MSTRG.15039.4.p1 (mRNA) -

Overview
NameMSTRG.15039.4.p1
Unique NameMSTRG.15039.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000130_pilon:246870..255894+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15039.4.p1 ID=MSTRG.15039.4.p1|Name=MSTRG.15039.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9025bp|location=Sequence derived from alignment at sc0000130_pilon:246870..255894+ (Clytia hemisphaerica_ch_hm2_pilon)
ACAGGATGTCTTTGGAGATATGTCCGGGCAAGCATGTCATTATCAGGTTA
TCTACCACCCATTTGCGATCCAGAAGATGGCCATTTATTGCTAGATGGTG
GATATGTCAACAATTTACCAGGTCATTATTTTAACTTTAAGTGACACCAT
TTTACAGTTGATAATGTGAAAAGCGATTCTCGTACATAGGGTCTATTTTC
TCGTAATGGGAATGGGAATGTGCTTTTTAGACtgtttatatatatttttt
gccACTTAGTTTTTGCGCAAAATGAATAACTCTTGGCTCAAACATGACTC
GATGGAGTAATCATAGACGACTTTTTTAAGTTAAACTTTTATTTCAGCTG
ACATCATGTTATCGATGGGAGCGAAAACCATAATTGCGGTTGATGTTGGG
TCACGTGATGAAACTGATCTGACCAATTACGGAGATTCTTTAAGTGGCTT
CTGGATGCTGTGGAAGAAATTCAACCCATTTGCTTCACACGTTCGAGTAA
GTTAAATTTATCTTTGACTGAGGTTTTTATGTTGGATCGTTTTACCAAAT
ATTACCCCCAACACACCTCCTTTACACCTGGCCCGGTCAGATCAGCCCCG
GTGAGTAGCCCAGTGAAGGAAATACCCAAAAACAGGCCAAATTTTGGCAA
CCCCGGtcaaaaaataactaaaaatttaaacccgctcaaaaaaggaaaTG
CTTATTGCCCTGCCccgaaaagttgaaaatttgaaccaagATGTTTATTG
gagttatttttttatcaacctATTTCAAGGCTTCCAGTGACTCCACATTC
TAAATTCAATGTCAATCTGATTAGAAGTTCAAGATTTATGGCTTGTTTTC
TGTTTTATTAGTTCATGGGAAATTAAGACAGTTTTGCCGGTTGCAAATGC
CCATAATTatatgaaaatgttgaaatcaacaaactgaaaatgtatttttc
caagagaaataatatgaaaaacaaaagtaaatatCTTTACTAGCGCCTCT
TAATGGCGATTTAGGCTATTTAAGCTGTATCATTATATCAACAGTTTTCA
GTGATATTGCATGAAACCGAATCAATCAAAAGATTAGTACATTGAATctg
caaaaaatattcttattgaTGTAATCTTAAATTTTTTCCTAAGGGTGGAT
TAGAAGATCTTAAAATTCCAACACAAATCCCCAATCATTTGTCagtttca
tttctttttcactttattagttttcttcttatttctttagaagcatcttt
taaactttcCTATACACTTTGAACATTAAATAAAaaggagtctgctaaat
tgcgtgggatgcgtgggtgcgtgggtcaatatttttgcgtgggtcattgt
TTTGcctgggtgcgtgggtcaaaattttttttacgtggctcaaaaatttt
gcgtgggtcaaatgttttgcgtgggtcatatttttggtgtgggtcattat
tttttgcgtgggtcattattttttgcgtgggtcattattttttgcgtggg
tcaaagtttttgcgtgggtcactattttttggtgattttttagcaaactt
gaatttttttaccaaattaaaactttcgagttagctaactcgtttttttt
tgtcaaattaaaattttcaagttatcttatacaaaaatgtgttgtgtatc
tacgaaaactaaacaaaagcacACTGTTTTTATGTAACGCGTTGTGGTTT
ATTTTGCATATCTGCACTTATTTACTATAATGGTATAATATTATACAGAA
TCAACACACACCACATACTTCAGGCAGCTTCAGGatcacacttttgaatt
ttagcatgCTATATTTCAGGATTCCAGTGTCATGGAAATAAACCCTAtaa
ctttaagcaaaaaaaatgagatatgactGTTCATTGCTTCTTTCCTTTCT
ATTGAATTTTTTCCTCCCtttttctcttgctttgaaaaaaggtacagcgt
ctttatttcgtccaattttttaaattggcctTCTTTATGTActtaaatca
aagaaatcaCAGGTGGGGTGGACGAAATAATTGACAACGATTAAATTGTT
TAGTAATCGGTCGCCTAATGAATATAACTTTTgtggaaaaattttcagat
tttgtcgcCATTTGAACACTCAAAGGAAACCCAAAAGATTAAAGCGCGCT
ATAAGAAGCTATAAAAGCTGACATGTTCAGTCAGtggaattaaaaaatat
aaagccgCTTGATTGTGTacatttttttggccattcttAGGTATATACAA
AACTTATTAATTTTGGACGAAATCTCCCAAAAGGGAAAATTCCACTTATA
AAAAGACACTCCCCGCCCTGTTGGAAACAGTCTTTCCAACCTCGTTTATT
GGAACAAATTCACCATATTCAGAAAGTACGGAACTGTACAGCTatgtaaa
ataaacaaaataaaccaaaacgtgTTATGTAAAATACATTcaacattttg
gatgtgaccagttcgaatttcaaggtaaggcattttttcgaattacagag
agaattttGATCACGCAAAagttttgacccacgcaaaaaaataatgaccc
acgcaaaaaattagacccacgcaaaaaatatgacccacgcaaaaaaattg
acccacgcaaaaaatttgacccacgcacccacgcaaaaaaatgacccatg
caaaaatattgacccacgcacccacgcaaccacgcaacccacgcaattta
gcagactcaataaaaagaaagctaataaagtgaaaaagaaatagaaGTGA
CAAATAATTATGAATTTGtgtcaaaaaaactttgaattttctttttaacc
taAAGTGCTTTCCATCATAACCCTAGGAACAAATTCAAGATTTACttcaa
tagaaatatttttacagatTCAACGCAGttattctttttgattttgggtT
ACATGCAATTTAACTGAAAActgatgaaaaattgaatcatacCAGGCATA
CAGCTTGACCACCAAATCACCAAAAAGCGCTAGGAAaggtattttctttt
gtttttttccgTGCTAAAAGGGGTATGTTTTTCCTCTATCATTTTCTCGG
AAAAAGCataattattttgttaatttccactttttatttcatttgatata
ctgatggcgaaattaAAAGTATACACGAGATTTAAAGACGCCGTCGGGCA
CTTTTCTAAGTTTCAGGGGCCGCAGCATTTTTCAAAGCAACAAAACTTAC
TAATCATCAAGCCAAATTCGGCTTAATAACCTTGAAACAGACCTGTTTTA
GGCGATCTAGAAGggctaaaattaaaaagtttttgccCGTTGTCACCAAC
CATAGTGGCGcctccgcaaattttttttccgtagacaggcggaaatatct
ttaatggtcggaaatatcatagcgtaatggtcggaaatatcatttgatgg
tcggaaatatcttttgatggtcggaaatatccaaaactctaaaaatttga
aaatttaatggtcggaaataccccgcgcttttaaaaatgcttcatcagca
aaaaaatgtaaacaaagatagtactcttgtctcccgaatagacggggggg
tccgaataagcagggggtaggaaaatgttctaaattctaataagcggggg
atggaataagagggggggggttatttgaagacagaatttttttaaactaa
tatcaatttcaacaacaaaaaaagaaactttaacaattgaacacgtaaaa
taagaaccaatactaacaaaaaggaagattttaacaagtttaaggtctat
ctacactgtaataaaatattgaattattcaaatttaattagcgggggggg
ggtcttaataagagcggggggatggattttttttcatttaacatttagcg
ggggggacgtctattcgggagacaagagtagcaaaggtggtgttgtgtgt
gccagacaagctttttagggagagaaagtggtattgacctttttattcaa
acacaactcttcgttctttcttttcttttttatatactTTCCTCCTCTAG
CCCCCACTGTAAGGGTCATCTTTTGGCAAAATGTTCTCTGCATGCACTGC
CAGctggatgcactgtaagggttcgattttggaagccaaattttccgccg
aacgtatggtcgttttcagatcgatcCACCAGGGTAAGGTCTAGAATGGG
AGGGTGTCCAGGTAGGGTTGGGACTAGCTTTAGGGTGATTTGAGAGCAGT
AGGGGctagaggaggaaaggatataaaaaagacaagaaagaaagaagagt
cgtgtttaaataaaaaggtcaataccacTTTCTCTCCCTAAAAAGCTGTC
TTGTGTAAAATACTGTATAAATAACTACGAAACAGAACAGTTCTCAGTCA
GTGtcccaaaaacttaaaataaaaaactactcTTGTCTGGCACACACACA
ATTTGGCCACACTGcaccacctttgctaccatctttgtttacattttttt
gctggattaagcatttttaaaagtgcgggatatttccgaccattaaattt
ccaaattttcagagttttggatatttccgaccatcaaaagatatttccga
ccatcaaatgatatttccgaccattacgctatgatatttccgaccattaa
agatatttccgcccgtctacggaaaaaaaatttgcggcgCCTCCTTAGTC
AGTACATCATgaccctatcactttcaaagtgaACGCGTCCTGTGTTGGGA
ATCAAATTTAAAGTATAAATTGGTTCAGTACAAAGATTTTATTATGGGAA
GAAtttttttGCGTATTCACAATCTTATGAGGCTAAACAATAccataaaa
aacaacattttataACAGTTTTGATCCCAGAATGACTGAATCTTAAGCCA
AATTGAGGTTTAGTAGTAAAAGCAGGGGGTATAAACCTGAAATGCCTCAA
CATCACCATCAGCCTCTAGAACAGCTTTTGAACTATTTGAGGCTTGAAGT
GCCATAAAAACAGCCGAGcgtcaacaaaaatttactgaaTCTCATAACAA
AATAGTGTACCCCGGTGAAAATTTTCCTCCAGGTAAAATATTTTCTCGgg
gtaaaatattttcactttttattttgcCATGTTTTCCAAAGTTTAATTAT
CGCGTATTTCATTATTAAGATTCCAGACATGGCAGGGATTCAGAGTCGTT
TAGCGTACGTTTCATGTGTACGTCAACTGGAAGAAGTCAAACATGCCGAT
TATGTCACCTACATTCGACCGCCTATCGACAGGTTGCTTGCATTTCTTTC
ACTATTGAAATGAGAATCCATGATATTCTACAGCTTCacgatttaaattt
tcaaaatcggtTTTAACTAATTTTGAAATCGAAATCAGTAAATATAAGAT
ATAGCACATTCTAAGGATTGACCTTCTTTTAGAAAAGACTTAAAATACTA
CCTCCCAACTCTGGTTTAGTGTCTGTATGATGGCCACCAATGGAGCATTT
GTTGCAAAATCCTTTTGATTCTCTTTCAGGTTCAAAACGCTTCAATTTGG
AAGTTTTGACGAAATTCTCGTAAGTTTTATTCACCTTTTGATTCCGTgta
acaaattccaaaaaaggaaaaaattaaaaatcggTTTAGACCTAGCGCTC
CGGTATGGTATTTTTTACGGATAGGAAGTGTTCATACAGATTTTAAATAC
TGATGTTTCGGAGCAAcgaaacggagcagttccgttacAATGAAAATAGT
GGACCGAAACCGTTTCggtctgttttgctttgtaacggcTTCTATACGGA
CGTTCCGATTTTTACGTTTACACaatgtttcggaaccgtttcgtttcgga
gcgataCAAAACCTTaagtctgaacatggtctttgTCGAAATATGTTGAT
CCTTTGAAACGTTGTTCGCTGCTTCGCTTTTCTTTTAACAGGAAGTGGGA
TACACACATGGCCAAACAGTGTTCAACACCTATTTTACCGAAAGACTTTT
TCCATCAACCAATAATGAAGAATCTCTCTCAAagcaaaaacaacaaatta
ccATTGTACGTGTGTTACTTTCTCCTAAATCTATTAGCAAGCGTAAAACC
TTAGGTTCCTAAAGCAAAGTGAATTCATCATATAAAATTCTGTTGCACAT
AGCAATTGATAACAGGAAAATTTTGAAGGTAAtaaattttaatagatttt
aagaGAAACGATATTTCTTCATTCATTGGTGATTGCCGTGAAAGACAGTA
TGAAAGTATGTGTTTGAATATGAAAACGGAAtacaagcagaaacttttgc
tattttcgcgaattttggcccttttcgcgaaagtaaatgcctttaaaaat
tcttggaagtgtcattcacgaaagtttatgctcgcgaaaaattcttgaca
tagaaaatctgtaaaatttaaaactttgaataaaatgtaacatttgtttc
actttttagcctgttaaAAGATTAATAAGTCAAAAGACAATCGAAGAAGT
ATTTATCCCTCTAATCGCACGATGAACTAtttttttCCTATTTGGCgctc
cttcaaagagagcaattaatcgttaattgcatcctttAGAGAGCAATTAA
TTGTTAATCACTTCAATGCGGcgctagtctagcaagctagacgactaatt
tatacatagtagaaataaagcaaaaagtaatgaatggaataattttagtc
gtctagaaacctttgtgcacttactccaaacaaaagaaaagtgtcaatat
tgcaattataattttttcctgttcaaaataattcttgagaaaaaaaatat
gtgtggatttgtgtattgaaagtttttcatttgagttgatttcgttttga
gagtttgttgttgcttgataaattgttttctcgctacgcaagtttctgcg
tagctagcccctgtatctataaggctggaacaccggattcttccagtcgt
ttatacaaactaaatcccgtattattattattagtattgatattattagt
attacacgcactataaacgactccagtctaatgcGGCGCCAATTTTACaa
tattgattttaatgttttttttatagttttttttcatcgaacgttttaat
tgcattcgaaattagttttgtgaaaaagaaaaacatttaaagagaagaga
aaaatataaaactttcagtgtaatttactttcctgacgggaaaaagtagt
gaaacaaattgtgcgattagctcgtaatcacataataactcgtacaattc
gaaaattgcactcgtgatttttttgtttctaattttcctcgtcctttccg
accgaaaattattaacaaaaaatcactcgtgcaattattctcgaattgca
ctcgttatcatgtgattacatatatactaagccattttttcatgtgaaaa
ttttaatttctacgtcttgattcgcgaaagtttatgctcgcgaaagttta
tgctcgcgaaaaagcTTTTTccgtcaaattcgcgaaattaaatgtcgtaa
attttgtgatttttcgacctcgtgaaagtttctgcccacgaaagtttgta
cacctaaagtagTTCTCTTgttaaaaaaggtaaaagtgCGTTATGAATGC
ATTGGAGGGTACATTCCATACCGAGTATACATTGCGTTTATCTCCTTCCT
TTATCTGCCTATGGTTCTCCTTGAAGGATTTTCTGTAGAGAAGTGTTTTT
GTGGCTGCTATTCGGTTGAAGGAGTGTATATTTTGCACGCATATTCTGGT
GTCAAACAAATGGAATTATAAACCCTTAAATATTTATGTTGTTTAAATAC
TAGGATCGTAAAACAGCGCCATCGTTTACCGACCTGACGCAACTAGTGGC
TGTTGTAAAGACACCCAACGTGCCGCAATCTGTGTTGGAAAAGCGCGCAC
AATTATTCGAGTACAGATCGGCAGACGAGGAGAGCGATCACAACGATGAC
CAGGTAGATTACTACGCACGACAACGAGGTGGTTCGCTCACCGAACAGGA
CATGGGTCGGGAGAATGAAAGTCAAGATGAAGGTGGTTATGAGGTAAGGA
TGGTGGGGTAATTTTCTCCATAGGATTATGTGATTTTTGAAGAATGATTA
TGATTTTGTTACCTACTTTCAACTTGTTGGCTCTTTTCACGCCTGACCTT
ATTAGTGCTGTTTTCGGGCCAATGGTGGATTAAGAGCCAGTGAAAGAAGG
ACCTAGTTTTTGTCGGCGTAAAAGGATATTGTGTGCTTTAGCGCCGATAA
TCTAGAACTTTAACAGGATAAGGACGCAAATGAGAAAGGGGCTGACAAAA
AGGTCAATAATCAATGTACTTAGGCATCTCGACTAAAAATTGGTAATTTG
AAAAGTGTCCTTCTTCCACTAGTTTGTTTATTCCCTCTTTTACAGTCAGA
AGATACCACCAAGGTGCGGCATTCATACCATCGACAATTCAGTGCCACGT
AAACTCCATGTATAACCGATAGCTTTTGAATTCTTGAAAGAGAAGTCGTg
cacgaaaaaaaaagaaaactttactAACGTGGTAACGGCAACCTGGAGAA
GGTATACGTGTTCATTGTTTGATCATAAACGTTTTTGAAAGCAGGATGCC
TTCATTTTGATTATGAATTGCACATTTATTACTTCATCTTACATGGAAAC
AGATCTCTTGATGATGACGAGCTCAACATAAGTTAGATTTTGATGGTGCA
GTATATAGCTTTATAATGAATCTTGTACGAAAACAGTTTTATagcgaaaa
ttcaaaattatcaatttaatttaatttaatttcaaaatttcccatTAGGA
GGATAACATTTTTTGTGTGCACGCACAATAATAAGCaaatattcaagtat
tttcgatatccgattaTTTCAGGTTGAATATGTTTTATCGTTCCCTCTTT
AGCAAAATATGCATGTTCCTCCTttccactttcaaaaaacttcgatgTCA
TATTCGAACGTTTCACTTTCTCAACTAAACATGTCgatttcatttcattg
ttttctctTTAATTACCAGAACATTCGAATTCATTTCTCTTTGATATTTT
ATCCTTTTTCGTTaatttaaaaaga

Coding sequence (CDS) from alignment at sc0000130_pilon:246870..255894+

>MSTRG.15039.4.p1 ID=MSTRG.15039.4.p1|Name=MSTRG.15039.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=900bp|location=Sequence derived from alignment at sc0000130_pilon:246870..255894+ (Clytia hemisphaerica_ch_hm2_pilon)
ACAGGATGTCTTTGGAGATATGTCCGGGCAAGCATGTCATTATCAGGTTA
TCTACCACCCATTTGCGATCCAGAAGATGGCCATTTATTGCTAGATGGTG
GATATGTCAACAATTTACCAGCTGACATCATGTTATCGATGGGAGCGAAA
ACCATAATTGCGGTTGATGTTGGGTCACGTGATGAAACTGATCTGACCAA
TTACGGAGATTCTTTAAGTGGCTTCTGGATGCTGTGGAAGAAATTCAACC
CATTTGCTTCACACGTTCGAGTTCAAAACGCTTCAATTTGGAAGTTTTGA
ACAGGATGTCTTTGGAGATATGTCCGGGCAAGCATGTCATTATCAGGTTA
TCTACCACCCATTTGCGATCCAGAAGATGGCCATTTATTGCTAGATGGTG
GATATGTCAACAATTTACCAGCTGACATCATGTTATCGATGGGAGCGAAA
ACCATAATTGCGGTTGATGTTGGGTCACGTGATGAAACTGATCTGACCAA
TTACGGAGATTCTTTAAGTGGCTTCTGGATGCTGTGGAAGAAATTCAACC
CATTTGCTTCACACGTTCGAGTTCAAAACGCTTCAATTTGGAAGTTTTGA
ACAGGATGTCTTTGGAGATATGTCCGGGCAAGCATGTCATTATCAGGTTA
TCTACCACCCATTTGCGATCCAGAAGATGGCCATTTATTGCTAGATGGTG
GATATGTCAACAATTTACCAGCTGACATCATGTTATCGATGGGAGCGAAA
ACCATAATTGCGGTTGATGTTGGGTCACGTGATGAAACTGATCTGACCAA
TTACGGAGATTCTTTAAGTGGCTTCTGGATGCTGTGGAAGAAATTCAACC
CATTTGCTTCACACGTTCGAGTTCAAAACGCTTCAATTTGGAAGTTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15039MSTRG.15039Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15039.4.p1MSTRG.15039.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15039.4.p1.exon1MSTRG.15039.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15039.4.p1.exon2MSTRG.15039.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15039.4.p1.exon3MSTRG.15039.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15039.4.p1.exon4MSTRG.15039.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15039.4.p1.exon5MSTRG.15039.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15039.4.p1.exon6MSTRG.15039.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000130_pilongenomesc0000130_pilon:246870..255894 +