MSTRG.1500.3.p1 (mRNA) -

Overview
NameMSTRG.1500.3.p1
Unique NameMSTRG.1500.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000007_pilon:948140..952005-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1500.3.p1 ID=MSTRG.1500.3.p1|Name=MSTRG.1500.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3866bp|location=Sequence derived from alignment at sc0000007_pilon:948140..952005- (Clytia hemisphaerica_ch_hm2_pilon)
TCGTCTTCGAACTAATCACTAATTGTTTGTTTTTCACCTTAAAATAATGT
ACTCATCGAGAGGCTACAAGTAATTTTTTTTCAGACTGCTTCAAAATCTT
TAAGGTTTTAATATCGTTGAATTTTAATTTGAAGTTAATCACAGATGCTG
GAATCAGCAGATCTCAATTCGTTTAGAGCTTTCTTAATATACATAAGTTA
ATTTACATAAATAAATAAACTGGACTATTACAATACGCATGGTCAAACTT
TTTCGATAAAGATTTTTAAAATGAGTTACAATTTTTAGAAAAGCAATACA
AACCAATCGAGATGGAGGTCATTCGAAAGAAGTTAGGAGGAATGAAAAAG
AAATTGGTTGAAGCAGAAACCGAAGCTCGAGGAATGGAAAAGGAATTAGA
ACAAGTCAACACAAAAGCCGAAAGTGTAAGTTCTGAGTATCAAATTTCAC
CCTAACCCTCAAGCCAATGTCGGGTATACCAGACATGAGCTATATAGGAG
GGCGAACATCCAGTTTGAGTAAGAAATCGTCATTTTTGATCGAATTGGAT
TGGGCTTCATGGTCAAGCAAAAAAAAAATCAAAAGTGAGTCTTTCAAGCG
AGACTTTAAGCCAAAAAGTCAAAAATTTGACAAAAATCCACTTTTTAAAG
ATCTTGACCATTTTTGACCATTTTTGATCAACGAATGATCCAAGAACCTC
CAAATTTTACCCGATTCTGTCTCTAGCGAATTAATTTGAAATTTTACTAC
CGGGCACCTTTCCATCATTCAGTCAGTTCCGCACAGTGAATCGGACGGCA
CCGAAGGCACCTAAAAGAAAGAAGAGACTCTGAGCTATTCAACGGACTGT
GAACGAGCTTCTAACTCCTTCTAGATCTGGAGATATAAACCTTTAAAGTT
TGAACTAGCGATTTTCTTTAAAAAACTTAGAAAAAATGACCGTGACACTT
ATAGGGTTAATATAAACGTTCTTTTCGTCAAAACATGATTTATATTAGAA
TCTGGAAAGTAATAAGAAAAGTAAAGCACTCCCGCTTAACAAAACGCTAT
ACAAAGAATTTAGGCCAATTTAGAATAATTAAAATACTATTCCTATTCCT
GATAAACTATTTTAATGTTTAACAATTTCATTGTTCACTGTTCTTGTAGA
CGGAAAAGAAAGTGAAACTGATTCAAGAAAAAGTCGGAGATTTGGAAGAG
AAATTGGACGAAATGGAACGACGACATGACGAAACGTCCACTAAACTGGC
GGACGCCGAGAAAAAGGGCGACGAGGTAAAACGAATGCACAATGAGCTCA
GTGCACGCGCTGGAACGACCGCTACCAAATTGGAACAACTGGAAACAGAA
TTGAGCGAATATCAAGCCAGAGAAAAAGATGTCACTGAGCTATATACCAA
GGTAGAGAAAAATCAAGTTAATGTTATAGACCCTTTACTAACTGAAATGA
GATCTTAAATTATAATTAGGGACAGTGAAAATGTTGAAACTACTAAAGGC
GCTACTAAACTGATACATCCTGTGGGGAGAAAGCAAATTAAACAACTTTA
CATTTCTTTTGCATATTCAAGTTGGCACCAGAGTTGACAGAAATGGAGGA
AAATTTGGAAGAGGAAGAAGAAAGATGTAACGTGGCTGATGAGTAAGTGC
TCTCATGTTCGGGGCTGGTTTTTAGCTCTATAACTACAAAAATGTCTCCT
GGACTCGGTGGGACCCCCTTCCCACTGAAAAATTTGTTAAACTTTGTTCC
CAGTGGGTAAATACTCTTTACAACTTTATAACATTGAAGTAACAAAAAAT
CCTACAGCAAGAATATCTGGCTACAATCCAAAACCATCAAATGAAATTCC
TCATTCAATCAAAGATTGATAATGTTTGGTCAAAATGACTGAGTCAGCTA
TCCGGCTGTGAATACGGAAACTGCAAATAACTGGATACACTTTTCTTCAT
CGAACTTGACTTTTCCGGGGTGGATAGCGTTCATTTGACTGACCCGGAAG
AAGACCAGCGAGGATAGGAAAGAAGTTGGTTTCCCTTTTTTGTTAAGCTT
TGAATTTCATCCACTCCATAATTTGGTTTTCCGGCCCGGGACCTGACGTC
CCTGAAAAGTCAACATTTTGTCCTTAACTTTCAGTCGCGTCAAAACGTTG
GAAGAAAAATTCATTCAACTTGGTAATAATTTGAGAAGCATGGAACGATA
TGAAATAAAATCGAACGAACGAGGAACAGAAATCCAACTAAAAATCACTG
AATTGCAAAACAAGGTGGAAGAGGTATGATGAACAAGCCTCTAGTCTGCT
AACCATTGAATAGAAAGACAAACATTCTCCATGGTTTTGTCTAGCTGTAG
TCATATCAATGAAGTAAAGTCGAAGACTAGAAAATAATCTTCTACCATTT
TAAGATATTAATTTCCTACCTAGTTTGTGTGGCCTGCTTGGTTTTCATAG
GTCGGACACCCTTTTAAGATGGCGACAATTTTCATGATTTGTAACAATCA
TTGATTGGCAGCACAGCTTCGATTGCGCTGATGCGCCCTGCTGTTTTGAG
AGTCGTTATGGAGAATTTATTCAATATTTGACCTTTCGTACCTATATATA
GGCATTGGCAAAAGCTGAGAAGTTTGAAGCACAAGCATCTGAGTTGGAAG
GAAATCTCGAAGCCTGTGAAAGTAAGTACCATTTCACCATTCTTCTTCCG
ATAATAACCCCAAAACACCCTTGTCTCAGTGACTTTAAAGGAATCTTTAA
GCCAATAGGGATGAAATGCATGTGTAAATTATGTAAATAAATGTAAATTA
TTCATCGGTGGGTCAAAATCGGCTTTTTTTTTAATTAAAGTTACTTTTCA
GTGAGTTCAGTGAAATTTTCCAGTAGCACTGGGCGAAATAAGAGATTTCC
AATTTTGGAATTATCTTGAAAATATGATATTTCCATATACAATTGTAAAT
TTGAAAATATGACTTTTCTATATTTCCAAAGTTTAGGAAATCATGAAAAA
GTCATATTTCCATATTTACTAATGTGTATGGAAATATCACATTTTCAATA
TATCTCCAGGATTGGAAATCTCTTATTTCACCCAGTGCAGGCGGAGTGCA
GGTCAAGCGAGGTTAGCATTTTAGTGGAGAGGGAGTCCCAACGGATTTAC
AAAATGGTGTATTGAAACTACTCGCGTGCTTAAAAAGTTCAACTATCGAT
CAAGACGAGCAAATAAATCTTTTTTTGTGACCTGCCTAACATCACATTGA
AAAGAAGGGTTTTTTTTGCAAAACATACTTGTATATTACATTTGACAGGG
GATTGGCTGAAATATTTAAGGTGCGTATTTTATCATTTATCTCTAGGTGA
CTTGCAGCGTGAGAAAGAAGCTTACGACAAAACCAAATCCACTTATGACA
TCTTGCTGGCTGAGATCCAAACATTCTAAAGAAAGACTTCGTATTAATGA
AATAAAAGATGGTGAATTTATGTTAGAGAATGAGAGTGAGATGTAAAAGG
TGTATGACATGACCGCATGCTGAGCGATAATGATTATTCAATTTGAATGC
GTCTATGATTGAAAGAATTTGGTTTAGCTAAGTAGAAGAAATTAATTATG
TACCATACGAATGTGAAACTGTAACGTTGAGAATACTGTAGAAACTGACA
ACCTTGTGCAAGGACGTAGCATATACGATTTATAAGAATGGTGTAAATCT
ATTTCATCATGGATATTCTTAACTTTTTTGGACTAAAAATGGCATTCTTA
GCTTGAGTAGCAAAATTCCTTGATGGTGATATTCTTAGCATTATTCTTAA
TTTTTTGGCCATTTTCATTCTTATAGAGTGTACTCTTATAAAAAAGTGTG
TAGTTAAGAATATTTA

Coding sequence (CDS) from alignment at sc0000007_pilon:948140..952005-

>MSTRG.1500.3.p1 ID=MSTRG.1500.3.p1|Name=MSTRG.1500.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4374bp|location=Sequence derived from alignment at sc0000007_pilon:948140..952005- (Clytia hemisphaerica_ch_hm2_pilon)
GTGACTTGCAGCGTGAGAAAGAAGCTTACGACAAAACCAAATCCACTTAT
GACATCTTGCTGGCTGAGATCCAAACATTCTAAGCATTGGCAAAAGCTGA
GAAGTTTGAAGCACAAGCATCTGAGTTGGAAGGAAATCTCGAAGCCTGTG
AAATCGCGTCAAAACGTTGGAAGAAAAATTCATTCAACTTGGTAATAATT
TGAGAAGCATGGAACGATATGAAATAAAATCGAACGAACGAGGAACAGAA
ATCCAACTAAAAATCACTGAATTGCAAAACAAGGTGGAAGAGTTGGCACC
AGAGTTGACAGAAATGGAGGAAAATTTGGAAGAGGAAGAAGAAAGATGTA
ACGTGGCTGATGAACGGAAAAGAAAGTGAAACTGATTCAAGAAAAAGTCG
GAGATTTGGAAGAGAAATTGGACGAAATGGAACGACGACATGACGAAACG
TCCACTAAACTGGCGGACGCCGAGAAAAAGGGCGACGAGGTAAAACGAAT
GCACAATGAGCTCAGTGCACGCGCTGGAACGACCGCTACCAAATTGGAAC
AACTGGAAACAGAATTGAGCGAATATCAAGCCAGAGAAAAAGATGTCACT
GAGCTATATACCAAGATGGAGGTCATTCGAAAGAAGTTAGGAGGAATGAA
AAAGAAATTGGTTGAAGCAGAAACCGAAGCTCGAGGAATGGAAAAGGAAT
TAGAACAAGTCAACACAAAAGCCGAAAGTGTGACTTGCAGCGTGAGAAAG
AAGCTTACGACAAAACCAAATCCACTTATGACATCTTGCTGGCTGAGATC
CAAACATTCTAAGCATTGGCAAAAGCTGAGAAGTTTGAAGCACAAGCATC
TGAGTTGGAAGGAAATCTCGAAGCCTGTGAAATCGCGTCAAAACGTTGGA
AGAAAAATTCATTCAACTTGGTAATAATTTGAGAAGCATGGAACGATATG
AAATAAAATCGAACGAACGAGGAACAGAAATCCAACTAAAAATCACTGAA
TTGCAAAACAAGGTGGAAGAGTTGGCACCAGAGTTGACAGAAATGGAGGA
AAATTTGGAAGAGGAAGAAGAAAGATGTAACGTGGCTGATGAACGGAAAA
GAAAGTGAAACTGATTCAAGAAAAAGTCGGAGATTTGGAAGAGAAATTGG
ACGAAATGGAACGACGACATGACGAAACGTCCACTAAACTGGCGGACGCC
GAGAAAAAGGGCGACGAGGTAAAACGAATGCACAATGAGCTCAGTGCACG
CGCTGGAACGACCGCTACCAAATTGGAACAACTGGAAACAGAATTGAGCG
AATATCAAGCCAGAGAAAAAGATGTCACTGAGCTATATACCAAGATGGAG
GTCATTCGAAAGAAGTTAGGAGGAATGAAAAAGAAATTGGTTGAAGCAGA
AACCGAAGCTCGAGGAATGGAAAAGGAATTAGAACAAGTCAACACAAAAG
CCGAAAGTGTGACTTGCAGCGTGAGAAAGAAGCTTACGACAAAACCAAAT
CCACTTATGACATCTTGCTGGCTGAGATCCAAACATTCTAAGCATTGGCA
AAAGCTGAGAAGTTTGAAGCACAAGCATCTGAGTTGGAAGGAAATCTCGA
AGCCTGTGAAATCGCGTCAAAACGTTGGAAGAAAAATTCATTCAACTTGG
TAATAATTTGAGAAGCATGGAACGATATGAAATAAAATCGAACGAACGAG
GAACAGAAATCCAACTAAAAATCACTGAATTGCAAAACAAGGTGGAAGAG
TTGGCACCAGAGTTGACAGAAATGGAGGAAAATTTGGAAGAGGAAGAAGA
AAGATGTAACGTGGCTGATGAACGGAAAAGAAAGTGAAACTGATTCAAGA
AAAAGTCGGAGATTTGGAAGAGAAATTGGACGAAATGGAACGACGACATG
ACGAAACGTCCACTAAACTGGCGGACGCCGAGAAAAAGGGCGACGAGGTA
AAACGAATGCACAATGAGCTCAGTGCACGCGCTGGAACGACCGCTACCAA
ATTGGAACAACTGGAAACAGAATTGAGCGAATATCAAGCCAGAGAAAAAG
ATGTCACTGAGCTATATACCAAGATGGAGGTCATTCGAAAGAAGTTAGGA
GGAATGAAAAAGAAATTGGTTGAAGCAGAAACCGAAGCTCGAGGAATGGA
AAAGGAATTAGAACAAGTCAACACAAAAGCCGAAAGTGTGACTTGCAGCG
TGAGAAAGAAGCTTACGACAAAACCAAATCCACTTATGACATCTTGCTGG
CTGAGATCCAAACATTCTAAGCATTGGCAAAAGCTGAGAAGTTTGAAGCA
CAAGCATCTGAGTTGGAAGGAAATCTCGAAGCCTGTGAAATCGCGTCAAA
ACGTTGGAAGAAAAATTCATTCAACTTGGTAATAATTTGAGAAGCATGGA
ACGATATGAAATAAAATCGAACGAACGAGGAACAGAAATCCAACTAAAAA
TCACTGAATTGCAAAACAAGGTGGAAGAGTTGGCACCAGAGTTGACAGAA
ATGGAGGAAAATTTGGAAGAGGAAGAAGAAAGATGTAACGTGGCTGATGA
ACGGAAAAGAAAGTGAAACTGATTCAAGAAAAAGTCGGAGATTTGGAAGA
GAAATTGGACGAAATGGAACGACGACATGACGAAACGTCCACTAAACTGG
CGGACGCCGAGAAAAAGGGCGACGAGGTAAAACGAATGCACAATGAGCTC
AGTGCACGCGCTGGAACGACCGCTACCAAATTGGAACAACTGGAAACAGA
ATTGAGCGAATATCAAGCCAGAGAAAAAGATGTCACTGAGCTATATACCA
AGATGGAGGTCATTCGAAAGAAGTTAGGAGGAATGAAAAAGAAATTGGTT
GAAGCAGAAACCGAAGCTCGAGGAATGGAAAAGGAATTAGAACAAGTCAA
CACAAAAGCCGAAAGTGTGACTTGCAGCGTGAGAAAGAAGCTTACGACAA
AACCAAATCCACTTATGACATCTTGCTGGCTGAGATCCAAACATTCTAAG
CATTGGCAAAAGCTGAGAAGTTTGAAGCACAAGCATCTGAGTTGGAAGGA
AATCTCGAAGCCTGTGAAATCGCGTCAAAACGTTGGAAGAAAAATTCATT
CAACTTGGTAATAATTTGAGAAGCATGGAACGATATGAAATAAAATCGAA
CGAACGAGGAACAGAAATCCAACTAAAAATCACTGAATTGCAAAACAAGG
TGGAAGAGTTGGCACCAGAGTTGACAGAAATGGAGGAAAATTTGGAAGAG
GAAGAAGAAAGATGTAACGTGGCTGATGAACGGAAAAGAAAGTGAAACTG
ATTCAAGAAAAAGTCGGAGATTTGGAAGAGAAATTGGACGAAATGGAACG
ACGACATGACGAAACGTCCACTAAACTGGCGGACGCCGAGAAAAAGGGCG
ACGAGGTAAAACGAATGCACAATGAGCTCAGTGCACGCGCTGGAACGACC
GCTACCAAATTGGAACAACTGGAAACAGAATTGAGCGAATATCAAGCCAG
AGAAAAAGATGTCACTGAGCTATATACCAAGATGGAGGTCATTCGAAAGA
AGTTAGGAGGAATGAAAAAGAAATTGGTTGAAGCAGAAACCGAAGCTCGA
GGAATGGAAAAGGAATTAGAACAAGTCAACACAAAAGCCGAAAGTGTGAC
TTGCAGCGTGAGAAAGAAGCTTACGACAAAACCAAATCCACTTATGACAT
CTTGCTGGCTGAGATCCAAACATTCTAAGCATTGGCAAAAGCTGAGAAGT
TTGAAGCACAAGCATCTGAGTTGGAAGGAAATCTCGAAGCCTGTGAAATC
GCGTCAAAACGTTGGAAGAAAAATTCATTCAACTTGGTAATAATTTGAGA
AGCATGGAACGATATGAAATAAAATCGAACGAACGAGGAACAGAAATCCA
ACTAAAAATCACTGAATTGCAAAACAAGGTGGAAGAGTTGGCACCAGAGT
TGACAGAAATGGAGGAAAATTTGGAAGAGGAAGAAGAAAGATGTAACGTG
GCTGATGAACGGAAAAGAAAGTGAAACTGATTCAAGAAAAAGTCGGAGAT
TTGGAAGAGAAATTGGACGAAATGGAACGACGACATGACGAAACGTCCAC
TAAACTGGCGGACGCCGAGAAAAAGGGCGACGAGGTAAAACGAATGCACA
ATGAGCTCAGTGCACGCGCTGGAACGACCGCTACCAAATTGGAACAACTG
GAAACAGAATTGAGCGAATATCAAGCCAGAGAAAAAGATGTCACTGAGCT
ATATACCAAGATGGAGGTCATTCGAAAGAAGTTAGGAGGAATGAAAAAGA
AATTGGTTGAAGCAGAAACCGAAGCTCGAGGAATGGAAAAGGAATTAGAA
CAAGTCAACACAAAAGCCGAAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1500MSTRG.1500Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1500.3.p1MSTRG.1500.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1500.3.p1.exon7MSTRG.1500.3.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1500.3.p1.exon6MSTRG.1500.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1500.3.p1.exon5MSTRG.1500.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1500.3.p1.exon4MSTRG.1500.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1500.3.p1.exon3MSTRG.1500.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1500.3.p1.exon2MSTRG.1500.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1500.3.p1.exon1MSTRG.1500.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007_pilongenomesc0000007_pilon:948140..952005 -