagtTTATTGGGTCACAACTTCACATTCATTAAGACCATTTGGGAGAAGT
GTTTTAAGTTTGTATTGCCAAAACCTCTCCCGTTCACGGGTATCTTCAAA
ATTTCTACCCTGGTCGATAAGGGTAAATTCAAAATCAGAAAACCCAGAAT
GGCCGGGGAGATCAAAATGATTATGAAGATGTTGCTGAGAAACAATGTCA
GTCTTATGCCGTTTATTGCAGGACTTATAgtttgcaaatctagccctaaA
TTGAGTTGTACAGCTACCGACATACTGAATCCCACAAGTTTTGCAAATAA
GAAGATAGACGACATTAGTTGAGCTGCAATTCAGATGAACTCCTCTAATG
TCATAGGTCTTATTCTTGTTATCTGCAAAACCTGAGGTTTTCTTGACAAA
AGGACACATTTGACAGCGGTTTCCGTCACATCCTCCACTTGAGCCTCGGT
TGCCGTCtggagatgaaatttttgcacGGACTAAAAGATCTTTGAGGCTT
TTACCTCGACGAAACCCAACTATGGGGACATCACGGAAAACCTTTTTGTG
ATCTTTATCACCTGTCAACATGATCTGTAGTTTCCTAAGCAAAACTCCAA
GGTTCTGGAACGCAGGGTGAAACGTGACAGTAAGTGTTAGTTTATATGTT
TTCTCACGTTTCTCCTGACGTAAAAGATCCTTGCGCTTTTGTCTGCGCGC
ATCCAGAACCTTAGTTCTAACTAACTTCTGATCATACCCACGTTTAATCA
GCCACGTCTCCAGTTCGTTGCAGCGTAAGTCGAATTCATGGGGCTCCGAG
CAGATGCGATTAAGTCTAAGAGCCTGACTGTACGGAATCGAAGTCTTGGA
GTGAATGGCATGACAGGACGAAGTATCCAGATACTGGTGAGTATCTGTTG
GCTTCATGTAGAGATCAGTAGCTAGTTTATCCCCCTTGCGATAAACCCTT
ACGTccagaaaatttaaatataataactaactaactaactaactaactaa
ctaactaaatatatactataataataaataGCGTTTGAATCCGCTAAAGA
ATTCTTAGCAACATCGGGGTTTATTCCTCTTTGGTCTTAGTAATAGACAG
GGGGCTTGGGGCTGGATTTATTAgtagaaaagttgaaaaatggtGGATGT
GTAAGGCAAAGAAGTTTTTAATCCCTCCGTGCatttaattctttttcttt
ctcccAGAAACCGAGGACAATAACGGCGATGCAGATGATATTGTTCGCAA
GTTCATGAACCAAACGTAAGGTTTTAGACTCCTTATTTTTATCACATTCA
AGGACTTACTTTTTAAAACCACTAATGATTTGGGaagtattgatattttt
ttctactCTATTTCTGTTTCTAAACTCGAAAATGCCTATTTGAAATTATA
CAGTGATTGATGTCTGTCTCAGTATAGTCTGCAATGGaaaaaaaaTGCGA
GTTTAATTAGAGTGgaaatatgatatcgaaatcaaaaatagaaaaaaagc
gacaaatgaagatgaaaaataaagaagaagaaaatgcacTTCTTAAAATA
ACAGCGTTATAATTACCATTTTTGCACAAGtaattatttgatcaaaaaaa
agtttattactGATTGCTTTTAAAAATCGTCTTTGAACAAACTCTTTGAT
ATGAAAATTGTGATTCTGAAATATAGTAAAATTCAGCAAGAAGTTAACTT
TCTTCTTTACCGTAAATCCTCAAATAAGCGCCCGGtcgcttttttatttt
tttaggctctaaagggggcgtttattcaagcagggcgcttattcgagcgg
ggcgcttatttttttatttcagaaattcgtatatcaacaaattcggaatc
tgcctaaacttaactgtttcaaagggttgatttttcaaaaaaggatgaat
aaaagaaaaattggaaaaatccaattgacaatttctatcattttattctt
aagcgctttctttctttttaagacacaagtatttactcaatatcttattc
aatcaataacaatattcgaataagcgcccctccctggaaggggcgcttat
tcgagcggggtgcttataatattattttaactaaaagagggcgcttattc
gagcggggcgcttattcgaggatttacggtattTGTAATCTTCATTTTAT
TatgaatgtttttgaattttttctatttgataatattccactcctgatTA
TCTTTCAAACAAGCACAAAACGCCTGTCTAATTTGAATTCTACCAAAAAG
CTACAGCCTTTCTCTAGAGctgattattttgagacagactttatgatGGG
TGTTAGTCATTTAGATTCGTATTCAGATATATAGGATATGTTATCCTTGT
CGCTCTatctacaatcagcgccgaaatatttgACACAAAAAGGGAATTCt
ctcaaaactttgaaacagcAAGTGATTCTCAATtgctttgaagtacagtt
tggaagtagagttttaactctgagttttaacattagacttaagacttagg
accttaggatctcaggatctaaaagctcaaaaatattccaataaggctga
gaatatagcctggaagccacttaacccctcccaaatcgaaaaatccaatg
aagcaaagtggaaTTACTGAAACTGTAATTCTCACCCGAcctttaaactt
tgaaaaacgttaaaatacccaaaattgccaatatatttcggcgctgattg
tagatATCAATCTTTCCCATAATACCTTTCAGATGAATTTCTATATCCAA
AGGTGGCTCTTCAAAAggaccacttttgttttcacaCCCAGTGGCGTGGT
GGAAggggggctagggggggggccaggcccccccagcggagcccttttga
gaaggggcggccataaataagggacgccaagaaggatttttcaggcgccc
atatcgaaagattgacaaatgaaaaaacaaaaatggcgcccctcatcacc
tcaaaaactcaaaattttctggctcgcttcgctcgcaactcccttttttg
tgttcataatgggcgtatagagaggggcgccaaaaacaaaaaatctttaa
aaagggcgccatatttgccttggccaccccagagaaattttcccatcACG
CCACTGTTCACACCGATAGTATCATATCCGCTACACTTTGTTTAGTGCAT
TATTTCACCCTATAAAGATGCTAAATTATCATTTCGCGATGAAGAAGAAT
CAAATCTCTCTTATGTTTAGGACACTCCACGCAAACGTTCATGATGCAAG
CGAAACAAGTTTACCTTCAAGCAGTAAATTTTTATAATACCTAACTCTGG
ATTGGTTAGCTTTTCCTGACAGTAATCTTTGACATAATAGCGAGCtttaa
ataattgataatgtCTAATAGTTTGACATCAAGCTTTAAGTTTCGTGCAa
ccaaaactaattttattccaaattattatatcaaaaaaatcaattccatg
gtcaaaaaaatcaaacagctGGTATGTGGAGGATTATTTTCCTTGCGGTT
TTTACTGGTTTACTAGTTCTCTTTCATCCCTCAATGATAATATGGTATCA
GTCAGTTATTATTCGCACTATGCAGTGCTCTTTCATCCCTCAATgttgat
aatctttttgttcTGTTTCctattatttttctgaaaaatctca

Coding sequence (CDS) from alignment at sc0000131_pilon:892970..898312+

>MSTRG.15142.3.p1 ID=MSTRG.15142.3.p1|Name=MSTRG.15142.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1608bp|location=Sequence derived from alignment at sc0000131_pilon:892970..898312+ (Clytia hemisphaerica_ch_hm2_pilon)
CCAACATTCAATAGAAAACCTACTACAGATAATTCGTCTACAAAGGAGAA
GAATACGCGTTATCCGGATGCAAAACTATCAACTACAACTACATCTTATA
GAGCGCGGCGTCGTGAAAAGGAGAAAGCAGAAATGGATAATATATTCCAG
GAATATTTTCCGCTGGAGAAAGAAATTGATACATCGTCAACTTTCGATAT
GGATCGCATCTCCATGAGGAACGAAGAACGACtgaagaaatttaaacaaa
taGAATCCAATAACCACAATGACAATGAAACCGAGGACAATAACGGCGAT
GCAGATGATATTGTTCGCAAGTTCATGAACCAAACGACACTCCACGCAAA
CGTTCATGATGCAAGCGAAACAAGTTTACCTTCAAGCAGTAAATTTTTAT
AACCAACATTCAATAGAAAACCTACTACAGATAATTCGTCTACAAAGGAG
AAGAATACGCGTTATCCGGATGCAAAACTATCAACTACAACTACATCTTA
TAGAGCGCGGCGTCGTGAAAAGGAGAAAGCAGAAATGGATAATATATTCC
AGGAATATTTTCCGCTGGAGAAAGAAATTGATACATCGTCAACTTTCGAT
ATGGATCGCATCTCCATGAGGAACGAAGAACGACtgaagaaatttaaaca
aataGAATCCAATAACCACAATGACAATGAAACCGAGGACAATAACGGCG
ATGCAGATGATATTGTTCGCAAGTTCATGAACCAAACGACACTCCACGCA
AACGTTCATGATGCAAGCGAAACAAGTTTACCTTCAAGCAGTAAATTTTT
ATAACCAACATTCAATAGAAAACCTACTACAGATAATTCGTCTACAAAGG
AGAAGAATACGCGTTATCCGGATGCAAAACTATCAACTACAACTACATCT
TATAGAGCGCGGCGTCGTGAAAAGGAGAAAGCAGAAATGGATAATATATT
CCAGGAATATTTTCCGCTGGAGAAAGAAATTGATACATCGTCAACTTTCG
ATATGGATCGCATCTCCATGAGGAACGAAGAACGACtgaagaaatttaaa
caaataGAATCCAATAACCACAATGACAATGAAACCGAGGACAATAACGG
CGATGCAGATGATATTGTTCGCAAGTTCATGAACCAAACGACACTCCACG
CAAACGTTCATGATGCAAGCGAAACAAGTTTACCTTCAAGCAGTAAATTT
TTATAACCAACATTCAATAGAAAACCTACTACAGATAATTCGTCTACAAA
GGAGAAGAATACGCGTTATCCGGATGCAAAACTATCAACTACAACTACAT
CTTATAGAGCGCGGCGTCGTGAAAAGGAGAAAGCAGAAATGGATAATATA
TTCCAGGAATATTTTCCGCTGGAGAAAGAAATTGATACATCGTCAACTTT
CGATATGGATCGCATCTCCATGAGGAACGAAGAACGACtgaagaaattta
aacaaataGAATCCAATAACCACAATGACAATGAAACCGAGGACAATAAC
GGCGATGCAGATGATATTGTTCGCAAGTTCATGAACCAAACGACACTCCA
CGCAAACGTTCATGATGCAAGCGAAACAAGTTTACCTTCAAGCAGTAAAT
TTTTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15142MSTRG.15142Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15142.3.p1MSTRG.15142.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15142.3.p1.exon1MSTRG.15142.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15142.3.p1.exon2MSTRG.15142.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15142.3.p1.exon3MSTRG.15142.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15142.3.p1.exon4MSTRG.15142.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131_pilongenomesc0000131_pilon:892970..898312 +