MSTRG.1501.1.p1 (mRNA) -

Overview
NameMSTRG.1501.1.p1
Unique NameMSTRG.1501.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000007_pilon:965563..969396-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1501.1.p1 ID=MSTRG.1501.1.p1|Name=MSTRG.1501.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3834bp|location=Sequence derived from alignment at sc0000007_pilon:965563..969396- (Clytia hemisphaerica_ch_hm2_pilon)
GCTTCTTCGCATCTTCTGCTATAAATTGGAATGATTATCAAATTATTTAT
CGAATAAACAACTTTTATTTATCAAGTAAACAACTAGAGGAAGATTCACA
AAAACAAGAAAGAAAGTTCCATCCAAGGTGAGGTAGGATTCTTTGTAGAA
ATATAAATTGAGAATTTATAGGGATACGTAATATTTCTATGTTGTAGTCT
ATGCTCGCTTACCCGAGCTACACTAATGAGTCTTGGGTAGAAACAGAACA
ATAGAACGCGTGTTTGCGGATAGATACGTAAATATGACGTATGAGTATCT
TTTAACCTACTGGTACTTTAGCTGATTATTTTTTACTCTTTTCGATAATT
TCTTTTTCTCTTTGGTTGGTGAAATCTCAATTTCTTTCTTTTTCATAGGA
AGCCTACCAAGTGAAAGGTTTGGCAAAGATGGATAATCATATTATCCTAT
TATCGTTTTTGATACTATGCTGTTACGCTTGTTATGGCAACACACAATAC
ATTGCCAAACATGATATGACATCATCGAGTTACCAGCAAGAGTTCAGCAA
ATTGCACCATAAAGGATATCGGTTGAAGCAAGTCAGTGGTTACTCTACAT
CACAAGGGTACCCAAGGTATGCCGCCATCTGGGTGAAAAATAGCCGCCCC
AACATCGCATACAAGGCGAAACATGGAATGAGCAGCAAGGATTACCAGGA
AGAGTTTCAAAAGAACCGTCTTCTCTATCGTCTGGTCATGATCGAAGGCT
ATCTTGTGAAAAAAGACAACAAATGGGAAGCTCACTATGCAGCTATTTGG
CACAAGAAAACATCGCTAGGAGCAAACCAACCAGCTTACAAAACACACCA
TAAAATGTCATCAAGGACTTACCAGACCCTATTCAACAAATACAAAATGC
AAGGCTATCGATTGACTTGGGTTAGTGCGTATACTATTGGCAAGAAAAGC
GACTACTATGCAGCAATATGGGAAAAGAGATCAGGCCCTACCATGATCAC
TCGCCATCGAATGACCAGTTCTCAATACCAATCTTACTTCAACATATACA
CTCGTAGAGGATATCATTTGACACTGGTGGATGGGTATCAGTTGGATGGA
AGTGCGAGATATGTTGCCATATGGGAACGGATAGGTGGCGCAAGATCTGC
TCGCCATGGTTTGATAGAGCCCAACTATCAAGCAGCTTTCGATAACCAGA
AGTACCGTGGTTATAACCTCAATATTGTCTCTGGATATTTAGTAGGATCG
ACCAAACGATACGCTGGTATTTGGATCAACAGTGGAATCTGGACCACTCA
AAACCTTAATCATATTGATAGCACAGTGAAAGATTTCCTCAAAGAAAACC
AAATTCCTGGAGGTTCTTTAGCCATTACACGGCATGGAAAACTGGTCTTT
GCTCAAGGCTACGGAAATGTGAATACTGGTTTAGATGCTTCACCAAGTCA
CCTTTGGAGGATTGCCAGTATTTCAAAACCAATCACTGGCGTGGCCATCA
TGAAGCTGATTGAAGACGGTAAGTACCTAGATTTCTTCAGAATGACAAAT
TGTTCGTCATTTGTTTACACCCTTTAAAGTAAGGTTCGAACTAGAGGTTA
TGCTGTAAAATGAGAACGATATGAATAGAAACGATATGAAAAGGAATTTG
ATGAAGACATAAGTATCTTGTTTGCACCATGCTTACGGTATAAAACAAAG
TTCATAACGTCATTTTTGCAATTAAATTCTCAATTACTTTTTAAGGAATT
TGATTAAAAAGCAATTTGTAAAGGCAATTCTTTGTTAAAAGTGTAAAGGA
ACCTGAAACGTAACTTTCATGCTCAAATACCAAAATCAATTTTTTTACTA
TGGTTAGAGCCACTGTCAGCCGAGAAATTGTCAGCCACGATTAGAGATGA
AACGCCCCTATGGGCGCATGGGTCGTGGTGCTCCTATGTCCTTATTTGCT
GTATACAGTCAAAAATGAGCGTGACATAACGTACGACGAGTACGTCCTCA
GGAATGGCCGAATATCTGCTTATTCACTCAACTCTAATAAACTCTCTTTT
TTCCAACAGGTCAAATCAAGTTGAGTGACAGAGTATTTGGTCCAAACGGC
ATCCTTGGAAATGAATACAACAATGGAGAGTATAGCGCTAGAGAGCTCTT
CATCACCGTGCTTCATTTACTGGAGCATACAGCAGGAGGGACCACGTGGA
ATAACAAAGGCGGTGATGGAAGCTCTGATCCAATGTTTCAACATACCACC
TTCTCTCACAAACAGCTCATTGATTGGGTGCTCAAGACTCGTGAACCGAG
TCACTGGCCTGGTTCAATCTACAGTTATTCCAATTTTGGTTATTGCATCT
TAGGACGTATCATTGAAAAAGTAACCGGTGTCACGTACAGCAAATACGTC
CGAACGAAGATCATGGAGCCCGCCAAAGCGGAAAACATGTACATCGCTGG
AAACACGTACGCCCAAAAAAGACCGATGGAAACACGGTATTATTCGGGTG
ACGGCAATCCGTACACTATGAACGTGCACCGAATGGATTCACACGGCGGA
TGGATTACAAACCCGATCGACCTTCAGCGGTTCATGGTCCACTATGACAG
TTTGTCAACGGTTGATGACTTGCTCAAGGAAAACACCATTCTGAACATGG
TTAAACCGTCAGTTCGAAATGCAGGCAAATGCAAAGGTGGATGGTCCATC
AATGCATTGAGAGATTGGTGGTGGCACGGAGGCTCCTTACCTGGCACCAT
GACTGTTCTGGTGAGATTGGATGAGGTTCGTGGGTTGACTTGGTCCTTCT
TTGTCAACAAAAGGGGGAGCGGTGAAGTGGATCCATTGATGTGGAAAGTT
GTCAATGGAATCACTGCTTGGCCAAGTGCTGGTGTTGACTTATTTTAAAA
TATCAGATTTTGAGTGTATGCAAACATTAAAACAGGCGATTTAAAGTGAG
GCTAAATACTGTAGATACCTCAAATATACCGTACATTTACAAGTTGCTCA
AATCTATACTTGTCACAAGGACTTTCACTGTAAATCTCTTCATGGTAAGG
GGACATCTGTATCTGTAATTTTTAGTATTTCTTTATTCATTCAATAATTT
TGATTCTATTATGCCAACTAAGTTTATCTCAAGGCTAGCGTTGTCAGCGT
CAAAACAAAAGACTGGTAGCAATAGTGTTAAAAAGTCGCTTTTATTTTTA
ACCTTCCATTATATCTCTGGATAGGATGATCTCTAACTGCACTTCATTGG
CGAGAATACACCAACATCCACTGAGTTCTAGGAATCATGTGTTACCAATT
GTGAACTAATCTTTACAAGCAGATGGTATGTACCTTGTACACGCGAAAAT
TTTTCCACTTAAGGTACGATGCGTTTGTAGAAGAATAAAAGATGCATTTT
TTGGGGGTTATTTTATTATTTATAGGTATATAAAAAACTTGTATGAAAAT
ATATAAAAAATCCAGGCTGAGAAATTATTTACAAATGTATACGTATTGGA
GATGACGTCACTACCAGAGTCACTAATCATCGTTGGTGACAATGCTGTAA
ACCTTTATGAGAAGAAACCATATTCCGATACAAAAGGTGACGAGGGAGGT
GTCGTATGCGCACCATGGTCTTTCGGTGTCGCATTGGTCGAAAATAATAC
CCATTGATGTCTTTTCTTGTCTTTTTAGTTTACCAGTGCTATAAAGGGTA
TAAATAAAAGAAATGTTTTTTACAAAATGAATCGTTACCGTAGATGTTTC
TACTTACTTGTTATCAAACGAACAATTACGCGCTTTTTTTTTATAAGAAT
GGTGTTTTTTCATTTCATCATGGATATTCTTAAC

Coding sequence (CDS) from alignment at sc0000007_pilon:965563..969396-

>MSTRG.1501.1.p1 ID=MSTRG.1501.1.p1|Name=MSTRG.1501.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3858bp|location=Sequence derived from alignment at sc0000007_pilon:965563..969396- (Clytia hemisphaerica_ch_hm2_pilon)
GTCAAATCAAGTTGAGTGACAGAGTATTTGGTCCAAACGGCATCCTTGGA
AATGAATACAACAATGGAGAGTATAGCGCTAGAGAGCTCTTCATCACCGT
GCTTCATTTACTGGAGCATACAGCAGGAGGGACCACGTGGAATAACAAAG
GCGGTGATGGAAGCTCTGATCCAATGTTTCAACATACCACCTTCTCTCAC
AAACAGCTCATTGATTGGGTGCTCAAGACTCGTGAACCGAGTCACTGGCC
TGGTTCAATCTACAGTTATTCCAATTTTGGTTATTGCATCTTAGGACGTA
TCATTGAAAAAGTAACCGGTGTCACGTACAGCAAATACGTCCGAACGAAG
ATCATGGAGCCCGCCAAAGCGGAAAACATGTACATCGCTGGAAACACGTA
CGCCCAAAAAAGACCGATGGAAACACGGTATTATTCGGGTGACGGCAATC
CGTACACTATGAACGTGCACCGAATGGATTCACACGGCGGATGGATTACA
AACCCGATCGACCTTCAGCGGTTCATGGTCCACTATGACAGTTTGTCAAC
GGTTGATGACTTGCTCAAGGAAAACACCATTCTGAACATGGTTAAACCGT
CAGTTCGAAATGCAGGCAAATGCAAAGGTGGATGGTCCATCAATGCATTG
AGAGATTGGTGGTGGCACGGAGGCTCCTTACCTGGCACCATGACTGTTCT
GGTGAGATTGGATGAGGTTCGTGGGTTGACTTGGTCCTTCTTTGTCAACA
AAAGGGGGAGCGGTGAAGTGGATCCATTGATGTGGAAAGTTGTCAATGGA
ATCACTGCTTGGCCAAGTGCTGGTGTTGACTTATTTTAAATGGATAATCA
TATTATCCTATTATCGTTTTTGATACTATGCTGTTACGCTTGTTATGGCA
ACACACAATACATTGCCAAACATGATATGACATCATCGAGTTACCAGCAA
GAGTTCAGCAAATTGCACCATAAAGGATATCGGTTGAAGCAAGTCAGTGG
TTACTCTACATCACAAGGGTACCCAAGGTATGCCGCCATCTGGGTGAAAA
ATAGCCGCCCCAACATCGCATACAAGGCGAAACATGGAATGAGCAGCAAG
GATTACCAGGAAGAGTTTCAAAAGAACCGTCTTCTCTATCGTCTGGTCAT
GATCGAAGGCTATCTTGTGAAAAAAGACAACAAATGGGAAGCTCACTATG
CAGCTATTTGGCACAAGAAAACATCGCTAGGAGCAAACCAACCAGCTTAC
AAAACACACCATAAAATGTCATCAAGGACTTACCAGACCCTATTCAACAA
ATACAAAATGCAAGGCTATCGATTGACTTGGGTTAGTGCGTATACTATTG
GCAAGAAAAGCGACTACTATGCAGCAATATGGGAAAAGAGATCAGGCCCT
ACCATGATCACTCGCCATCGAATGACCAGTTCTCAATACCAATCTTACTT
CAACATATACACTCGTAGAGGATATCATTTGACACTGGTGGATGGGTATC
AGTTGGATGGAAGTGCGAGATATGTTGCCATATGGGAACGGATAGGTGGC
GCAAGATCTGCTCGCCATGGTTTGATAGAGCCCAACTATCAAGCAGCTTT
CGATAACCAGAAGTACCGTGGTTATAACCTCAATATTGTCTCTGGATATT
TAGTAGGATCGACCAAACGATACGCTGGTATTTGGATCAACAGTGGAATC
TGGACCACTCAAAACCTTAATCATATTGATAGCACAGTGAAAGATTTCCT
CAAAGAAAACCAAATTCCTGGAGGTTCTTTAGCCATTACACGGCATGGAA
AACTGGTCTTTGCTCAAGGCTACGGAAATGTGAATACTGGTTTAGATGCT
TCACCAAGTCACCTTTGGAGGATTGCCAGTATTTCAAAACCAATCACTGG
CGTGGCCATCATGAAGCTGATTGAAGACGGTCAAATCAAGTTGAGTGACA
GAGTATTTGGTCCAAACGGCATCCTTGGAAATGAATACAACAATGGAGAG
TATAGCGCTAGAGAGCTCTTCATCACCGTGCTTCATTTACTGGAGCATAC
AGCAGGAGGGACCACGTGGAATAACAAAGGCGGTGATGGAAGCTCTGATC
CAATGTTTCAACATACCACCTTCTCTCACAAACAGCTCATTGATTGGGTG
CTCAAGACTCGTGAACCGAGTCACTGGCCTGGTTCAATCTACAGTTATTC
CAATTTTGGTTATTGCATCTTAGGACGTATCATTGAAAAAGTAACCGGTG
TCACGTACAGCAAATACGTCCGAACGAAGATCATGGAGCCCGCCAAAGCG
GAAAACATGTACATCGCTGGAAACACGTACGCCCAAAAAAGACCGATGGA
AACACGGTATTATTCGGGTGACGGCAATCCGTACACTATGAACGTGCACC
GAATGGATTCACACGGCGGATGGATTACAAACCCGATCGACCTTCAGCGG
TTCATGGTCCACTATGACAGTTTGTCAACGGTTGATGACTTGCTCAAGGA
AAACACCATTCTGAACATGGTTAAACCGTCAGTTCGAAATGCAGGCAAAT
GCAAAGGTGGATGGTCCATCAATGCATTGAGAGATTGGTGGTGGCACGGA
GGCTCCTTACCTGGCACCATGACTGTTCTGGTGAGATTGGATGAGGTTCG
TGGGTTGACTTGGTCCTTCTTTGTCAACAAAAGGGGGAGCGGTGAAGTGG
ATCCATTGATGTGGAAAGTTGTCAATGGAATCACTGCTTGGCCAAGTGCT
GGTGTTGACTTATTTTAAATGGATAATCATATTATCCTATTATCGTTTTT
GATACTATGCTGTTACGCTTGTTATGGCAACACACAATACATTGCCAAAC
ATGATATGACATCATCGAGTTACCAGCAAGAGTTCAGCAAATTGCACCAT
AAAGGATATCGGTTGAAGCAAGTCAGTGGTTACTCTACATCACAAGGGTA
CCCAAGGTATGCCGCCATCTGGGTGAAAAATAGCCGCCCCAACATCGCAT
ACAAGGCGAAACATGGAATGAGCAGCAAGGATTACCAGGAAGAGTTTCAA
AAGAACCGTCTTCTCTATCGTCTGGTCATGATCGAAGGCTATCTTGTGAA
AAAAGACAACAAATGGGAAGCTCACTATGCAGCTATTTGGCACAAGAAAA
CATCGCTAGGAGCAAACCAACCAGCTTACAAAACACACCATAAAATGTCA
TCAAGGACTTACCAGACCCTATTCAACAAATACAAAATGCAAGGCTATCG
ATTGACTTGGGTTAGTGCGTATACTATTGGCAAGAAAAGCGACTACTATG
CAGCAATATGGGAAAAGAGATCAGGCCCTACCATGATCACTCGCCATCGA
ATGACCAGTTCTCAATACCAATCTTACTTCAACATATACACTCGTAGAGG
ATATCATTTGACACTGGTGGATGGGTATCAGTTGGATGGAAGTGCGAGAT
ATGTTGCCATATGGGAACGGATAGGTGGCGCAAGATCTGCTCGCCATGGT
TTGATAGAGCCCAACTATCAAGCAGCTTTCGATAACCAGAAGTACCGTGG
TTATAACCTCAATATTGTCTCTGGATATTTAGTAGGATCGACCAAACGAT
ACGCTGGTATTTGGATCAACAGTGGAATCTGGACCACTCAAAACCTTAAT
CATATTGATAGCACAGTGAAAGATTTCCTCAAAGAAAACCAAATTCCTGG
AGGTTCTTTAGCCATTACACGGCATGGAAAACTGGTCTTTGCTCAAGGCT
ACGGAAATGTGAATACTGGTTTAGATGCTTCACCAAGTCACCTTTGGAGG
ATTGCCAGTATTTCAAAACCAATCACTGGCGTGGCCATCATGAAGCTGAT
TGAAGACG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1501MSTRG.1501Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1501.1.p1MSTRG.1501.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1501.1.p1.exon3MSTRG.1501.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1501.1.p1.exon2MSTRG.1501.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1501.1.p1.exon1MSTRG.1501.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007_pilongenomesc0000007_pilon:965563..969396 -