MSTRG.14981.1.p1 (mRNA) -

Overview


Name	MSTRG.14981.1.p1
Unique Name	MSTRG.14981.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000129_pilon:20407..22795+
coding sequence from alignment at sc0000129_pilon:20407..22795+

mRNA from alignment at sc0000129_pilon:20407..22795+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.14981.1.p1 ID=MSTRG.14981.1.p1|Name=MSTRG.14981.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2389bp|location=Sequence derived from alignment at sc0000129_pilon:20407..22795+ (Clytia hemisphaerica_ch_hm2_pilon)
tcgaagtaaattcttatccccTTCTTGGAGCTTCGAATAACCAGGAGTCT
ACTGTACTTCAAATTGCAAACATCGTACCTTtccatttcaacattttttg
tttattttatcgtTTTAGTAAACTgataaatagaaagaaaaacaacgaaa
aatcatcaactggaagcaaaaaatttgacacatCGAGAGATGAAATGTGT
CATTTCCAATCGTTTGGTCCGTTTGTTTGGTCGTGCGATTCACTGTTTAT
CGAGAATCGGTGATGAGTTATTCTTAGAAGCTTTGAAGGACGGGCTTGCA
CTGAGAACTGTTAATTCCTCTCGATCCGCATATGCATGTTTTATGTTCAA
ATCAGAATTCTTCGTTGAATACCAACAAGGCTGCGATGAGATTGATAGTT
CCAATCCAGCTGATAtgttaaaatgtaaaatctcTATGAAATctgttttg
gcaattttcaaaTCACTTGGTACAATTGAAAAGACAGTTGAGCATTGTAA
GATCGAATTCAAACCAAATGAATGTCGTCTCATATTCACTTTGTATTGTA
AACATGGAATCATCAAAACCCACAATCTCACCTACCAGGAATGCGAAAGT
TTACAGGCTGTATTCGCTAAAGACTTTTGTCCAAACCAGATTCAAACACA
GGCTAAAGTGCTTTTAGACACGGTCTGTAATTTCCCGAACAGTTGTGAAG
AGATAAGTTTAAGGGTGAGTCCTGATTGTGTTAAAGTGAAGAACTTTGTT
CAAGAGGATGTTGATCCGATGAAGGTCGTTCACACTGAAATGACTCTTGT
CCCTGAAGAATTCGAAAACTTTCAAATCGGTATCGATACTCTCGTTACGT
TTTGTTTAAAGGAGTTACGAGCCGTTCTTACGTTTAGTGAATTCGCGAAT
CAACCGGTTACTCTGTACTTCGAACACCCTGGCAAACCGATCGTGTTTGC
TCTGGACAATGATGTTCTATACAGCGGGGATTTTGTCATGGCAACTCTGG
CCGAGACTGATTTCACATCACAAGAAGAGAACACTACAATCGAAGACGCG
ACTATTAATCGTACCAATAGACGAATAAACCAAACTTCGAAATCGTTTAA
CCGAACAACACTCAATCAAACAGACACTAATGATCAGCGCGTTCCTAAAC
GACGTAAACAAGATAAAGAGGATATCGTTATATCCAAACCTTCTGCTGCT
ACCAATAACCATAGTTCTAAATCAACCCAACCCGTAAATAACAACCGACC
TAAACCCACCGAGACCTTGTCTACAAACAAATCTAAATTATCGATGACTA
CTAATAACTCGAAAAACACTACAAAGCGAGCAATGAAAGAAACAAGTCAA
CGAGTTCCGCAATCGGGAAACACGCCGATGGTCCCGAGTATGGCGGACGA
CGACTTTTTCTCGCCGACTTTTCCAATGGCAAATATAATTGCGGACGAAG
CGACTGAATCGCAAGCCGACAAAAACACGCATAACACCCAGCATAAATTG
AATTCCTCTATCCTgcaaaacaaccaaaacaaaacattaaacgaaaaacT
TGTTGAAAGCATCTTAGAAGAAGATGATGATATTTTGATGGGAACGCCAC
CGCCCTCTCCGCCCAAGAAAAGCAAGAGAGGTTCATTCTTTGGTACTTGT
AGTTCTAATGGGGTGGGTACAGACGTGAAGAGGGCGGAGAAAACTGTGTT
ACTGGCGGCTGATACAGACGATGAAGATGAAAGTGATTAAGGAGggactt
ttttttgtttaataatGAAAAACGAAAAGTGTTTACCGTGTCAATGAATT
ACTTTGGATTTTCTCACATATGTCTTCTAAAACATTGGATTGAACTTCCT
TTTCCATCTTTGTATGAAATTGCGATCATCTTGAAACGTGATcgttgaaa
tttcaaaacaatcgaTATTGTAGTCTAAcatggcggattattttgcttta
aGTCCTGTAACCTCAAATAGATAGTACCTCCATCAAGTGATATCTGTAGT
TCACTTCCGTAATTGCTTTCGTTCGTCTCTAAATTCTGTTCCTGTTACGT
TTGAATCGTACTGTTATATCATTGGAAAAACCCCTTGCTAGGTTAACTAT
TTTTAAGGTTAATGGAACGGCAATTTTCACATTAGCAGCTCTAACCATTA
AAAACTGGATATTGACAAAACTCCCGAGaatagaaagtgaaaaatgaaac
tgCTGCCTTGCTCTTGTCTCGCTTAAGCTCCCGTTTCGcccttaactttt
ttgaaaattgagaatatttgtTAAATAGATTATTTACTAGGTATAGGTAG
TGTATATTTATCTGAAAGAAATTAAAGATCTGTTTATTTTTCAAgtagaa
aaaacgaaaaaatttaACCAGCTTCTCAATGTCCAAGTG

Coding sequence (CDS) from alignment at sc0000129_pilon:20407..22795+

>MSTRG.14981.1.p1 ID=MSTRG.14981.1.p1|Name=MSTRG.14981.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1551bp|location=Sequence derived from alignment at sc0000129_pilon:20407..22795+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAATGTGTCATTTCCAATCGTTTGGTCCGTTTGTTTGGTCGTGCGAT
TCACTGTTTATCGAGAATCGGTGATGAGTTATTCTTAGAAGCTTTGAAGG
ACGGGCTTGCACTGAGAACTGTTAATTCCTCTCGATCCGCATATGCATGT
TTTATGTTCAAATCAGAATTCTTCGTTGAATACCAACAAGGCTGCGATGA
GATTGATAGTTCCAATCCAGCTGATAtgttaaaatgtaaaatctcTATGA
AATctgttttggcaattttcaaaTCACTTGGTACAATTGAAAAGACAGTT
GAGCATTGTAAGATCGAATTCAAACCAAATGAATGTCGTCTCATATTCAC
TTTGTATTGTAAACATGGAATCATCAAAACCCACAATCTCACCTACCAGG
AATGCGAAAGTTTACAGGCTGTATTCGCTAAAGACTTTTGTCCAAACCAG
ATTCAAACACAGGCTAAAGTGCTTTTAGACACGGTCTGTAATTTCCCGAA
CAGTTGTGAAGAGATAAGTTTAAGGGTGAGTCCTGATTGTGTTAAAGTGA
AGAACTTTGTTCAAGAGGATGTTGATCCGATGAAGGTCGTTCACACTGAA
ATGACTCTTGTCCCTGAAGAATTCGAAAACTTTCAAATCGGTATCGATAC
TCTCGTTACGTTTTGTTTAAAGGAGTTACGAGCCGTTCTTACGTTTAGTG
AATTCGCGAATCAACCGGTTACTCTGTACTTCGAACACCCTGGCAAACCG
ATCGTGTTTGCTCTGGACAATGATGTTCTATACAGCGGGGATTTTGTCAT
GGCAACTCTGGCCGAGACTGATTTCACATCACAAGAAGAGAACACTACAA
TCGAAGACGCGACTATTAATCGTACCAATAGACGAATAAACCAAACTTCG
AAATCGTTTAACCGAACAACACTCAATCAAACAGACACTAATGATCAGCG
CGTTCCTAAACGACGTAAACAAGATAAAGAGGATATCGTTATATCCAAAC
CTTCTGCTGCTACCAATAACCATAGTTCTAAATCAACCCAACCCGTAAAT
AACAACCGACCTAAACCCACCGAGACCTTGTCTACAAACAAATCTAAATT
ATCGATGACTACTAATAACTCGAAAAACACTACAAAGCGAGCAATGAAAG
AAACAAGTCAACGAGTTCCGCAATCGGGAAACACGCCGATGGTCCCGAGT
ATGGCGGACGACGACTTTTTCTCGCCGACTTTTCCAATGGCAAATATAAT
TGCGGACGAAGCGACTGAATCGCAAGCCGACAAAAACACGCATAACACCC
AGCATAAATTGAATTCCTCTATCCTgcaaaacaaccaaaacaaaacatta
aacgaaaaacTTGTTGAAAGCATCTTAGAAGAAGATGATGATATTTTGAT
GGGAACGCCACCGCCCTCTCCGCCCAAGAAAAGCAAGAGAGGTTCATTCT
TTGGTACTTGTAGTTCTAATGGGGTGGGTACAGACGTGAAGAGGGCGGAG
AAAACTGTGTTACTGGCGGCTGATACAGACGATGAAGATGAAAGTGATTA
A

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.14981	MSTRG.14981	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14981.1.p1.exon1	MSTRG.14981.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14981.1.p1	MSTRG.14981.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000129_pilon	genome	sc0000129_pilon:20407..22795 +

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MSTRG.14981.1.p1 (mRNA) -