MSTRG.1496.4.p1 (mRNA) -

Overview
NameMSTRG.1496.4.p1
Unique NameMSTRG.1496.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000007_pilon:923968..930364+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1496.4.p1 ID=MSTRG.1496.4.p1|Name=MSTRG.1496.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6397bp|location=Sequence derived from alignment at sc0000007_pilon:923968..930364+ (Clytia hemisphaerica_ch_hm2_pilon)
CTTGTATAAGTTGCATTGGGgaaagaaaatattgacaaTCTGTCAAACAG
TGTCTCACAGAGAGGGGCACAAGGCGCAAACTTCTAAGAAATATGCGCGC
TCAACTTCTACTTAGTGTTTTTTGGGTGTTTGTGAATTTTCATTGTGTAT
CTATGAATGAGTTTGAACTGCCTGAAGGTAAGCGGCTCTTTGGAATGGTA
AATGGTTTCGCcttattgattttttcctttgttcCTCGTTTCATATAAGc
tagtttatgtatgtgtgtttttcagcgacggagaggGTCAGCTTCTGATT
TTTCTAGAACCtgattgactgaggacgacCGTAAATCAACACTTTTTCCG
TCCTCGATTTCGCGGGTCAAACTGAGAGTTATTCAAAATTGCTTCACTCA
CTCTGCTACCCTCAAAAGATTCATTCATACTGCACTATCATAATAAGTTC
AATAGCAAAATAagtaaatacacgtttttttttataaggaacacgtttat
aaggaacgcaaggctgaaaatggttcaaaaaataaggaattgttaaggaa
ctgctcaggctgagaataagtggatttgaaaataatgtaccttattggga
ctaatttgaccaaattttgatctttcaaggggcaaaaagttcaaaatttg
ctatgtagtaaggaactcgataaggaactttgagactgaaattctctgta
aaaataaggaactccaggctcagagcaaagttaaggttccttataaaaaa
aacgtgtacaattcCTCTTTCTTAACTTTCAGATTTCTGCAAAGACAAGC
CCATCTTCAATGAACACCAAGTTGAGTGCAATAAATATATCATATGCGGC
GCCCTCGTGCCGGTTATCCTCAAGTGCCCAGAGCCACTAGCATGGGACAG
CAGACGAAACATTTGTAATTGGAGACGCTACACCAAATGCAAAACAGGTA
AGGGTATCTTAAATGTATTTTGCTGAGGAAAACGCTgctactttataaga
actatcGCTTGATGGAGAATTGAACTTATTTAGTTTTCTTTTGCAAATAG
TTtcaaaagaaatggaaaatcatACTTTTATCATATTAGTTAAACCAAAT
TTGACCTCTCTTTTAGAACCAACAACGACAGCTACCAATACTAACCAAAA
GTGACCAAACACACTATACCTTCTAACACCAGAGGTTGGTACCATAAAAC
TGAGCGTGTAAAACTTTAACCGTTTTTTAAATGGTATTGAGTAATAGCTG
AACACTATTCTTCTACCGGTAGTAAAAAAGTTCAACCTTCTCCTATTTCA
CAGTGCTTGCTGAATTGAAGTGTGATCATACAAAATGTACCTTACCAAAT
TGTCGTTGTCAAAGCCCACAGGTTCCTGGTGAATTGCCAACTTCACAGGT
CCCACAAATGGTTCTCATCTCATTCGATGGGCCTGTCAATCAAGCAAATC
ATGAATTTTTCACTGAAACTTTTGATGCTCGGTTGAATCCAAATCGATGT
CCAGTAAAAGTGTCCTTCTTCGTATCGGATCATGGAAATGATTATAAATT
GACTCAGAAGCTTCATCGGAAAGGTTGGTACATTGTCATCtttgaattct
caaaaaaaaacctTGGCTTATatatagcgagcacctcactaaaaaccggg
atttttcatctcgtttttaatgagttccactttgacgatttttgaaaaat
agaagcttttcaagtgttttgacgcaaattcgattttttcctcctgcaaa
ggcttcaaaagtttaaagtgacgtcaaaaaaccgaatgtttggagcccga
aaacctgggcttaaaacattcgaaaatgtcgcaaagtggaatggacgtta
attgcgtagaaaaaacgcgggtgacgtataggtctagtataggctatggC
TTATACAGATGTGGAAAAGTAAAATTTGTCATGATTGTCCGACAATCTCA
ATATGACTTGATTCAGGATTGAAATATTTTAGTGGTCGCAATTTCAGCTT
TATCAGTATTTTAGTCCTTATTCCTAATGAGTTCTGCTTCAGAAAGGCAG
AACATCGgagaatttcatgaaaaaggactTCTGTGTAATGTGgtgaaatt
tctttcttttttttaaagtagtttttttcttttatataaagGTCATGAAA
TCGCTGTCCGATCGTTAGCACCTGACCAAACACACGGATACTGGAAAAAC
ATCAGCTATCTTGATCTCGTCAAAGATGTGATTGGTTTAAAGCTCAAACT
CACATTGAATGGAATCAATCACGTGACCGGTTATCGAGCACCTTTCCACC
AATCAGCTGGTGACACAACTTTCGCGGCTCTACAAGAGTATGGGTTCGAG
TATGATTCGTCTCTACCAATCAGATCGAAGGAGAAACAATGGTGGCCGTT
CACGATGGATTCTGGGATACATTCGTTTGATTGTTTGTCCCCTCCCTGTC
CGAAATGTAAGTAAGCCCATTCATACTCAATACAAGTTGAATAGTTGTAA
GAGCTATGAGAACTTTACACCACGGTCATTGTATGGGCTAAACATCAAGC
GGCGATACTTTTTacaaaaagcagaaaaaattaGCCAAACCAAGAAATCT
CTCTCATTTGGAAATTGATTATATTATATTTCAGTTATATCTTAAACAAA
AGATAATTCGCTCTTTCAGACTCGTACCCTGGATTATGGGAGTTACCATT
GACGTCATTGAGTGACGGAGAAGAATCTTGCAGGACCTATCAATCGTGCA
CGAATTACGTTCAAACATCAGATGGATTCTACGAtttcttgatgaaaaat
ttcttcCGATTGTACCAAGGAAATAAGGCACCTCTTACACTGGCAGGAAC
AGCTTCATGGTTGATGTCCCCAAGCCATCCTTACAGAAGACAAGGTATTA
GGACTtttctattgtcattttacagtGTCTGTGTTTGATAAATGGTTACG
ATTCTACGGGTGAGTGTATCATTGGATTATTCAATTATGCAGGTTCATAT
TGCTGGGCTATCAATCAAGTCTCAGATTATCAATTTATACTGGGGAACTG
CGATGCTTTTATTTCCCTATTTTCATTGTCTGCCGAATTCCGTTCCATAC
AATACTTCGGTCCTTTATCCGCTACCTATATCTCTATGTACACGCATGTG
TAAATGTACTGTTATAAAGTATAGTTTTAAGGATGAATAGAGGGCATGAA
TTTCAAAGTTAACAGCGAGAAAGAAGGGATGGAACTTTTACCGTCAGAGA
ATAAAAAGACATAGCCATAGCCTACCATAGGACGTTCTCGTGTCTTGTGA
GAACTTTAAATTGTTTGAAGAAACACGCTTGTCCTGTTCAGAAGTTAGAA
GAGGAAAAGTCAGACACCAAATAGTCACAAAGATTATTCTGAAATAACTA
GAAAAAGTCAGAGCGCTAATGCAAGATGATTGAAACGATTATTGAGTAAG
AGAAGCAAAGAAGGAAAGTTTGGAGGtatgtttcttttattgataGAATT
TAGAGTTGTAATCAATTGACAGTACTAattggtcagccccggtgaccctt
caaatcggtTCCGCTGtttttttCCAGCCGAGTCGCCATCATCATGGTGG
GATTTGGATAATCAGCTTCAATTCCGATTTTTCCCGATTCGATTTTTGGA
CAACCGGGTTATAATGATATGTGTGCGTCGGGATGCGTTGTAATTTCATA
ATGATTTCATATAGCGCGTCGGCGTTATTGCATCAGCCGTTATCTCCCTT
ATATTGCGCCACCTCTTTCGAAGCGTACTGTGGACAATTTTCTGAAATGT
TTGAGTAGATTCGCAGTAGTAGCTGGCTAAGTTGTTTCACAAACGTGATG
GTTGAATGGCTGGAAGAAGAGTTCAAGCAGTCTCAACTTTCATCATATCT
TGAGGTTGAGGTGAGAGTTTTTGATTTATATGAATCAAAGTTTATTGATT
CCTtgtcaaagttattttcaaaaaagatagcaTATTCAtagtttatattt
tcttttttgcataTTATAAATCTctattataaatcaaaatcctgcaaaat
ttactaaaaatgaACACTCAAATCTCTCTGTTGATTGACAAAAGAATAAT
GGACAAAATGTATATATGAATGAATTTGgtgttgaaatgaaaatgttggt
AATTCGTTGAttgtttattgttgttttaCTATCTGGTGTTACATGTTTAT
AGTATCGAAGAAGTCCATGGCTTTGCATCGTTTGAGCTTGGTATTACCAT
CGCCTTCCTGTTTTTGTTGTTGGTTCGTTTCTTCACACCTGAATACTGCA
CTGAAAGAGTTCATAAAAGTGATAGGTAAGCTAAAGGTCTCTTTTTGATC
CATCAAAATTTGCTAACGCAGACACTTTAACGTGTGTTTCTAGGTATATC
TTAGAAAGCAATCATTTTATAGTCCttccattttcatttgaatAATGTCT
TTTTATTCGTCCAGCCATCTCTCAAAGAACGTTAAAAATCTATGATAGTC
TTTTGTCTCAATGAAAGAATAAAAGGGATTTGTTAGCGCTAGTTTGCAAG
CGTTCTGTTTCATTACTTTAACAtacaaaatatttgataaaaagtaTACT
GGTATAGGACTATACCTTAAGCAATTAATCATGAATGATCTAAGTTTTAA
AGAGTGAAGTGATTTTGTTcatgttgttattattatttacCTGTGTATGG
GACTTAAATATCTTCATTGTTTTGTTGTAGATATGCTATGCCGGGATCAA
TCAATAACCAAATAAAGACCCTGtcaacgcaccggacttaacgaacacgg
GACATGCGAAAGTCcagtgtaaaatgagaatttttttaccatcggacaat
ctctacaccggacttaaggaagtcggatgtctggtgtcggagaaggatat
ttttttccaccggacaatcaaaacaccggaaaCACTAATTCAATGTCTTG
TTATTGGAATTATTGCTGTTGGAATAACATTGGTATTGGACAATAATTAA
AGACTTTATTTCAACTAAAGAGTATTACATATTTCAAATGTATTGCAAag
aagtactctcgggtacctaatagccggggggggggttggaataagcaggg
gggttggaaaaaatctcaaaatttaataagcgggggggttggaataaaaa
tgtcctgggtggaaaatgtttgaaaaggaggctaatacagcagaattaag
acaaaaaagggaactttcaaaaacattttcccaaaaattaataagcgggt
tggaataagaatgtcctgggtggaaaattttcgaaaaattaattagcggg
gggggacggctattaggaaCCTGAGAGTAATTAATATTGTACAATAGTAA
TATTGTTAATATTTATAGACAATTATATGATTATCTAAAACAAGattgtt
caaaatttatgttaaaaatgaatttttttcaaaccttgttacacattttt
tttataagcaactccatttTTCGGGCCAGGCCTGGAGTTGCTAAGGGTTT
TTTGAAATCCAGGCTCAAAGTTTGCTTAAAGattttcaagcacgtttttg
cattttttaacaatttttcaattttgaatgggcagtagaggcatttttcg
aagattttcaaGTTGTGTCAAAGTTCTTTTTTAttgctgaggaaaaaagt
tgctAATTTGGATTTGAGGCCTCAGGGTTGCTAAGCAAGGTCCTTATTTT
TTGGGCCATATTGAGGCCTGAGCCCTAATcaactcggttgcttataaaaa
aaatgtgtaatcgaCCCTGACAAAATGTTGACGATTTttgcacccatttt
gcctaagccACCTCCAGGAGTAGTTTATCGTTATCTTGTGATCACATATC
CTTTTTGCTACTCTCTCTTGATCCAGCTTATCCTTTGATCTATCTTATCC
TTtagggctgaccttccagcgcagctggtttattttataTCGATTCGACT
CGGTTCCCAACCCATCCATAACGTCATAAAACGAATGAATGTTATTGATT
ATCTTTGCTGATATTCCCAACCCATTGACTCTATACCATTACCAATACTT
GTTTACGTTTTGAATTCTTAGTTTTGAtggtttcaatttcttttagGTTT
CATGAAATTCCTAAATCACATCGGTTCGTTCAAAGATGTTTACGTTGTCA
GTGGATCACAGGCGTTAGATTGGATCCGCAGCCCTGTATCGAGCGAGAAA
AAGATTGCCGATCGTCTAAAGTCTTGGTcgtgttaaaaaaattcccatgt
tttatGTTTTAATGTGACAACATTCACAGCTGAATGGCAGAGAGGGGTCT
TTTGATTCCAAACTCAGATCTTGTAGATAGTTTATATTATAGAAATTATT
TATtccaaaagaaatatttacccAATATAAAACATTGCTCTTGCTTA

Coding sequence (CDS) from alignment at sc0000007_pilon:923968..930364+

>MSTRG.1496.4.p1 ID=MSTRG.1496.4.p1|Name=MSTRG.1496.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3384bp|location=Sequence derived from alignment at sc0000007_pilon:923968..930364+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTCTCATCTCATTCGATGGGCCTGTCAATCAAGCAAATCATGAATT
TTTCACTGAAACTTTTGATGCTCGGTTGAATCCAAATCGATGTCCAGTAA
AAGTGTCCTTCTTCGTATCGGATCATGGAAATGATTATAAATTGACTCAG
AAGCTTCATCGGAAAGGTCATGAAATCGCTGTCCGATCGTTAGCACCTGA
CCAAACACACGGATACTGGAAAAACATCAGCTATCTTGATCTCGTCAAAG
ATGTGATTGGTTTAAAGCTCAAACTCACATTGAATGGAATCAATCACGTG
ACCGGTTATCGAGCACCTTTCCACCAATCAGCTGGTGACACAACTTTCGC
GGCTCTACAAGAGTATGGGTTCGAGTATGATTCGTCTCTACCAATCAGAT
CGAAGGAGAAACAATGGTGGCCGTTCACGATGGATTCTGGGATACATTCG
TTTGATTGTTTGTCCCCTCCCTGTCCGAAATACTCGTACCCTGGATTATG
GGAGTTACCATTGACGTCATTGAGTGACGGAGAAGAATCTTGCAGGACCT
ATCAATCGTGCACGAATTACGTTCAAACATCAGATGGATTCTACGAtttc
ttgatgaaaaatttcttcCGATTGTACCAAGGAAATAAGGCACCTCTTAC
ACTGGCAGGAACAGCTTCATGGTTGATGTCCCCAAGCCATCCTTACAGAA
GACAAGGTTTCATGAAATTCCTAAATCACATCGGTTCGTTCAAAGATGTT
TACGTTGTCAGTGGATCACAGGCGTTAGATTGGATCCGCAGCCCTGTATC
GAGCGAGAAAAAGATTGCCGATCGTCTAAAGTCTTGGTcgtgttaaATGG
TTCTCATCTCATTCGATGGGCCTGTCAATCAAGCAAATCATGAATTTTTC
ACTGAAACTTTTGATGCTCGGTTGAATCCAAATCGATGTCCAGTAAAAGT
GTCCTTCTTCGTATCGGATCATGGAAATGATTATAAATTGACTCAGAAGC
TTCATCGGAAAGGTCATGAAATCGCTGTCCGATCGTTAGCACCTGACCAA
ACACACGGATACTGGAAAAACATCAGCTATCTTGATCTCGTCAAAGATGT
GATTGGTTTAAAGCTCAAACTCACATTGAATGGAATCAATCACGTGACCG
GTTATCGAGCACCTTTCCACCAATCAGCTGGTGACACAACTTTCGCGGCT
CTACAAGAGTATGGGTTCGAGTATGATTCGTCTCTACCAATCAGATCGAA
GGAGAAACAATGGTGGCCGTTCACGATGGATTCTGGGATACATTCGTTTG
ATTGTTTGTCCCCTCCCTGTCCGAAATACTCGTACCCTGGATTATGGGAG
TTACCATTGACGTCATTGAGTGACGGAGAAGAATCTTGCAGGACCTATCA
ATCGTGCACGAATTACGTTCAAACATCAGATGGATTCTACGAtttcttga
tgaaaaatttcttcCGATTGTACCAAGGAAATAAGGCACCTCTTACACTG
GCAGGAACAGCTTCATGGTTGATGTCCCCAAGCCATCCTTACAGAAGACA
AGGTTTCATGAAATTCCTAAATCACATCGGTTCGTTCAAAGATGTTTACG
TTGTCAGTGGATCACAGGCGTTAGATTGGATCCGCAGCCCTGTATCGAGC
GAGAAAAAGATTGCCGATCGTCTAAAGTCTTGGTcgtgttaaATGGTTCT
CATCTCATTCGATGGGCCTGTCAATCAAGCAAATCATGAATTTTTCACTG
AAACTTTTGATGCTCGGTTGAATCCAAATCGATGTCCAGTAAAAGTGTCC
TTCTTCGTATCGGATCATGGAAATGATTATAAATTGACTCAGAAGCTTCA
TCGGAAAGGTCATGAAATCGCTGTCCGATCGTTAGCACCTGACCAAACAC
ACGGATACTGGAAAAACATCAGCTATCTTGATCTCGTCAAAGATGTGATT
GGTTTAAAGCTCAAACTCACATTGAATGGAATCAATCACGTGACCGGTTA
TCGAGCACCTTTCCACCAATCAGCTGGTGACACAACTTTCGCGGCTCTAC
AAGAGTATGGGTTCGAGTATGATTCGTCTCTACCAATCAGATCGAAGGAG
AAACAATGGTGGCCGTTCACGATGGATTCTGGGATACATTCGTTTGATTG
TTTGTCCCCTCCCTGTCCGAAATACTCGTACCCTGGATTATGGGAGTTAC
CATTGACGTCATTGAGTGACGGAGAAGAATCTTGCAGGACCTATCAATCG
TGCACGAATTACGTTCAAACATCAGATGGATTCTACGAtttcttgatgaa
aaatttcttcCGATTGTACCAAGGAAATAAGGCACCTCTTACACTGGCAG
GAACAGCTTCATGGTTGATGTCCCCAAGCCATCCTTACAGAAGACAAGGT
TTCATGAAATTCCTAAATCACATCGGTTCGTTCAAAGATGTTTACGTTGT
CAGTGGATCACAGGCGTTAGATTGGATCCGCAGCCCTGTATCGAGCGAGA
AAAAGATTGCCGATCGTCTAAAGTCTTGGTcgtgttaaATGGTTCTCATC
TCATTCGATGGGCCTGTCAATCAAGCAAATCATGAATTTTTCACTGAAAC
TTTTGATGCTCGGTTGAATCCAAATCGATGTCCAGTAAAAGTGTCCTTCT
TCGTATCGGATCATGGAAATGATTATAAATTGACTCAGAAGCTTCATCGG
AAAGGTCATGAAATCGCTGTCCGATCGTTAGCACCTGACCAAACACACGG
ATACTGGAAAAACATCAGCTATCTTGATCTCGTCAAAGATGTGATTGGTT
TAAAGCTCAAACTCACATTGAATGGAATCAATCACGTGACCGGTTATCGA
GCACCTTTCCACCAATCAGCTGGTGACACAACTTTCGCGGCTCTACAAGA
GTATGGGTTCGAGTATGATTCGTCTCTACCAATCAGATCGAAGGAGAAAC
AATGGTGGCCGTTCACGATGGATTCTGGGATACATTCGTTTGATTGTTTG
TCCCCTCCCTGTCCGAAATACTCGTACCCTGGATTATGGGAGTTACCATT
GACGTCATTGAGTGACGGAGAAGAATCTTGCAGGACCTATCAATCGTGCA
CGAATTACGTTCAAACATCAGATGGATTCTACGAtttcttgatgaaaaat
ttcttcCGATTGTACCAAGGAAATAAGGCACCTCTTACACTGGCAGGAAC
AGCTTCATGGTTGATGTCCCCAAGCCATCCTTACAGAAGACAAGGTTTCA
TGAAATTCCTAAATCACATCGGTTCGTTCAAAGATGTTTACGTTGTCAGT
GGATCACAGGCGTTAGATTGGATCCGCAGCCCTGTATCGAGCGAGAAAAA
GATTGCCGATCGTCTAAAGTCTTGGTcgtgttaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1496MSTRG.1496Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1496.4.p1MSTRG.1496.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1496.4.p1.exon1MSTRG.1496.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1496.4.p1.exon2MSTRG.1496.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1496.4.p1.exon3MSTRG.1496.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1496.4.p1.exon4MSTRG.1496.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1496.4.p1.exon5MSTRG.1496.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1496.4.p1.exon6MSTRG.1496.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1496.4.p1.exon7MSTRG.1496.4.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007_pilongenomesc0000007_pilon:923968..930364 +