MSTRG.15020.2.p2 (mRNA) -

Overview
NameMSTRG.15020.2.p2
Unique NameMSTRG.15020.2.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000129_pilon:924279..934500+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.15020.2.p2 ID=MSTRG.15020.2.p2|Name=MSTRG.15020.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=10222bp|location=Sequence derived from alignment at sc0000129_pilon:924279..934500+ (Clytia hemisphaerica_ch_hm2_pilon)
AGATTAAGAGAAACACTTGTCATCTGGTGTGTTTGGTGGACTTAATTTGA ATAACTCATCATCGTCAAACATCACCACCACAGCTGTTGTGCAATTTGTT TGTTTGGGAGACACACTTCGCGGGTTTACAGGGAAAAAGGGACTAAACAC TAATCACGTGTTAATCAAAAGTCGAAGTTTTTggttttggtaaaatttgg ctCTTTTGAAAACTCGACGAGTGTTTATTCTTCATCTTCCTTGGCAAGCG AGTGAGAAGATTTTATCAAACCTCATCAGGTGGCAAGCAGAACGATCAAG CAATATTGTGGAATTTGGGAGCAAAAACGTTCATCCAgggataaaaaaac aaacggGGAAAAGAACACACAGGAATATAATGGCAACCGAAGAATTATGT TTAATTTGCTGGTAAGTTTTTATCACTGTTTTCTTCAGTTCCTTCAAAAA TCTTAGTTTGTCAAAATCATCtttttttGAGTTACCTGATTCCAGACACT TATCCTCAGAAGTCTTATTCTGTAATACCTGCAGTTTTGTAGAGGGCGGT GAAAATAGTCGACCTTCTGCCAAACTTTAGTTCACAGTTAGAAAAGGCAG GGCAGAAGACTGACTGTTTAAACTAGAGGTTTCATGTGCTTCTGAAAAGT TATAAAGAAAGTTACAAACTTGatttatacaaaaatctttgaaCACTTCA TTTGAACCCTCGAGTTTTAATGGCTAGACTGTCTAATTGACTTAATTGAC CTTTATTTACTTCCCATGTATCAATAAAGAAACTTTATTATTTACCATAC AGTTAGGTCCCAAATTTACTTAGAAAGTTAAAAGTCGGCGAAAAACCTTA TCCATTAATGTAGGAGGAAATCTACGAAAGtttttttGACTGGAGAGGAA AGCTATGTATCTAATTAATGAAGAAAGCAACTAAAGACTTTTGAACTTCA TTAAGAACTTGCGATTTGATGGCGCTAATTAATTAAGTAAGACACAAGGA ACGCGATAGAGAGAGATGTTATTGATTTTGAACTTGTTAAGCGGAAGCGC CAGaccacgctttttttataagaacaacctaaatttttgaagactttgga tgttcttaactttttgatttttaagcctcTAAAAACTTCTaaaatgctct tattttcatatttttagagtattttagttgcttttcctaagaaatttgga CTTTCAGATTCcgtaaagcctaaaaatgttcttaacttgttctcaatatt ttgaccaagagaacattatgttcttatatagtttgttcttattaaaaata cCTATATTATCTTACTTTTTCTCACGGAATTCACAAACATGTTCCAATAA CCTGTCTTTAAAAGTATCACTCGTCGTAATGTGCCGGTATCGAGGATTTT GAGGTTTAGCGAGAGTTGTAAAAGATTAAGTTAAGGAAGACTTAATTTTG TTGTGAGGTTGGGTCGAATGTATGTTATAATCATCAATACGTTAGTTAGT CGCTACAATTGCTGGTCTAAAGCTACCAGGAATTGATTCGTTGCATATGG CTTGCAGTGAGCTTTATTTGAGCTCTACTTGGGAGctatatttatcattt tctgCTAGACATCAGCATAGAAAGGAACTTATACTTATTGATACATGTTT CTACGTTTGCACATCATCTTTTTACtccactgagctttatataaacTCCG AAAGCAGTTTCTCGATTGCAGCCGACCAAagtctttgatcgaagttttct ttttgaaagggTATCCTAATGCCATTTGATATGGGTCAAATCATTTTCAA GGGAAATTGCAATGAACAATGAATTGACCTACATCGAGGAATGCTACCAT TAGGGAATCACCGTTCTCAAAACTTCGATCAAAAATGGCGGATATGGCTT AGTCCAAGATCTTTATAGAGGCCAGTGATCACAACATTGTCCAAACGTTC ACACAGTGTTGTTTGTATGTCCGTTAGATGTTAGAAGGATcgtgttttga aattttggtaataTTTTGCTGGATGCCAGCTTGGAAGTTTGTTTGTTACA AGTCTTCATAATGAGAATGTAATGATATAATGTCTGGACAATTAAACTGG TTCTTAGTTGACTAAAGAATATTGAATGATGAGCTTTGCTCACCAGCTAG GAAAGTCTCGCGTTGTTGAAGCTTCAGTTAGAATTGAGATGATTCGGTAG ACATCTAGTGTAGTTAGATATAGTTAGATATTTTGTGTAGATAGTCCAGT ATTCTAGGACTTtcagacagtctttcgattgtatTTACAGGATCAAATGA CCAGCCGATTCGGCTGaactatgaactgaacggaacattgaaAGGAGCGG AGATTCGAACAGCGAACTCCTGGTTTGAAGTGCCGGCGCCTTTAGACAAT TTGGCCATCGCTCCATAAACAGTTTAATCCAAAGTGTACCAAGACTTCAA CTACTTAATGAAGCTCGAATGTATATTCTCGAGCATAGGCGAAAGACAAT ACTCGTCTTGATTCTATCCGTCTGAGAAGTAGCAGTCTTTTCCTGATAAG ACAGAATGATCGATCAACTATCGATttaaaaagtcatttaatttaGTAAC AAGTTGTTCTTAATGTCAAAAGATCATAGGTTTAATCTTCTCATCAAAAA AGCGCTCAGCAAAATCATGCATCTTTCAACCAGAGGGAAAAGGTCTCCTC TCATCTCATCTCATCTTGGCAAACTTTAGCTGCTTTAGCTCACCAACTTT catgacaaaaaaatcttcaGTTGTTTTCCTATGTATTTCTTTTGAACTCA TTTATCATCccttaaaatatttctttgagaACCCCAGAAATTCAGAGATC TTCTTTACTGAATGagttgaaataaaatttctctaatttttggaGATCAG TTCTTTAGCCGATGGGAATGATAAAGCAACCGCAATAGAGTTGTCCGTAT TACCAGTTATTCTCGTAATTCCCGCGGGAGGGGGGACTCGGGTGAAATTG GGAACGGGAGGTGCCGCTGGTCAGCGTCCCTTTTTTAGCCTCTGAGGATA TCTGGCAGGGTccgaaataattaattttacatCCGTCTACATTTCGTCAT TTTTGCTATCAGTACCAATCATTTTTGCGGTTAGAAACGATCCCAAAGGA GGAGGGAGAAAGCCTCTGAGCTTTATATTATAAGCCCTGGAAACATTTTC TCAATTCCAGCCAattaaaatctttgatcagggtGTATTTGAAAGTGTAA CCCTAGCggtggcactactcaatagtggtCTGAATGCATCAAAAatgcgc tagatctactttcacTTGAACTTTTGTGTGTGAACATCAGTGCGTTGTTT AGCGTCAGTTTTTAACACTAAATTAGATTTTTAGCGGGTACCACATTAAT TAAAATCCGCTCAAAGCTGGTTTAGTCCAGGGTTTTTAGAAATCAGTGGA GAAAGCACATTATACACTCTTTCGTAGATACAGGAGTGGTAGAAACAAAT TTGACAGCTTCCCCTGAACGGCATTCTCTCGAGAAAGCTGTTTGTGAATT TTGGAAGGATAAGAAAAAGAAGCCAGACCATGCAACATGACTTTGAAACA TTAATTCCGATAAAAAAGTGTCCGGAAAAGTCTTTCGCACAAgcctttta tttcattttaaaatgtcCGAAATAATCTCcttgttcaatttttcacacac atgttgcaaaaaaaaaatcacaaaaaataaaCGAGGCAAATACGAGAGAT AAAGATCAGCTTAAGGTGTAAAGATGACGTCGGGTTATCGAGGTAAAGCC GGCTCAAAGTTTGTAAGCAGTCGTAAATCAGTTGATATCTCAGAGGCGCA tttttttAAGAtcattgtttcaaaaagtttaagtaAGCTTTATAAAGATA GCACTCTCTCTCTTGACTGTTGCAGAACGAAATAGATGTGAGATTCTTTC AAAAGGTCACACATTTAGAAGAGCGGacaaaatatgagaaaaagatGTCA TGTTTTAAAGTTCACGTTTTAGTAGAAGGGTTTATGGCTTGAAAGTTtac aaacaatattttttgtgaGTTGATGATATGAAGGCATCATCAgacgtttt tttctttcttgttttttctttgtatCTCGCTGTACTTTAGTGGATGAAGG ATGTGAATGAAATGAATTGATAGACTGACAAAGACTTGGAAGATTTGTCC AAACTAATAGTTAACGAACTCTTGTAGCCTCGTTTTGAAGAATCATCGTA GTCACGATTAACAATCCAATATAGATTTTCGAATAATTCAAAAGACAAAA TTAAGAAGACAAGCCAGCTTGGTTCGTCTCTAGAAGTATTCGGAGGTTTT CATTTGATTGTTGGACAAACTTTTGGATTGTTGATCTTGACTACGGTATG GTAGAAGTTACTTCATCTAATATAAAGTCTTTTGAGATTTAGATCAGATC TAGAACAGAGCAGCCAAGTATtctaatttcaatatttcaaaaatgaattt cagtTTGTATACTAACAGCTAACTGCAGTTAGCAGGAGCATTACTATAAA GGCTAGTTACTGGATGTGACGGTTTTATTACACAGCACTAGCTACATTGC TATAATTTTGAAGGCATCTAATTTTATATCGATATGTTTTTATAAGAGTA TCCGTTCTAATAGCTTTgttattcaaatattttgatcagattttcaagaa aatgattggattttaagagttttaaggagatttttaaacattaagtTGCG TCACATCTATATAATCAACATTTTACATGTCaaatttcctttctttttaa gactctgaaaaagtttgatttaaAGTCTTAAAGGCAATGCAGGTTAATTA TTAGAAGTCAAGCAGGTTTTTTAAACTGAGCGTTAAGAGTCAGAATTACT TTGGTGTGTTTGTTCAAtcaatcccagctggcacacaccgttgtttcaac gttcacctaacgttttatggacgttgtgaacgttagataaacgtcaaaaa aaaagcTGGAATGAAATTGATTTACGCTTCTTTCATGGGTTGGGAATGCG AGATAACATACCTGATGTCAAAGAATTTAtaatatgaaatttttattgGA AAATGACAGAAAAATAGCAATAAAAATAAACACATACCTTAGACAGAACA CCGACAAAGCATCTGCACATATCCATGGCTGAAACATAAAATACACATTA CACGATATATTAAAACATACAAAATGTCTTTCGCTTCGTGCTACAATGAC ACCAAATCTTTCTCAAGCTTGGACCTGCTTTATGCTGTTTACAGGTAAAT AGAGCGGTACCAAGAATAACTAGCAGGTCAATGATTGCGGGATAACAGTT TGAAATGAGCTCAATATCCCTTAACGAGAAACTAGCGAGTtcatctacac gtttttttataagaacaagctatataagaacataaggcttcaatagccaa aatgttaagaacaagttaagaacattttaaggcttcgcggactcgcCCAA TTTCTTAGGACTATACtcaaaaaataacgaaaataagaacccaaaaatga cgaaaacaagaacatgttaagaacactttaaggctaaaagctcaaaaagt taagaacatctgaaggcttcaaataatttggatgttcttataaaaaacgt gtatcacgTATAGGGGAGAGATAGATAGCTTTTCATTCGCTTATatccta aaaaaaatttccacccaggacattcttattcccccccccccccccccccc ccgcttattaatttttgggaaaatatttttgaaagttccctcttttgtcc taattctgctttattagcctccttttcagaaattttccacccaggacatt tttattccaaccccctccccccccgcttattccaaaccccacggctatta ggtacccgagagtacataAACTCGCTGCTCTATCGGGGGAGTATAGAAAT TGttaatttttgttaatttattcatattttcttttcattttaggGCGCGT GGGCGTGGGGGAATGAACTTGGGACCGGGCGGAATTTCCGCAAACTTTAA CACTGACAACTCAACATATCAAATCAACGCAAACAATACACGTAATCACA ACATGGGCGGGAATGGGCGTAAAGGCGCCATGAATATGAATGGAGGGCGC AGAATGGGCGTTAATAGGATGACAGTAGCAAACAGCAAAACAGGACACAG CGTACATATGAGAGGTaaacaagttaaaaatttaagccgttttttcaaac agtgaagttttgaaaaaaatcattattttgagTGCAGCGACggtctcgtt ttgaaaccattatcAAGGTGATCAACTCCTTGAGACTTCAAGTGTTACTT TAATAAATTGGAACAAACTTCCTATGAACTCCTCtcggaatcaattacca tagcaatattttggtaaggtaaggtaagcgttgctcgtgactTAATTCAT CAAAAAGTCTATCAATTTTTTACTAAGAACCTGTTtaacaatttttgctc aaaagcATGGGCCAAGACCATGATAAATTTAGCTTACCTAAGTATAACtt acatttatttttattccGTAGGGCTTCCGTTTGAATCTACAGCTGCTGAT GTCATCAGGTTTTTCGCACCTTTACAGCCAGTAGATATCCGATTGTTGTA CGAGTCAAACACAGGTACTTGATTGTTTCTGGCTTGCTTTAGATCTggta aaaagaataaaaaatttgaccaacttttgattttgacataAATGGAAGAA ATAGGTACAAGGGGATAAAATGGTTGCCGGGTATCTGTGAACCTGTCTGT CCAAGAGTTTCAAACAACACATCAAGTTGGTCTTTCTGGGGTCTTGTTGG GCTGGCAGCATCCCTCTGGTTTGTTGTGACAAAAACTATTTTGGGGATGC GCATTTCAAGGTCCAGCCCATATACCCGACATTCCCCACCCCAAGAAAAT AGAGTCAAAGAGTAGATGTCTTGTGCATTAAGTGGCATATCATTGTGAGA TCAAAGAATACATATTAtcatacaaagtaaaaaaataagcaaaaaatatg gaattgtagtttatacaaactgataccgtaacaattatcgtattatcatt tAACACCCCCATCACTGTATTGGGCTATTCTAGAAATAGGCTGCACccct acccagctggcacacaatgttgtttcaacgttcacctaacgttatatgga cgttatgaacattagataaacgttgaaaaaacgttgtgtgccagctgggt atgtTGAGGAGGTGAGACGttcagggtggtctggaaaataaaaaatccag gatGGTCAGTATAAcaaggtcgaaaatccagggtggtctaaagaaatggg agaaaaaaatccaagggggtcctgaaagattggaaaaaaatccagggggg tcaacaaatttttttctggaacagcCCATTATAAGGTTTacaaacgactc cagtctacttaAGGCTGAATATAATATAAtaccttttttgaaaactctCG TCCATTTTGTGATGTTTAGGTCGGCCAAAGGGAGAGTGCGATGTCGATTT CACAACCCACCATGATGCAGAGGAGGCTATgaagaaagataaacaaaaTA TGGGTAAGTGTGTAATTTACTGACCAGAATGGAAGGCGAAATGAAATTTA GAGACCAGAAATCAGCTCATGATGATCTGATACTTGATGCTAGCTAATGA TCCTCAAAAGAAACTgtatgtacacgctttttttgtaagaatggtgtaaa tccattgcATCGTGGATATTCTTAATCTTAActcttttgggaaaatcatc atATAATAGTGTTAACATGATGGcaatattcttacgatattcttaatttt ttggctattttcatcatggacattcttataaagtgtatttttataaaaaa agcgtgtagtacaATAACTGTAAATTCAATTGAAGACAAATTATTAAAAG CACCGTTTACAACTTCTGGAATTcttgattgaaatttttgttgcttATGA AAACCAAACTAAAGCGTCTCGTAATGCAGTTTTCACAAGGTTAAATTAAT GACCAgttttaaattatgaaaaacaatgTCGAAAGAAGTCCTTCTGAGGT TATATTAACATCTGccagtagcgagtttatgtttttttttgcaattttga ggacggcggagtgactgaagcgattttgaAAATCTAACTGTTCTGACCCG CAGAATTTTAAGGACAGGAAAaggtgctgatttaccgtcgtcctcagttg gtcaggatCTAAACAAATCAGAAGTTAACTATCTCCACCGTAGAAAAGCA AAGATATAAACCTAGCTAATTTGTAGCGACACGACTGAAATCGTAgacta tttttcttttgatctcttttctccaggacgtaaactatttttcttttgat ctcttttctcCAGGACACCGATACATTGAATTGTTCTTGAAATCCACAAT CCATGGCAACGGGAAATGGAACAATAACAATAACATCATCGGAAAAAGTA ATTAGTATTCCACTTGAAATTTCTTTCCAACATATTTTCATTGAATGAAC ACGTGGAGAAAATCAGTACACGAGGCCATTTTCGagtaaattttggtcca ttcaGATTCCAAAGACTCCCCGTTTTTTACTCACGATAATAATAAAAGTA AGAATTAGGTAACTTTCGCACACTATATTACGACTGCTTGCGGGACGTGA ATGCCTTGAAAATAATGCACCccttttgaaacaaaaacttGAAGGAAAGC AATCCAAGCTTTTGATATTCAAACAGGACAGGACAAGAATGGGCTTAAAG TGTAGAATGATCTTTAGAGGGGAATTTTTACAAGAGATGTAACATAACAT GGCTCAGTTCATTCAAAAAAGGACAGTTAGCTAAGTTCGGactcttttat cattttcagatTAAAAATTCTTTAGGTTCTCCTCCGTTGCTTCTCTCCCA TAACAACAACAATCGCTCCTCCATCATTCAACAACCAAACCTAAATAACA TCTACGCTGGAGGCTTCAACAtcacaaaacaacaacaaacaaccaATCAG AATCGATTTAACACTAATTCCTTACCTCCCATTGGTTGTAATTTCAATAA CAACACTCCTTCGTCGTTGGGATTTGTTCGAAAAcctcctcctcctccct cctccGTGGATCCTTTTGGAGCGAACCGAGTGACACGTGatgatttgaat ttcaaagataCATCACGTGATCTAGACTTGTTGAGTCAGACGATCCATAA TGGCAGCCAAACTATTCAAAATGGTTGCAAAAGTAATGGGGTTCAAAGTT TTTATAGCAATGCGATTATATAATAGGGTGTGACTTgattttgaattcaa ttttttgattatgGTCAGAAGAattttgtgtatattttattaaacgtgtg aattttctgtttgtttatttaattttttatgcatttgaaattattatttt ttaaatgatgaaaaagaatatttgggatttttttattaggctttcatgat tatttttttgtggttttttttggagaaataattttgggagtgtatataaa gtatattttaatttttgttcagtttttgaattcttttgagGGATAAATAG GAGATCAAACTAAAGAAGGACTTGTGAACAAAAGCCAGTAggagcaattt ttGtttgaatacctTTGTTCTTGGTAAGTGTTAGCTAAGCCTCGATTGCT AACCTTAATTTTGTTTGACttgcttaaaggttttgtttttAtataagagt gatatcgtttgcttactcgtcaattttAatttataagcttttttgcATtg aatttacacggatgtggagcaagattggtcaGaaagaggGAAAGAAaaac attttttgcttatatcagcacaatataataATAGATAGTGTCTGCCTAAT ATGaaactgatatgaaacatgtgtctgatatgaaacggggacacttatgt aaaaataaaacctttaagagttCTAGAAATGGCTTTAAGATGTTCTAGAC AATAGTTTGGTCAAACTGAAAACGTTGAAtgaaatttactttttattttt ggatgAAGGACACTTTTTATCACAAAAGGAATAGGCCTTTGATAAGAATA TCTTCAGAACAGATTGTACATAGGAATTTTATAGGTATTACATAGCATGG TTtagagatgaaaagaaaaatagtattgaaaatgaaaacaattttctttc tcaaacCTTCTTTATCAATACC

Coding sequence (CDS) from alignment at sc0000129_pilon:924279..934500+

>MSTRG.15020.2.p2 ID=MSTRG.15020.2.p2|Name=MSTRG.15020.2.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000129_pilon:924279..934500+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAACGGGAAATGGAACAATAACAATAACATCATCGGAAAAAatTAA
AAATTCTTTAGGTTCTCCTCCGTTGCTTCTCTCCCATAACAACAACAATC
GCTCCTCCATCATTCAACAACCAAACCTAAATAACATCTACGCTGGAGGC
TTCAACAtcacaaaacaacaacaaacaaccaATCAGAATCGATTTAACAC
TAATTCCTTACCTCCCATTGGTTGTAATTTCAATAACAACACTCCTTCGT
CGTTGGGATTTGTTCGAAAAcctcctcctcctccctcctccGTGGATCCT
TTTGGAGCGAACCGAGTGACACGTGatgatttgaatttcaaagataCATC
ACGTGATCTAGACTTGTTGAGTCAGACGATCCATAATGGCAGCCAAACTA
TTCAAAATGGTTGCAAAAGTAATGGGGTTCAAAGTTTTTATAGCAATGCG
ATTATATAAATGGCAACGGGAAATGGAACAATAACAATAACATCATCGGA
AAAAatTAAAAATTCTTTAGGTTCTCCTCCGTTGCTTCTCTCCCATAACA
ACAACAATCGCTCCTCCATCATTCAACAACCAAACCTAAATAACATCTAC
GCTGGAGGCTTCAACAtcacaaaacaacaacaaacaaccaATCAGAATCG
ATTTAACACTAATTCCTTACCTCCCATTGGTTGTAATTTCAATAACAACA
CTCCTTCGTCGTTGGGATTTGTTCGAAAAcctcctcctcctccctcctcc
GTGGATCCTTTTGGAGCGAACCGAGTGACACGTGatgatttgaatttcaa
agataCATCACGTGATCTAGACTTGTTGAGTCAGACGATCCATAATGGCA
GCCAAACTATTCAAAATGGTTGCAAAAGTAATGGGGTTCAAAGTTTTTAT
AGCAATGCGATTATATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.15020MSTRG.15020Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15020.2.p2MSTRG.15020.2.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.15020.2.p2.exon1MSTRG.15020.2.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.2.p2.exon2MSTRG.15020.2.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.2.p2.exon3MSTRG.15020.2.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.2.p2.exon4MSTRG.15020.2.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.2.p2.exon5MSTRG.15020.2.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.15020.2.p2.exon6MSTRG.15020.2.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000129_pilongenomesc0000129_pilon:924279..934500 +