MSTRG.14856.1.p1 (mRNA) -

Overview
NameMSTRG.14856.1.p1
Unique NameMSTRG.14856.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000126_pilon:737220..740048+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14856.1.p1 ID=MSTRG.14856.1.p1|Name=MSTRG.14856.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2829bp|location=Sequence derived from alignment at sc0000126_pilon:737220..740048+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttggacCTTTTCAAAAGATAATTTCCACTTGACAAACAATGACGACTG
AGGAAAAACTTTCATGGTATCAAAAAAGCAACTTCTTTGTTTATAAGAAT
CTTCTGGTTGTTTCATTGGCtgaattttgtaatttcttcGCATTTAGTAG
TACTCAAAGCTTACAAAGTAGCCTCAATGCTGAAAGAGGCTTCATATCAT
TATGcgttttgtatgtattttgtgCAGTATGTTTGTTGTTCTTACCGAAA
CTTCTGATTGCGTGTATtggattcaaattttcaatagcTCTGGCAATTTT
TGGATACACAATCTATCAAATGATTCAATTCCACCCAGCGACTGGCATGA
TGATTTTCGGAGCTATAAGTGTTGGTGAGAATGCTCATTTAGAAgtctat
ctttttaaaattaattttaattttgtagaATAGAATATatcagtggatac
cccttaaaacctacaaaggtTTTCGGCTCTCTTAGTCACCAACTTATTTT
TGACACGTAATTCGAGAccaaaaagacttttttataaaaagttattcgag
agAAACCATTttataggttttaaggggtaaatagctaaaaagGCATTTTT
CACTTCcacgtgaaaaactgaaaaatggtttctacaaaacatcactgcta
gggaagaaaACCATAGACAGCGTATTTATCACAAAaaatttgagcctcaa
attcCACCCTAAAGTTCTAGATAGAGGATACCTCTATTTCTTGTAGGTTT
AAAGGGTCCACTGGTCCCGCCACTGGTAGTTAGTTTTCACATCGACATAG
CAGCAttcgttttgtttttcttccagGTTTTTCAGGGTCAGTCTTTTGGG
TTGCTGTACCCTCTCCAATCACCGTTTTGGCTCGTCAACATTCACAACAC
ACTGGAAAAGACTTTGAAATGACCAATCAGAAGTTTTACGCAATGtacta
ttttttatttcgattttccCTCGTACCCAGTAACCTGTTACTATCTTCTA
TCCTTAAGCACAGTGAGTTCaacattttttgcttgataTATTCACAATGA
AACAATCCCTTGTTCTCTCTAAAAAGTTTGGTCTCGAAATATCCAAAAAT
CTCATGCCTTTTGTAATCAATGAGGCCCTcccagtcacctttcaaataAC
GCAATCACGGAAAAagatttccaaatcacgttatcaagataaattttctt
tctatcacgatcacgttggTTTCTCCAATCACGTAATCATGCacttttaa
atcttaaatcacAAACTTAAAAAACGCCCAAttacgccatcacgaaaacc
gctagGGGCCTCACAAATTCCACCATTGAAAGTAATAAATTCCaccattg
aaaatgaaataggGGAAACTGCCTTCCAAAACCATCTCTATTAATTTCTT
TAGCCTAAGATAATAAGAAGCTTTATCTGCACTTGGTGAATGGTGTTTTA
AGAAACTTAGAGAGAGGTGAACCGGAGAACAGTTTCCTCCACCTACGCTA
CATACCTAACAAAAtccttttttaaataaatgaaCCATAAAAAGCCAAga
ttggctgcgtttagaccagcctggcatttgtaattgcttgcagtattctt
ttgaattctattgttccgcgcaattgttcggtttgtcaaatgcctaatga
tgccagcgtgttggcatttcgttggcatttgaaatgccattttgagcaaa
ggaatccccccttttctggcatttcaaatcaaacaaaggaaccaaaacaa
agagaaaaaatgacatttttgatttttgaaagtatttgcacgttttttat
tcagttctttctatagattgtaaaatttgccaGATTTGCCATAGCTGAGc
tctacggcaaaaagtttcagttttaatgactgcagtttttgaaaaattcc
atgcttttcattgtttgatctgtcaaagttgaacttgagggaatcacctt
ttcagtaatgactctaaaaagacgattccttaaatgtcatgatagaaaat
aaaatagagaAGCTATTAAAAttgaatccctcatgagcaaatgccaaatt
acaaatgccagttggtctaaacgcagccattgcAAGTCAGAATTCTACAT
TgtaaatttgtcgttctttaaaccatATGTAATCAATTCCCATGATAATG
AAAGTGGATTGAATACGTAGAGGtagtacagtcactttcggtcggggttg
tggacggtgatatttttcgtttttatgaAATGTGTCATTCTTTTTGTCTA
ATTTTAgttaatgcaggattctttattagataaaccccctcttgTGTgga
tcaaaaaaatcaaaaaatcaaaaacattttctttttaacgatatttcgat
ctttacagatctttatcaagtttttaaaaataatttttagatgACAGGAA
GGTTAATTACCATACCAACTCCACATTACAAATGAATTTGCAGTGTGGTA
TAAAAGCATGCCCAACATTAACCAGCACGCTGTCGCATGTCAACATAAAA
GACGCCCACAGGTTATTCTGGATTTACTTGGAAGTTGGTCTTTCAGGAGT
ACCAATCATTTTGCTCTTCTTTTCAAACATCAAAGAACAAAAAGACAACC
AGGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTGCAGTTCTG
AAGATCTTCCGAGAGATGTGGATATTGGAGTTATTTATAATATCCATGGC
GCAAGGAATGGTTCAAAGTTTTATAATAGGCGACATGACAAAGGTACGGT
TGTTTTAGACTGGtgcgccagtcgggctggaactgtatcacgcgggaaaa
gtgagcgtaggagttaggtaagcgtagga

Coding sequence (CDS) from alignment at sc0000126_pilon:737220..740048+

>MSTRG.14856.1.p1 ID=MSTRG.14856.1.p1|Name=MSTRG.14856.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2664bp|location=Sequence derived from alignment at sc0000126_pilon:737220..740048+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACGACTGAGGAAAAACTTTCATGGTATCAAAAAAGCAACTTCTTTGT
TTATAAGAATCTTCTGGTTGTTTCATTGGCtgaattttgtaatttcttcG
CATTTAGTAGTACTCAAAGCTTACAAAGTAGCCTCAATGCTGAAAGAGGC
TTCATATCATTATGcgttttgtatgtattttgtgCAGTATGTTTGTTGTT
CTTACCGAAACTTCTGATTGCGTGTATtggattcaaattttcaatagcTC
TGGCAATTTTTGGATACACAATCTATCAAATGATTCAATTCCACCCAGCG
ACTGGCATGATGATTTTCGGAGCTATAAGTGTTGGTTTTTCAGGGTCAGT
CTTTTGGGTTGCTGTACCCTCTCCAATCACCGTTTTGGCTCGTCAACATT
CACAACACACTGGAAAAGACTTTGAAATGACCAATCAGAAGTTTTACGCA
ATGtactattttttatttcgattttccCTCGTACCCAGTAACCTGTTACT
ATCTTCTATCCTTAAGCACAatgACAGGAAGGTTAATTACCATACCAACT
CCACATTACAAATGAATTTGCAGTGTGGTATAAAAGCATGCCCAACATTA
ACCAGCACGCTGTCGCATGTCAACATAAAAGACGCCCACAGGTTATTCTG
GATTTACTTGGAAGTTGGTCTTTCAGGAGTACCAATCATTTTGCTCTTCT
TTTCAAACATCAAAGAACAAAAAGACAACCAGGAAGAAGATGTTTGGGTC
GTAGTAAAAGATAATTTGGTTGCAGTTCTGAAGATCTTCCGAGAGATGTG
GATATTGGAGTTATTTATAATATCCATGGCGCAAGGAATGGTTCAAAGTT
TTATAATAGGCGACATGACAAAGGTACGGTTGTTTTAGATGACGACTGAG
GAAAAACTTTCATGGTATCAAAAAAGCAACTTCTTTGTTTATAAGAATCT
TCTGGTTGTTTCATTGGCtgaattttgtaatttcttcGCATTTAGTAGTA
CTCAAAGCTTACAAAGTAGCCTCAATGCTGAAAGAGGCTTCATATCATTA
TGcgttttgtatgtattttgtgCAGTATGTTTGTTGTTCTTACCGAAACT
TCTGATTGCGTGTATtggattcaaattttcaatagcTCTGGCAATTTTTG
GATACACAATCTATCAAATGATTCAATTCCACCCAGCGACTGGCATGATG
ATTTTCGGAGCTATAAGTGTTGGTTTTTCAGGGTCAGTCTTTTGGGTTGC
TGTACCCTCTCCAATCACCGTTTTGGCTCGTCAACATTCACAACACACTG
GAAAAGACTTTGAAATGACCAATCAGAAGTTTTACGCAATGtactatttt
ttatttcgattttccCTCGTACCCAGTAACCTGTTACTATCTTCTATCCT
TAAGCACAatgACAGGAAGGTTAATTACCATACCAACTCCACATTACAAA
TGAATTTGCAGTGTGGTATAAAAGCATGCCCAACATTAACCAGCACGCTG
TCGCATGTCAACATAAAAGACGCCCACAGGTTATTCTGGATTTACTTGGA
AGTTGGTCTTTCAGGAGTACCAATCATTTTGCTCTTCTTTTCAAACATCA
AAGAACAAAAAGACAACCAGGAAGAAGATGTTTGGGTCGTAGTAAAAGAT
AATTTGGTTGCAGTTCTGAAGATCTTCCGAGAGATGTGGATATTGGAGTT
ATTTATAATATCCATGGCGCAAGGAATGGTTCAAAGTTTTATAATAGGCG
ACATGACAAAGGTACGGTTGTTTTAGATGACGACTGAGGAAAAACTTTCA
TGGTATCAAAAAAGCAACTTCTTTGTTTATAAGAATCTTCTGGTTGTTTC
ATTGGCtgaattttgtaatttcttcGCATTTAGTAGTACTCAAAGCTTAC
AAAGTAGCCTCAATGCTGAAAGAGGCTTCATATCATTATGcgttttgtat
gtattttgtgCAGTATGTTTGTTGTTCTTACCGAAACTTCTGATTGCGTG
TATtggattcaaattttcaatagcTCTGGCAATTTTTGGATACACAATCT
ATCAAATGATTCAATTCCACCCAGCGACTGGCATGATGATTTTCGGAGCT
ATAAGTGTTGGTTTTTCAGGGTCAGTCTTTTGGGTTGCTGTACCCTCTCC
AATCACCGTTTTGGCTCGTCAACATTCACAACACACTGGAAAAGACTTTG
AAATGACCAATCAGAAGTTTTACGCAATGtactattttttatttcgattt
tccCTCGTACCCAGTAACCTGTTACTATCTTCTATCCTTAAGCACAatgA
CAGGAAGGTTAATTACCATACCAACTCCACATTACAAATGAATTTGCAGT
GTGGTATAAAAGCATGCCCAACATTAACCAGCACGCTGTCGCATGTCAAC
ATAAAAGACGCCCACAGGTTATTCTGGATTTACTTGGAAGTTGGTCTTTC
AGGAGTACCAATCATTTTGCTCTTCTTTTCAAACATCAAAGAACAAAAAG
ACAACCAGGAAGAAGATGTTTGGGTCGTAGTAAAAGATAATTTGGTTGCA
GTTCTGAAGATCTTCCGAGAGATGTGGATATTGGAGTTATTTATAATATC
CATGGCGCAAGGAATGGTTCAAAGTTTTATAATAGGCGACATGACAAAGG
TACGGTTGTTTTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14856MSTRG.14856Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14856.1.p1MSTRG.14856.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14856.1.p1.exon1MSTRG.14856.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14856.1.p1.exon2MSTRG.14856.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14856.1.p1.exon3MSTRG.14856.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000126_pilongenomesc0000126_pilon:737220..740048 +