MSTRG.14847.3.p1 (mRNA) -

Overview


Name	MSTRG.14847.3.p1
Unique Name	MSTRG.14847.3.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000126_pilon:639192..647385+
coding sequence from alignment at sc0000126_pilon:639192..647385+

mRNA from alignment at sc0000126_pilon:639192..647385+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.14847.3.p1 ID=MSTRG.14847.3.p1|Name=MSTRG.14847.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8194bp|location=Sequence derived from alignment at sc0000126_pilon:639192..647385+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaataatcaAATCATGCCacatctatttttgggtaagttcacaacggt
aaactcatatgtaaatttcatcggccttatCAAAGCGCGCAGTAAGagcg
caattgcacggttatcaaaagGGCAGAATTTTTatacacgcttatcgaaa
ttgttctgaaacgggcggtaagcgtgaagcaagattgacgggtgacggct
tttgcggtaagcgtgcaattgcacgctttaaaatttcctatatttttgac
acgcaattccttccgaaagctctgttgaatttcaaaagcctaggcgctcg
ctagggcagttttactcaaaatttatcgtagaagaaaattccataaaaat
ggattgcccgttaaaccatgccttcgcccgaattagagaattctgaaccc
cttgaaatccctaagcaatttcaagcCGGTcgggagcgggcgtaaattat
aaccatgcaattgcgcgcttacgccctcggaacataagcgtgcaattgag
aggatttcccagactgctaaagaagggtgtcgaaattagaagacggatgt
cgacattagaccaacttacggtttGGCTTTGGGCGGCGGGAGAACTCTTG
CATGCCTAGTCTGGTCTTGGAAAGGAGGGGAATGTTACGCCGGAGCTGCG
CCAACTTAGCTGGGAAAAGTTGGAGGCAGCAGATCTCAAACCTCAAATCT
ACGCCGGAGATATCCGGGGCACAAGCTGCAATTTCCAGACTGGTCGCATG
CCAACAACGTTTTCTCCCACacgggaaaaaaattcaaccaaatctcccac
attttcaggatttattCCCGCATATCCCGCatttccgaaaattttccgac
ttcctgaaaaaataaaataattttgaaaaagcggcatggcaaaatttcct
gaatttggaaaattgggacGAAAAATTCCATGATTTCCCCAATTTCCTGA
AACAAATTTCTGATAAAATTCCTtcgatttcctgattttccgattcggaa
aaattggattagcggggaaaatttttccgacttgaAGCTCTCCCACATTT
TTGGGAGctgaagttgacagctatggctacatggctttttgcgcaatgca
tggttcttttcgcatgacgacgggcctacactgacccagagttgcccgtc
gttaggaaaattcactgtgtgtgacgtcatttttttaaaggaaaattaac
AATGTGTTGACatgatttttctcattttttatttctgacgtccgaaatta
taacaattttttatctcttttcactgctttatagttttttcgctttattt
cgctatcgtaagttggtctaatatggacatccctcgtctaattccgccAC
CGTTTTTTAgaagagaaaggaataatatgaaagttggacTTACTggttga
aaaaagatatttcctCTCTTACCAtagtctggagaccatactctgttaca
aaaatatttctatcctgtcAAAATCCtaacaacttcactgaaatacagag
tatggaattattgactcaattcaaatcacttcaaatcacaaaagaaaaaa
ccgttatcttttcaaaacaatttaaaagctcgcgccacttcttgaaacaa
tagagctgtttgacgtcatacttttgtttatcttatcataacaataaaat
attagcAAATCAAATTCcttgtataattcccggctaTACTGTGTCTATAC
AACGATGgtctatactttgatatttttttgaaaccacacagacagagaag
tcgggtctcccagctactCTTACCATCATGCaaataaaaatagtttcaac
ctttctattatttccagctttaaaaaagggtgtcagaattagacaaGGGG
TgtaacattagaccaagttatggTATTTTttctggataaagcgctaaaaa
tcaatcgaagctgaaggaaacggttaacaaatacaataatgaccggttac
tTGACCTCgagcaatatttctcagtatagccctcactaaccggtcattat
tgtattagtaaTAGCTAGCTATAAAATACAAGAAAGAATAACATGTTaaa
aaaaaCGTGGTGTGacatcttcttcatcttcttcatgTATATAAATGTTT
CTCAATTGTGACGGTTTGGTCGATGAACAACAAAATGCTTGAATAGCAAA
TGAACGAAAGTGGCATCAATAAGAATCGAACGTCTTGAAGTAATACTAAT
AGTAAATATCAACGTAATGCAATAAACAACTTTTGcagcccgtcaaagtg
catcataaatgaagaaaacgcactaaaggataccctacaatgcaggaagt
gccaccgtttagtccattatctttgtacagaactgccactttaccagatc
cagatatgcttgtcatacaaatcaagaagtttccagtgtcaaaactgtac
caaaatcgcaccacaggtaatggaaaggtataattcaaatgaatcatcaa
aaattgaaggattcaaaaacgaaatcaaagcttgtgagaatataatgaaa
aggcagggcgaagaaataaaccatttgaaagcacaagacgtcaatgttat
ggtcaacgaaatgaaagaaactatttgaaagcacaagacgtcaatgttat
ggtcaacgaaatgaaagaaactatcgacaccagaataaccacgcttgaaa
agaagattgaaagcatcatcgaaaagaaagaagagaaaagaccaccaatg
agctacgctaaaatcacatccaaacacatcgagaaaaacattggagatgc
gattcgaaaagaaaaacaggaggagcagctgattcgatctacagcacgca
acctaatttttcatgggattgatgaatcgacagatgaaactgaagaagaa
acaaaaatcgaggacgaagaatttatccatgacaaaattattggtcagcg
gctccatctgaggaatataaagattaccgagacgcagcggatcgggaaat
ttacgaaagaaagagaagataaagcgagataccgatcaattaaagtcaca
tttacgaacgaagagggcaagaacacagtgttgcaagcaataacaaaaga
aaaaggctttccttaccgagtgacagaggatttgaccaaaaatgaaagac
agataattaaagaatggtgtaaggaagccgaaaaaatgaatgctaaaatc
aaggaagacaacacaaaatggaaagtccgggggagcccgcgaaaaaaact
ctatttcaaaaagatcattgtaaaaagtacgagcggtttatagaggccca
tgtgtcttcacggtggcctgcaaacctgtaaagctttattatttattatt
attattattattattactctGTCTTGGGCGTTGGCGGAAGGATGATTTTG
AGTACTGAACTTGGATGTCTTCCTGAGCATTTAATTCAAGTAGTAACGAG
TTCATTGCTGAACAAATTTGTGGTTATATATCCTTAAGTGACTTTGTTTG
TAAATCATGGGTATATACACGAGAGACATAGGCTGGCAAACGTTCATCAA
TAAGGTTTAGCCAAAGGTAGACAGCTAAACGCAGCTAAACGTTCCGTTGT
TGGGGACATTTCCTCGTTTTGTTCGACTGGTTCACCGTCATGGAGTAGTC
CTGAATTGACTTTAAGAAGATTGTCCTCAAGATGGAGATGGGCTATAAGG
CGTTGGAATAAAGTCTCATATCGTTCACCGTCCTGTCGTttgattgatga
aattttgagaaagttgACTTCTGACTGACAAAAGGAGTAATGCTTCCGAA
TCCTTTTCCAGATCCATGGAAGGCTGGTAGAGCCTGGTAGAGCGTTTGAT
GATATCTGATCGTAAAAGCGATGGAGCGAACTGGGATATTAAACCAAGCA
TTCGTTCCAAAATAATGTTCTTTTGTGTGGCTGTTTTACGTTGAGCTTCT
TCTCCGGTATTTGGATCGTTGGTTAAGCCACGGTTGGGAGATTGCAGGTT
GTATTTGATTCGATAAATGGTGCGAACTCATTGTTCAAACTCAAATCTGG
ACAAGGTGCACTATACCTtgaaaattggcccaaaaaggtaaaaaattgct
aaaattagctgcacttGAGGAGATAAAATAGCACAACTCTGCACTTGGGG
TTAAAAAACCGTCTgcacttgcacctgaaaacctcaaatttttcaCCCGC
ACTCGACTTTTTCCGAGTTGTGCACTTGTGAGATCTCGAGCAAACGTACC
ACACTCTGCAAAATGGCAGTGTACAAAGGTTACAACATACAGTTAGTGGA
TTTAAGTACTTCGATTTGTGAAGCGTCTTTacgtcacatagaacaaaaga
aaatagcaaaagaacaaaggaattacccatagccaccatttcccaaccat
ggggaatcgcgattttacggaaatgggaatcctcatatcgaaTAGAGCAT
CTTCTGCAAATTTtattcttccccataaatgcgaaaatgaaaagcgaaga
agctttcgttttctgattgtctttttaatctgccatgaagtgttataaaa
ttccttttaGAAAAACACATTCTCCTACgaagaggcttcaaaaaatgact
tgttctcactcatttggtttccgtaataaaaaagaaagtcgttattgtga
acttGTGTGATTAAATCTTTAACCAATTCCAAGAGGAGTATTCggtggta
acgtgatcaaaaactgagctttaagttgatttttctgtttCGATATTAAC
AAAGGGAAAAGCTgacaaaatgttaaaacaataagcttcaaGACCAGGGT
TTGTATTgactactcttaggtgccaaataaacgggcccccccccgcttgt
taatttttcgatttttttccaacccccccggacgttattaggaccccccc
gtttattaatttttgaaaaaattcccagctcccaaaaggaaagtttcttg
ttttactctaaaaagcctaaatttagtccattttgacactttttagggtt
tttaaaagtccattttccaacccccccggtaattaggtcccccccgttta
tttgatttgaaaattttttccaacccccccgtttattcgaaccccccccc
cccccgtttatttggcacctaagagtatggTTACAATGCTCCTCTTTGCG
AACTACAGTTACGGCAAAAACAAACCTTTGCAgggggggTcactaaaaat
ccaaaaatgatttaaaaaaaatgattttgaaattttatagaaaacaaaaa
aaaaatttcttgagaCGGACTGGGTTTAAATATAGACCCTGGAGAAGCTG
AAACTCCTTGAAAATGAAGGCTTTTAGAAGAACTCAGGGAAAAGCAGGGG
AACTGGAAGtttctttccaaattttgaaaacttgtgGAAACTCTATGTTA
ATTACACACTTCGAGCATCTTCCAATTTTACTAAGGGAAGCATCTTGGAA
TCATCccaagattgacaagtgctatgacCTTGAAGTTTTTTACCATTTGT
AGATATGGGTAATCAAAGATGATTTGTTAAATTTTGGTTCGGCCACCTGT
CTggtttgtattttacagactagaatgaaaatttgtctaaaatcatgtat
tgactgattgactcCTTCGATATGACTGAAATTTATTCCTGAAGGATATG
AGCTTAGCTCCTTTTCCACTCAGGTTTGGTTTATATCTCTACTgaaagga
aaatttaaaaagatacgTGTCATTTTGTTCCTGAAGGTTGATTTTTCGAA
TAAAAGAGACTAGTAACAGAAAAAGATCATCCCCatgagtatttggtact
ttgcagaTCGGCTAGTAAAATACGATGACCACCTCAGAAACTCAGGAACT
ACCAAAGCTTTTGACTTGTAATTTTTACCAGTGATAGATATTGACCATCT
AagacagtgtgcaaaatttcaattttgtcatgTGATTGATGGTATTTTTT
ACccaaaatgctcactttcagcaCGACCACACTCCTTTGATTTTAACACT
TGTCAAAATCTCAAGTCAATAGCTTTTTCTATTTTGACCCTCTgcccaaa
aaatacttgtcacGGTGGATTTACtcaacaaaatttgagcaaaaaaatta
gAGTGAAAAAAGGTTAAGAGGGGGGTTctattttcagtattttcaaagaa
tgatgacgtcatcagatggCGATAACGTCATCAACGATGCGGAAATTTCC
ACCAAATATCATTACCAACTCATATTTGGTGCACACTTCACACAGTCCAT
AGtatgaatatttcaatttgctttcttttggCTCTTGGCAACAAGGGTTA
AGATTCTGTATTTTGGTGGGTTATGGATCCTTGATTCTTGAAACTGTCAT
attttgttccaaaactataTGTATATACTTCTTTACATAAAGATAAAAGA
AACGGTGTATTTCTTCTCAATCAATACTTTACGTTTCTTGTATatgcatt
catcagttgataaTATATACTTCTTTACTTTACGTCTTAACTTTGTGACA
TGATATTTAATATAAATACTTCGTCAAAATTTCGTCAGTACGATTTTCAA
AAGTACGTTCTCTTAACTAGCATACAATATTTTCATTCGACCCGCATCGA
ATCATTGCTTGTTAGTTGAAGGGAACATACGTGATCAAATGCGATGCCTG
GGTGGCTAGTTTTTGCAGAATTTTAATGATTGACctaatattatttttat
tctttcagtGACAAAGTGATATGAAATTTTTATGGTGTTGTAGATCTAAT
CAACGATTACTTTGGAGCTTATCAGCAAGACGACAATTATCCTCTGGAGA
TGTTTCGTGTTCTAATCATTACAGTATATTAAAAGTATCACCCAATGCTA
GTCAAAAGCAAATCAAAGCAGCTTACTACAAACAATCATTAGTCTTGCAT
CCTGATCGAAATTTGGATTCTGAAAATACTTCCGACACACATGCCAAATT
TTCAGAATTGAACGAAGCTTATAAAATTTTAGGCAATAATAAATGGCGGA
AAGAGTACGATCAAAAACTCAAGATACACAATCATTATAAGAAccaaaaa
agtgttttcaatTCTGATGTTATCGAAAAGGATAGTGTCAGAGGTTCTAT
ACAACAACGAAGTCAGCAATTTGACACCTGGACAAAATCACACTATCAAG
GCTCTttacaaaaaagaaaccatCGACAAAATAAAGATTCTTTGAGACAA
AATATATCAAGGgaagaatcaaagcaacaaTCGTTGAGAGTAACCATTGT
TTTATCAGTGGCTTTAATGGCTTTTGTGTTGGTGTTCTTTCCTCCGAAAA
AGAAGGACAAGTGAAGTTGAAATGCGTTCGTAAATGGTTGATGATTTTTG
TGTGAATGAAGTATGTGAttattgaatattgaatattACCACTGGTATGG
TGTCTAAAATCtatcattgggctcttccagaaaaaatccgttcatggggg
gtggagggaGGATGTATTGTCCAGGGGTCCCAAAAAAGTCCTAAAAATTA
cattgtccagggggtaaatctGCGATGTCCATGGGTAGATTTTggtgtcc
aggggggggggttaactgatgcttgtccgtggtgtaacccgttgtccggg
gggtaaatcactgaaaattgttctATCCTTCACCCCCATATTccaatttt
tctggaaaagcccaatctatAATTCTTACAAAGCCAGTACCAGAAGAGGA
CTAAGCATAATTTGACTCTCTTGGACACTATTTCTCGTGATAGTGATGAT
ACTGTAAGGTCAAGTTTCAGAGCAtttcatttcaataaaattcaataaat
tgcTTTGGAAATTAACTTGGAAACGAACTGTCAGCGATATTGCTTGTATA
AATAAATTATAGTTGATCAtatttttatatactttaaatttattttgata
cgGTAGGTTTAAGGCCTATAGTCAGGAAATCGATTTAGTTTTGAAGCATC
GGCTTTTGTTTTATTAAAGAAGTTATTGTaagaaattttccgaaaatcaa
tGTTTACTTTCCACCATTTGAATGAATTTACAAAAACTCTCGaaataagg
tcctcaaagttgaaTTTTGGGTCATGAAAGTCTTTATTTTCTtgttaatc
aaaaatatttattgtgattatcaaatttttaggtctagaaataaaacttt
gttgtCTACTTCATGctgaaattttaactttttgacataGAAATTGTGGA
AATTCttcggttgaaaatattttagctCTAATTCAGAAAACGGG

Coding sequence (CDS) from alignment at sc0000126_pilon:639192..647385+

>MSTRG.14847.3.p1 ID=MSTRG.14847.3.p1|Name=MSTRG.14847.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=594bp|location=Sequence derived from alignment at sc0000126_pilon:639192..647385+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAATTTTTATGGTGTTGTAGATCTAATCAACGATTACTTTGGAGCTT
ATCAGCAAGACGACAATTATCCTCTGGAGATGTTTCGTGTTCTAATCATT
ACAGTATATTAAAAGTATCACCCAATGCTAGTCAAAAGCAAATCAAAGCA
GCTTACTACAAACAATCATTAGTCTTGCATCCTGATCGAAATTTGGATTC
TGAAAATACTTCCGACACACATGCCAAATTTTCAGAATTGAACGAAGCTT
ATAAAATTTTAGGCAATAATAAATGGCGGAAAGAGTACGATCAAAAACTC
AAGATACACAATCATTATAAGAAccaaaaaagtgttttcaatTCTGATGT
TATCGAAAAGGATAGTGTCAGAGGTTCTATACAACAACGAAGTCAGCAAT
TTGACACCTGGACAAAATCACACTATCAAGGCTCTttacaaaaaagaaac
catCGACAAAATAAAGATTCTTTGAGACAAAATATATCAAGGgaagaatc
aaagcaacaaTCGTTGAGAGTAACCATTGTTTTATCAGTGGCTTTAATGG
CTTTTGTGTTGGTGTTCTTTCCTCCGAAAAAGAAGGACAAGTGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.14847	MSTRG.14847	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14847.3.p1	MSTRG.14847.3.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14847.3.p1.exon1	MSTRG.14847.3.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.14847.3.p1.exon2	MSTRG.14847.3.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000126_pilon	genome	sc0000126_pilon:639192..647385 +

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MSTRG.14847.3.p1 (mRNA) -