MSTRG.15020.3.p1 (mRNA) -

Overview
NameMSTRG.15020.3.p1
Unique NameMSTRG.15020.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000129_pilon:929320..934500+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15020.3.p1 ID=MSTRG.15020.3.p1|Name=MSTRG.15020.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5181bp|location=Sequence derived from alignment at sc0000129_pilon:929320..934500+ (Clytia hemisphaerica_ch_hm2_pilon)
GGGAATGCGAGATAACATACCTGATGTCAAAGAATTTAtaatatgaaatt
tttattgGAAAATGACAGAAAAATAGCAATAAAAATAAACACATACCTTA
GACAGAACACCGACAAAGCATCTGCACATATCCATGGCTGAAACATAAAA
TACACATTACACGATATATTAAAACATACAAAATGTCTTTCGCTTCGTGC
TACAATGACACCAAATCTTTCTCAAGCTTGGACCTGCTTTATGCTGTTTA
CAGGTAAATAGAGCGGTACCAAGAATAACTAGCAGGTCAATGATTGCGGG
ATAACAGTTTGAAATGAGCTCAATATCCCTTAACGAGAAACTAGCGAGTt
catctacacgtttttttataagaacaagctatataagaacataaggcttc
aatagccaaaatgttaagaacaagttaagaacattttaaggcttcgcgga
ctcgcCCAATTTCTTAGGACTATACtcaaaaaataacgaaaataagaacc
caaaaatgacgaaaacaagaacatgttaagaacactttaaggctaaaagc
tcaaaaagttaagaacatctgaaggcttcaaataatttggatgttcttat
aaaaaacgtgtatcacgTATAGGGGAGAGATAGATAGCTTTTCATTCGCT
TATatcctaaaaaaaatttccacccaggacattcttattccccccccccc
cccccccccccgcttattaatttttgggaaaatatttttgaaagttccct
cttttgtcctaattctgctttattagcctccttttcagaaattttccacc
caggacatttttattccaaccccctccccccccgcttattccaaacccca
cggctattaggtacccgagagtacataAACTCGCTGCTCTATCGGGGGAG
TATAGAAATTGttaatttttgttaatttattcatattttcttttcatttt
aggGCGCGTGGGCGTGGGGGAATGAACTTGGGACCGGGCGGAATTTCCGC
AAACTTTAACACTGACAACTCAACATATCAAATCAACGCAAACAATACAC
GTAATCACAACATGGGCGGGAATGGGCGTAAAGGCGCCATGAATATGAAT
GGAGGGCGCAGAATGGGCGTTAATAGGATGACAGTAGCAAACAGCAAAAC
AGGACACAGCGTACATATGAGAGGTaaacaagttaaaaatttaagccgtt
ttttcaaacagtgaagttttgaaaaaaatcattattttgagTGCAGCGAC
ggtctcgttttgaaaccattatcAAGGTGATCAACTCCTTGAGACTTCAA
GTGTTACTTTAATAAATTGGAACAAACTTCCTATGAACTCCTCtcggaat
caattaccatagcaatattttggtaaggtaaggtaagcgttgctcgtgac
tTAATTCATCAAAAAGTCTATCAATTTTTTACTAAGAACCTGTTtaacaa
tttttgctcaaaagcATGGGCCAAGACCATGATAAATTTAGCTTACCTAA
GTATAACttacatttatttttattccGTAGGGCTTCCGTTTGAATCTACA
GCTGCTGATGTCATCAGGTTTTTCGCACCTTTACAGCCAGTAGATATCCG
ATTGTTGTACGAGTCAAACACAGGTACTTGATTGTTTCTGGCTTGCTTTA
GATCTggtaaaaagaataaaaaatttgaccaacttttgattttgacataA
ATGGAAGAAATAGGTACAAGGGGATAAAATGGTTGCCGGGTATCTGTGAA
CCTGTCTGTCCAAGAGTTTCAAACAACACATCAAGTTGGTCTTTCTGGGG
TCTTGTTGGGCTGGCAGCATCCCTCTGGTTTGTTGTGACAAAAACTATTT
TGGGGATGCGCATTTCAAGGTCCAGCCCATATACCCGACATTCCCCACCC
CAAGAAAATAGAGTCAAAGAGTAGATGTCTTGTGCATTAAGTGGCATATC
ATTGTGAGATCAAAGAATACATATTAtcatacaaagtaaaaaaataagca
aaaaatatggaattgtagtttatacaaactgataccgtaacaattatcgt
attatcatttAACACCCCCATCACTGTATTGGGCTATTCTAGAAATAGGC
TGCACccctacccagctggcacacaatgttgtttcaacgttcacctaacg
ttatatggacgttatgaacattagataaacgttgaaaaaacgttgtgtgc
cagctgggtatgtTGAGGAGGTGAGACGttcagggtggtctggaaaataa
aaaatccaggatGGTCAGTATAAcaaggtcgaaaatccagggtggtctaa
agaaatgggagaaaaaaatccaagggggtcctgaaagattggaaaaaaat
ccaggggggtcaacaaatttttttctggaacagcCCATTATAAGGTTTac
aaacgactccagtctacttaAGGCTGAATATAATATAAtaccttttttga
aaactctCGTCCATTTTGTGATGTTTAGGTCGGCCAAAGGGAGAGTGCGA
TGTCGATTTCACAACCCACCATGATGCAGAGGAGGCTATgaagaaagata
aacaaaaTATGGGTAAGTGTGTAATTTACTGACCAGAATGGAAGGCGAAA
TGAAATTTAGAGACCAGAAATCAGCTCATGATGATCTGATACTTGATGCT
AGCTAATGATCCTCAAAAGAAACTgtatgtacacgctttttttgtaagaa
tggtgtaaatccattgcATCGTGGATATTCTTAATCTTAActcttttggg
aaaatcatcatATAATAGTGTTAACATGATGGcaatattcttacgatatt
cttaattttttggctattttcatcatggacattcttataaagtgtatttt
tataaaaaaagcgtgtagtacaATAACTGTAAATTCAATTGAAGACAAAT
TATTAAAAGCACCGTTTACAACTTCTGGAATTcttgattgaaatttttgt
tgcttATGAAAACCAAACTAAAGCGTCTCGTAATGCAGTTTTCACAAGGT
TAAATTAATGACCAgttttaaattatgaaaaacaatgTCGAAAGAAGTCC
TTCTGAGGTTATATTAACATCTGccagtagcgagtttatgtttttttttg
caattttgaggacggcggagtgactgaagcgattttgaAAATCTAACTGT
TCTGACCCGCAGAATTTTAAGGACAGGAAAaggtgctgatttaccgtcgt
cctcagttggtcaggatCTAAACAAATCAGAAGTTAACTATCTCCACCGT
AGAAAAGCAAAGATATAAACCTAGCTAATTTGTAGCGACACGACTGAAAT
CGTAgactatttttcttttgatctcttttctccaggacgtaaactatttt
tcttttgatctcttttctcCAGGACACCGATACATTGAATTGTTCTTGAA
ATCCACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCATCG
GAAAAAGTAATTAGTATTCCACTTGAAATTTCTTTCCAACATATTTTCAT
TGAATGAACACGTGGAGAAAATCAGTACACGAGGCCATTTTCGagtaaat
tttggtccattcaGATTCCAAAGACTCCCCGTTTTTTACTCACGATAATA
ATAAAAGTAAGAATTAGGTAACTTTCGCACACTATATTACGACTGCTTGC
GGGACGTGAATGCCTTGAAAATAATGCACCccttttgaaacaaaaacttG
AAGGAAAGCAATCCAAGCTTTTGATATTCAAACAGGACAGGACAAGAATG
GGCTTAAAGTGTAGAATGATCTTTAGAGGGGAATTTTTACAAGAGATGTA
ACATAACATGGCTCAGTTCATTCAAAAAAGGACAGTTAGCTAAGTTCGGa
ctcttttatcattttcagatTAAAAATTCTTTAGGTTCTCCTCCGTTGCT
TCTCTCCCATAACAACAACAATCGCTCCTCCATCATTCAACAACCAAACC
TAAATAACATCTACGCTGGAGGCTTCAACAtcacaaaacaacaacaaaca
accaATCAGAATCGATTTAACACTAATTCCTTACCTCCCATTGGTTGTAA
TTTCAATAACAACACTCCTTCGTCGTTGGGATTTGTTCGAAAAcctcctc
ctcctccctcctccGTGGATCCTTTTGGAGCGAACCGAGTGACACGTGat
gatttgaatttcaaagataCATCACGTGATCTAGACTTGTTGAGTCAGAC
GATCCATAATGGCAGCCAAACTATTCAAAATGGTTGCAAAAGTAATGGGG
TTCAAAGTTTTTATAGCAATGCGATTATATAATAGGGTGTGACTTgattt
tgaattcaattttttgattatgGTCAGAAGAattttgtgtatattttatt
aaacgtgtgaattttctgtttgtttatttaattttttatgcatttgaaat
tattattttttaaatgatgaaaaagaatatttgggatttttttattaggc
tttcatgattatttttttgtggttttttttggagaaataattttgggagt
gtatataaagtatattttaatttttgttcagtttttgaattcttttgagG
GATAAATAGGAGATCAAACTAAAGAAGGACTTGTGAACAAAAGCCAGTAg
gagcaatttttGtttgaatacctTTGTTCTTGGTAAGTGTTAGCTAAGCC
TCGATTGCTAACCTTAATTTTGTTTGACttgcttaaaggttttgtttttA
tataagagtgatatcgtttgcttactcgtcaattttAatttataagcttt
tttgcATtgaatttacacggatgtggagcaagattggtcaGaaagaggGA
AAGAAaaacattttttgcttatatcagcacaatataataATAGATAGTGT
CTGCCTAATATGaaactgatatgaaacatgtgtctgatatgaaacgggga
cacttatgtaaaaataaaacctttaagagttCTAGAAATGGCTTTAAGAT
GTTCTAGACAATAGTTTGGTCAAACTGAAAACGTTGAAtgaaatttactt
tttatttttggatgAAGGACACTTTTTATCACAAAAGGAATAGGCCTTTG
ATAAGAATATCTTCAGAACAGATTGTACATAGGAATTTTATAGGTATTAC
ATAGCATGGTTtagagatgaaaagaaaaatagtattgaaaatgaaaacaa
ttttctttctcaaacCTTCTTTATCAATACC

Coding sequence (CDS) from alignment at sc0000129_pilon:929320..934500+

>MSTRG.15020.3.p1 ID=MSTRG.15020.3.p1|Name=MSTRG.15020.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5706bp|location=Sequence derived from alignment at sc0000129_pilon:929320..934500+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTTTCGCTTCGTGCTACAATGACACCAAATCTTTCTCAAGCTTGGA
CCTGCTTTATGCTGTTTACAGgGCGCGTGGGCGTGGGGGAATGAACTTGG
GACCGGGCGGAATTTCCGCAAACTTTAACACTGACAACTCAACATATCAA
ATCAACGCAAACAATACACGTAATCACAACATGGGCGGGAATGGGCGTAA
AGGCGCCATGAATATGAATGGAGGGCGCAGAATGGGCGTTAATAGGATGA
CAGTAGCAAACAGCAAAACAGGACACAGCGTACATATGAGAGGGCTTCCG
TTTGAATCTACAGCTGCTGATGTCATCAGGTTTTTCGCACCTTTACAGCC
AGTAGATATCCGATTGTTGTACGAGTCAAACACAGGTCGGCCAAAGGGAG
AGTGCGATGTCGATTTCACAACCCACCATGATGCAGAGGAGGCTATgaag
aaagataaacaaaaTATGGGACACCGATACATTGAATTGTTCTTGAAATC
CACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCATCGGAA
AAAGTTCTCCTCCGTTGCTTCTCTCCCATAACAACAACAATCGCTCCTCC
ATCATTCAACAACCAAACCTAAATAACATCTACGCTGGAGGCTTCAACAt
cacaaaacaacaacaaacaaccaATCAGAATCGATTTAACACTAATTCCT
TACCTCCCATTGGTTGTAATTTCAATAACAACACTCCTTCGTCGTTGGGA
TTTGTTCGAAAAcctcctcctcctccctcctccGTGGATCCTTTTGGAGC
GAACCGAGTGACACGTGatgatttgaatttcaaagataCATCACGTGATC
TAGACTTGTTGAGTCAGACGATCCATAATGGCAGCCAAACTATTCAAAAT
GGTTGCAAAAGTAATGGGGTTCAAAGTTTTTATAGCAATGCGATTATATA
AATGTCTTTCGCTTCGTGCTACAATGACACCAAATCTTTCTCAAGCTTGG
ACCTGCTTTATGCTGTTTACAGgGCGCGTGGGCGTGGGGGAATGAACTTG
GGACCGGGCGGAATTTCCGCAAACTTTAACACTGACAACTCAACATATCA
AATCAACGCAAACAATACACGTAATCACAACATGGGCGGGAATGGGCGTA
AAGGCGCCATGAATATGAATGGAGGGCGCAGAATGGGCGTTAATAGGATG
ACAGTAGCAAACAGCAAAACAGGACACAGCGTACATATGAGAGGGCTTCC
GTTTGAATCTACAGCTGCTGATGTCATCAGGTTTTTCGCACCTTTACAGC
CAGTAGATATCCGATTGTTGTACGAGTCAAACACAGGTCGGCCAAAGGGA
GAGTGCGATGTCGATTTCACAACCCACCATGATGCAGAGGAGGCTATgaa
gaaagataaacaaaaTATGGGACACCGATACATTGAATTGTTCTTGAAAT
CCACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCATCGGA
AAAAGTTCTCCTCCGTTGCTTCTCTCCCATAACAACAACAATCGCTCCTC
CATCATTCAACAACCAAACCTAAATAACATCTACGCTGGAGGCTTCAACA
tcacaaaacaacaacaaacaaccaATCAGAATCGATTTAACACTAATTCC
TTACCTCCCATTGGTTGTAATTTCAATAACAACACTCCTTCGTCGTTGGG
ATTTGTTCGAAAAcctcctcctcctccctcctccGTGGATCCTTTTGGAG
CGAACCGAGTGACACGTGatgatttgaatttcaaagataCATCACGTGAT
CTAGACTTGTTGAGTCAGACGATCCATAATGGCAGCCAAACTATTCAAAA
TGGTTGCAAAAGTAATGGGGTTCAAAGTTTTTATAGCAATGCGATTATAT
AAATGTCTTTCGCTTCGTGCTACAATGACACCAAATCTTTCTCAAGCTTG
GACCTGCTTTATGCTGTTTACAGgGCGCGTGGGCGTGGGGGAATGAACTT
GGGACCGGGCGGAATTTCCGCAAACTTTAACACTGACAACTCAACATATC
AAATCAACGCAAACAATACACGTAATCACAACATGGGCGGGAATGGGCGT
AAAGGCGCCATGAATATGAATGGAGGGCGCAGAATGGGCGTTAATAGGAT
GACAGTAGCAAACAGCAAAACAGGACACAGCGTACATATGAGAGGGCTTC
CGTTTGAATCTACAGCTGCTGATGTCATCAGGTTTTTCGCACCTTTACAG
CCAGTAGATATCCGATTGTTGTACGAGTCAAACACAGGTCGGCCAAAGGG
AGAGTGCGATGTCGATTTCACAACCCACCATGATGCAGAGGAGGCTATga
agaaagataaacaaaaTATGGGACACCGATACATTGAATTGTTCTTGAAA
TCCACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCATCGG
AAAAAGTTCTCCTCCGTTGCTTCTCTCCCATAACAACAACAATCGCTCCT
CCATCATTCAACAACCAAACCTAAATAACATCTACGCTGGAGGCTTCAAC
AtcacaaaacaacaacaaacaaccaATCAGAATCGATTTAACACTAATTC
CTTACCTCCCATTGGTTGTAATTTCAATAACAACACTCCTTCGTCGTTGG
GATTTGTTCGAAAAcctcctcctcctccctcctccGTGGATCCTTTTGGA
GCGAACCGAGTGACACGTGatgatttgaatttcaaagataCATCACGTGA
TCTAGACTTGTTGAGTCAGACGATCCATAATGGCAGCCAAACTATTCAAA
ATGGTTGCAAAAGTAATGGGGTTCAAAGTTTTTATAGCAATGCGATTATA
TAAATGTCTTTCGCTTCGTGCTACAATGACACCAAATCTTTCTCAAGCTT
GGACCTGCTTTATGCTGTTTACAGgGCGCGTGGGCGTGGGGGAATGAACT
TGGGACCGGGCGGAATTTCCGCAAACTTTAACACTGACAACTCAACATAT
CAAATCAACGCAAACAATACACGTAATCACAACATGGGCGGGAATGGGCG
TAAAGGCGCCATGAATATGAATGGAGGGCGCAGAATGGGCGTTAATAGGA
TGACAGTAGCAAACAGCAAAACAGGACACAGCGTACATATGAGAGGGCTT
CCGTTTGAATCTACAGCTGCTGATGTCATCAGGTTTTTCGCACCTTTACA
GCCAGTAGATATCCGATTGTTGTACGAGTCAAACACAGGTCGGCCAAAGG
GAGAGTGCGATGTCGATTTCACAACCCACCATGATGCAGAGGAGGCTATg
aagaaagataaacaaaaTATGGGACACCGATACATTGAATTGTTCTTGAA
ATCCACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCATCG
GAAAAAGTTCTCCTCCGTTGCTTCTCTCCCATAACAACAACAATCGCTCC
TCCATCATTCAACAACCAAACCTAAATAACATCTACGCTGGAGGCTTCAA
CAtcacaaaacaacaacaaacaaccaATCAGAATCGATTTAACACTAATT
CCTTACCTCCCATTGGTTGTAATTTCAATAACAACACTCCTTCGTCGTTG
GGATTTGTTCGAAAAcctcctcctcctccctcctccGTGGATCCTTTTGG
AGCGAACCGAGTGACACGTGatgatttgaatttcaaagataCATCACGTG
ATCTAGACTTGTTGAGTCAGACGATCCATAATGGCAGCCAAACTATTCAA
AATGGTTGCAAAAGTAATGGGGTTCAAAGTTTTTATAGCAATGCGATTAT
ATAAATGTCTTTCGCTTCGTGCTACAATGACACCAAATCTTTCTCAAGCT
TGGACCTGCTTTATGCTGTTTACAGgGCGCGTGGGCGTGGGGGAATGAAC
TTGGGACCGGGCGGAATTTCCGCAAACTTTAACACTGACAACTCAACATA
TCAAATCAACGCAAACAATACACGTAATCACAACATGGGCGGGAATGGGC
GTAAAGGCGCCATGAATATGAATGGAGGGCGCAGAATGGGCGTTAATAGG
ATGACAGTAGCAAACAGCAAAACAGGACACAGCGTACATATGAGAGGGCT
TCCGTTTGAATCTACAGCTGCTGATGTCATCAGGTTTTTCGCACCTTTAC
AGCCAGTAGATATCCGATTGTTGTACGAGTCAAACACAGGTCGGCCAAAG
GGAGAGTGCGATGTCGATTTCACAACCCACCATGATGCAGAGGAGGCTAT
gaagaaagataaacaaaaTATGGGACACCGATACATTGAATTGTTCTTGA
AATCCACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCATC
GGAAAAAGTTCTCCTCCGTTGCTTCTCTCCCATAACAACAACAATCGCTC
CTCCATCATTCAACAACCAAACCTAAATAACATCTACGCTGGAGGCTTCA
ACAtcacaaaacaacaacaaacaaccaATCAGAATCGATTTAACACTAAT
TCCTTACCTCCCATTGGTTGTAATTTCAATAACAACACTCCTTCGTCGTT
GGGATTTGTTCGAAAAcctcctcctcctccctcctccGTGGATCCTTTTG
GAGCGAACCGAGTGACACGTGatgatttgaatttcaaagataCATCACGT
GATCTAGACTTGTTGAGTCAGACGATCCATAATGGCAGCCAAACTATTCA
AAATGGTTGCAAAAGTAATGGGGTTCAAAGTTTTTATAGCAATGCGATTA
TATAAATGTCTTTCGCTTCGTGCTACAATGACACCAAATCTTTCTCAAGC
TTGGACCTGCTTTATGCTGTTTACAGgGCGCGTGGGCGTGGGGGAATGAA
CTTGGGACCGGGCGGAATTTCCGCAAACTTTAACACTGACAACTCAACAT
ATCAAATCAACGCAAACAATACACGTAATCACAACATGGGCGGGAATGGG
CGTAAAGGCGCCATGAATATGAATGGAGGGCGCAGAATGGGCGTTAATAG
GATGACAGTAGCAAACAGCAAAACAGGACACAGCGTACATATGAGAGGGC
TTCCGTTTGAATCTACAGCTGCTGATGTCATCAGGTTTTTCGCACCTTTA
CAGCCAGTAGATATCCGATTGTTGTACGAGTCAAACACAGGTCGGCCAAA
GGGAGAGTGCGATGTCGATTTCACAACCCACCATGATGCAGAGGAGGCTA
TgaagaaagataaacaaaaTATGGGACACCGATACATTGAATTGTTCTTG
AAATCCACAATCCATGGCAACGGGAAATGGAACAATAACAATAACATCAT
CGGAAAAAGTTCTCCTCCGTTGCTTCTCTCCCATAACAACAACAATCGCT
CCTCCATCATTCAACAACCAAACCTAAATAACATCTACGCTGGAGGCTTC
AACAtcacaaaacaacaacaaacaaccaATCAGAATCGATTTAACACTAA
TTCCTTACCTCCCATTGGTTGTAATTTCAATAACAACACTCCTTCGTCGT
TGGGATTTGTTCGAAAAcctcctcctcctccctcctccGTGGATCCTTTT
GGAGCGAACCGAGTGACACGTGatgatttgaatttcaaagataCATCACG
TGATCTAGACTTGTTGAGTCAGACGATCCATAATGGCAGCCAAACTATTC
AAAATGGTTGCAAAAGTAATGGGGTTCAAAGTTTTTATAGCAATGCGATT
ATATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15020MSTRG.15020Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15020.3.p1MSTRG.15020.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15020.3.p1.exon1MSTRG.15020.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.3.p1.exon2MSTRG.15020.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.3.p1.exon3MSTRG.15020.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.3.p1.exon4MSTRG.15020.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.3.p1.exon5MSTRG.15020.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.3.p1.exon6MSTRG.15020.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000129_pilongenomesc0000129_pilon:929320..934500 +