MSTRG.15099.6.p1 (mRNA) -

Overview
NameMSTRG.15099.6.p1
Unique NameMSTRG.15099.6.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000131_pilon:229802..233477+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15099.6.p1 ID=MSTRG.15099.6.p1|Name=MSTRG.15099.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3676bp|location=Sequence derived from alignment at sc0000131_pilon:229802..233477+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTATAGATAAAATTGTAATCACTGTCAGCTATATTTGGCATCAGAAAAT
TCATCATCAAATtcgaattgaaattgaaatccaGACTTTCAAAGATATGG
CCAATAATTACGCAAGAGGTAATATTTCCTaatgtttttggacctacctt
aagaAGAGGTCCTATACATTAACCTATGCCCGTCCGTTcatccgttcgtc
cgtccgacCGTCTGTTATTAGGTTTTCTggggattggctcattcaatttt
tttgaatgagccaaaaaactgaaaaactgaATCTTTATCCCAAAGAATCC
TTATTTATAAGCTTAGATCAATGTTCCTAACCAAATAACTCAAGTTTTAG
ATAATAAATAGTCTCTTCCTTCCAACCTCCTCCCTTAATTCCACCCAATG
GGCACGGgggacaatcaatgatgaaaacacacccccttctcacagaccca
ctgggaaacccttcccactgaaaaaattggccaaaataacATCCCctgtg
gaaaattatcctccaatttttgtccccattgaagataatcaaataaactt
atcctcactgcaaaacaatttaaatatttttgttatccCCATTGaatctt
ctgacttgaaaacaaaagagttGACATCCggccagccataaaaaatatag
gTATATATCCCCACtgagttttagtccgttatttttatccccactggctg
aaaaaatcctaccgggtctgtgtgAAGGGGAATAACTTTAATAAACTGTC
ACTTTTTATGCTCTGAATGACTGTAGAAAAATACAGGACTGGTTCTgttt
tttaaggattttagaaTAAGAATTTGATCTCCTGCtttttttCTCGTTCA
TTTGTTCAGGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACAGCCT
TTGGCAGCAGGTATTTTATATTGATTATAAATAAACTCTTTATTCCATGA
ATAAAATTTTGACCCCTTAACTCGCATCAGTATTCTAGGATATTCGAATT
GCTCAAAAACAGTTTTATTAATGTAGATGCTTAACTTTTATCACGCATAA
GacaatcctaccgggtctgtgtgAAGGGGTTGTGAACGAACGAAGGATTT
AAATAAATCGTCACTGTTTTTAtattctgaatgattgttttaacGGTCAC
GCttacgtagatatcaattatatattgGTTagatgcataaccaggtaggt
ccataaaagtatcgcttatTAATATTTTTCGACATTGACTGTTTTGACTA
TGAAGAGACAAGACATACGCGAGAAAGTTATATTCTTATTAGTCAGCCAC
AAAAGGATTTTATCCACTCTTCAAAATGGCCGCTAATTAACTGTCCATAT
TGTTCTCTTGATTTGATAAAGAAAGCAGCAGGAGAAATTTTTCCCTTTAA
ATGGAGCTGTTCGCCTTTTTAAATTGCCTATCTGCAAATAATTTTAACAA
ATATCATGTTTCTTAGACTTGGACAGAGCCAATGACGAATATTGGATGAA
TTTGTGGTCGAACAATAATAGTGAGATTTTTCAATAATATTCTTCACAGT
GTTGTTCATTTTTTCTAATTCTTGAACAATTCCATTCGTAATGATAAATC
CTTTCTTAGTACAAACTAAACCTTGAAATCTATTACTATTTTTGTAGATC
CATCAAACAaacttttatatattttaaatgTGTGGCCAAATTGAAGcttg
agaaaagtttttttcaatttcagattGCTATTGGAAACATTCAGATTTCT
CCAATTTTCTATACATAGAAAAATACAAGACTGGTTCtgatttttaagga
ttttagaaTAAGAATTTGATCTCCTGCtttttttCTCGTTCATTTGTTCA
GGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACAGCCTTTGGCAGC
AGGTATTTTATATTGATTATAAATAAACTCTTTATTCCATGAATAAAATT
TTGACCCCTTAACTCGCATCAGTATTCTAGGATATTCGAATTGCTCAAAA
ACAGTTTTATTAATGTAAATGCTTAAGTTTTATCACGCATAAGacaatcc
taccgggtctgtgtgAAGGGGTTGTGAACGAACGAAGGATTTAAATAAAT
CGTCACTGTTTTTAtattctgaatgattgttttaacggtcacgctcacgt
atatatcaattatatattgGTTagatgcataaccaggtaggtccataaaa
gtatcgcttattaatattttttcgaCATTGACTGTTTTGACTATGAAGAG
ACAAGACATACACGAGAAAGTTATATTCTTATTAGTCAGCCACAAAAGGA
TTTTATCCGCTCTTCAAAATGTCCATTTTTAGGCAATCTTATTTTTCTCT
GGATTTGATTAAGAAAGCAGCAGGAGAAACTTTTCCCTTTAAATGGAGCT
GTTCGCCTTTTTAAATTGCCTATCTGCAAataattttaacaaatattaTG
TTTCTTAGACTTGGACAGAGCTAATGACGAATATTGGATGAATTTGTGGT
CGAACAATAATAGTGAGATTTTTCAATAATATTCTTCACAGTGTTGTTCA
TTTTTTCTAATTCTTGAATAATTCCATTCGTAATGATAAATCCTTTCTTA
GTACAAACTAAACCTTGAAATCTAATACTATTTTTGTAGGTCCATCAAAC
AaacttttatatattttaaatgTGTGGCCAAATTGAAGcttgagaaaagt
tttttttcaatttcagattGCTATTGGAAACATtcaaatttctccaattt
tctaTACATAGAAAAATACAGGACTGGTCCtgtttttttaaggattttag
aaTAAGAATTTGATCTCCTGCtttttttCTCGTTCATTTGTTCAGGAGCT
CCTGCCAATGTTCAAGAAGAGGAACATCAGCAGCCTTTGGCAGCAGGTAT
TTTATATTGATTATAAATAAACTCTTTATGCCATGAATAAAATTTTGACC
CCTTAACTCGCATCAGTATTCTAGGATATTCGAATTGCTCAAAAACAGTT
TTATTAATGTAGATGCTTAACTTTTATCACGCATAAGacaatcctaccgg
gtctgtgtgAAGGGGTTGTGAACGAACGATGGATTTAAATAAATCGTCAC
TGTTTTTAtattctgaatgattgttttaacGGTCACGCTCACGcatatat
caattatatattgGTTagatgcataaccaggtaggtccataaaagtatcg
cttattaatattttttcgaCATTGACTGTTTTGACTATGAAGAGACAAGA
CATACGCGAGAAAGTTATATTCTTATTAGTCAGCCACAAAAGGATTTTAT
CCACTCTTCAAAATGGCCGCTAACTAAATATCCATTttagagaattttat
ttttctcttgatTTGATAAAGAAAGCAGCAAGAGAAACTTTTCCCTTTAA
ATGGAGCTGTCCGCCTTTTTAAATTGCCTATCTGCAAATAATTTTAACTA
ATATCATGTTTCTTAGACTTGGACAGAGCTAATGACGAATATTGGATGAA
TTTGTGGTCGAACAATAATAGTGAGATTTTTCAATAATATTCTTCACAGT
GTTGTTCATTTTTTCTAATTCTTGAATATTTCCATTCGTAATGATAaatc
ctttctttctttctgtatttatttatttatttattaattaaaGGATTGAG
GTTCAAGGCACGCCGTTGGATCTAAG

Coding sequence (CDS) from alignment at sc0000131_pilon:229802..233477+

>MSTRG.15099.6.p1 ID=MSTRG.15099.6.p1|Name=MSTRG.15099.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1725bp|location=Sequence derived from alignment at sc0000131_pilon:229802..233477+ (Clytia hemisphaerica_ch_hm2_pilon)
AGTATAGATAAAATTGTAATCACTGTCAGCTATATTTGGCATCAGAAAAT
TCATCATCAAATtcgaattgaaattgaaatccaGACTTTCAAAGATATGG
CCAATAATTACGCAAGAGGAGCTCCTGCCAATGTTCAAGAAGAGGAACAT
CAACAGCCTTTGGCAGCAGACTTGGACAGAGCCAATGACGAATATTGGAT
GAATTTGTGGTCGAACAATAATAGAGCTCCTGCCAATGTTCAAGAAGAGG
AACATCAACAGCCTTTGGCAGCAGACTTGGACAGAGCTAATGACGAATAT
TGGATGAATTTGTGGTCGAACAATAATAGTGAGATTTTTCAATAAAGTAT
AGATAAAATTGTAATCACTGTCAGCTATATTTGGCATCAGAAAATTCATC
ATCAAATtcgaattgaaattgaaatccaGACTTTCAAAGATATGGCCAAT
AATTACGCAAGAGGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACA
GCCTTTGGCAGCAGACTTGGACAGAGCCAATGACGAATATTGGATGAATT
TGTGGTCGAACAATAATAGAGCTCCTGCCAATGTTCAAGAAGAGGAACAT
CAACAGCCTTTGGCAGCAGACTTGGACAGAGCTAATGACGAATATTGGAT
GAATTTGTGGTCGAACAATAATAGTGAGATTTTTCAATAAAGTATAGATA
AAATTGTAATCACTGTCAGCTATATTTGGCATCAGAAAATTCATCATCAA
ATtcgaattgaaattgaaatccaGACTTTCAAAGATATGGCCAATAATTA
CGCAAGAGGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACAGCCTT
TGGCAGCAGACTTGGACAGAGCCAATGACGAATATTGGATGAATTTGTGG
TCGAACAATAATAGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACA
GCCTTTGGCAGCAGACTTGGACAGAGCTAATGACGAATATTGGATGAATT
TGTGGTCGAACAATAATAGTGAGATTTTTCAATAAAGTATAGATAAAATT
GTAATCACTGTCAGCTATATTTGGCATCAGAAAATTCATCATCAAATtcg
aattgaaattgaaatccaGACTTTCAAAGATATGGCCAATAATTACGCAA
GAGGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACAGCCTTTGGCA
GCAGACTTGGACAGAGCCAATGACGAATATTGGATGAATTTGTGGTCGAA
CAATAATAGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACAGCCTT
TGGCAGCAGACTTGGACAGAGCTAATGACGAATATTGGATGAATTTGTGG
TCGAACAATAATAGTGAGATTTTTCAATAAAGTATAGATAAAATTGTAAT
CACTGTCAGCTATATTTGGCATCAGAAAATTCATCATCAAATtcgaattg
aaattgaaatccaGACTTTCAAAGATATGGCCAATAATTACGCAAGAGGA
GCTCCTGCCAATGTTCAAGAAGAGGAACATCAACAGCCTTTGGCAGCAGA
CTTGGACAGAGCCAATGACGAATATTGGATGAATTTGTGGTCGAACAATA
ATAGAGCTCCTGCCAATGTTCAAGAAGAGGAACATCAACAGCCTTTGGCA
GCAGACTTGGACAGAGCTAATGACGAATATTGGATGAATTTGTGGTCGAA
CAATAATAGTGAGATTTTTCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15099MSTRG.15099Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15099.6.p1MSTRG.15099.6.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15099.6.p1.exon1MSTRG.15099.6.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15099.6.p1.exon2MSTRG.15099.6.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15099.6.p1.exon3MSTRG.15099.6.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15099.6.p1.exon4MSTRG.15099.6.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15099.6.p1.exon5MSTRG.15099.6.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000131_pilongenomesc0000131_pilon:229802..233477 +