MSTRG.14716.3.p1 (mRNA) -

Overview
NameMSTRG.14716.3.p1
Unique NameMSTRG.14716.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000124_pilon:663190..669536-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14716.3.p1 ID=MSTRG.14716.3.p1|Name=MSTRG.14716.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6347bp|location=Sequence derived from alignment at sc0000124_pilon:663190..669536- (Clytia hemisphaerica_ch_hm2_pilon)
AGCAGATTGCTTTCAAGAAAGTCAGGAATTTCTGTAACAAATTTACAAAA
TACCTATCAAAACTGTGGAATTCAGTTACTGTTACCTAAAAAAATCATGG
AATTCAAATACTTTTAAATGCAAAATTAAGTAAAATTCATGGAATTCCGA
TACTTTCTCTTTAAATTTATTTCAAAAATTGATGTCATCCATTAGGGGGT
AATGCTTTTTTTCGGGAATGGCCCAATACAATGCTGATAAATTGACACAA
CACATGTGTACATGTACATTGACAAGTACTGAGATCAGGTAACTTGCATC
CTTGCATCCAGCTAACATAACAACATGCATAGCCCTTAAATGAATGACCT
GGCTGGTCATTAAAATACAAAGTTCGCGGACTCTATCATTTTTGTTTCTA
CTGATGCAAGTTACCCGCACGGTAATCCCTGAGAGAGGGGCTGTGGTATA
GTGGTCATTGACCTTGGTTGCTGCACAGGCGACTGAGGTTCGATTCCCAC
TCACAGCGGTTCACTTGGCAAGTGAATGAACCTTCGCCCGAGTAAACCCA
TGCCATGTGAGGAGAATACACCGTTTAACAGTGTCGACTGTGCACGCGTA
TGAACAATTTTCCATTGTTGGACCTACCCCGGTGGGGTGGAGTTCCTTTA
AATTAACCTTCGTTCGTCCGTTCGTCCGTCCGTCCGTTCGTCTGTTACCA
ACTTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGG
TGCAAAATTGTGGTGGCCAAAATCTGACAGAGCCCGATTTTCGAAAAAAA
AAATTTTGGGAGGTAAACTTGGGCCAAAACACGGCTAAAAAACAGGTTTG
AAATTGGATCATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCA
TCATAGGTAAAAGATGGCTCAAGCAGATTTTTGTTAATAAAAATTTTTCA
ACTCAAAAAACGCATCTTCATCTATAAGAATCACTGTTGATAAGCATACA
TCAATGTTCTTAGCCAAATTACTAAATTTTTTGATGAGATAGATGTTTTT
TTGCTCACGAAGTCTTGAATATGAAAGAATATTTCAAGAGTATGAAATTT
TGGTTTCTCAACGTTTTTTTATAAGAAATTTTAAAATTTTTAATAGATCG
TCACTATTTGTGTTCTGAATGATTGTTTAACGGTCATGCTCACGTAGATA
TCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATC
ACTTGTTTTGATTTTGGCAACCACAGGAAACTTCACTCTCCCCCGTAAAA
AATGGTAGGTAAACATCCAGTTCTCATAGGAAAACCCAGCAGAGAAATTG
TAGGTAAAGAACTCCTTTTAATCATAACTTCTTTTCCTCTAGATGAATTT
CTGTGAAATTTTCGGGAGAGATACATAAAATTGTCATTAATATCATGTTC
AAATATCTAAAACATTCTCTTTAAAGGAAAGAAAAAATTGGCAACGTTTC
CATTTCTCTAACCTTCCACAGTATTAAAGTGAGCATTTTTACCTACTGCC
TCTACGGTGGAGATGGCGAGACTGTTAAACGGTATATTGGGTAGTCAAGT
CCAAGGTGCTGACAGGGCGCTCATTGAAAGCGTCTATAGTTGCGAAAATA
GGCCTCAAAGTCTCCTGCAACTCAACCAAATAGAAATAGAGAAGTTTATA
TCAAAATCTGCAACAAAAACGAAAGTGGTCTCTTCCACTAATGAGGTTGC
CACTATTTCAAACTGCCCTTTTTTTGGCACCCGTAATCTTGATATACAAG
TTTAAGTCTATACTTTCGGAATGAAAACCAGAATATGATTCTTCAATGGG
AATCAAAACTATACAAGTGTACCTAAAAACATCAATTTGTCAGATCTAAC
AAAATTAACAACGGTACTGTCATCATTAACAACCAAGAAACAAAGCATTT
TATGTCAAGAGACTTCCCTTATCAATATTTTTTGCTGAGTCAGCAGTTTT
TCAGCATATTTACCCATCTTAAAAATGAATTATCTCGAGATTTGGACATC
GAAAGTTAACAAACCATACCATTTTTGGATACTACTAATTCAGGGTTATC
CAGCCGTGGGAATGATTTTTTCTGAAAATGCTTCTAGGAAAATGCTGACG
TCATCAGAAAACGCCCAAAACGTCTATTTTTCGCCTTAAAAATGCCATTT
CTCGGCACCAGGTGGTCGAAACTTAAAAACTAACTCCATTTTCTTTATCT
ACTTTTCAAGCTGAATCAGTTGGTAGCATCAGATATTTGATTTTCAGACT
TCGAAAAAACCGTTAGTAAAGGGGGGACCCTTGATAAATTCTATCGATTA
ACTAAAAACCGATTCACTCAAAAACTGCAGGAGATTCGAAGGGCAAATTT
AGAAATAGCACTTAGAAATATAAATTTTTGGTAATAAGAAAAAGAACATC
TGTCAAGAATCTTGATGCATTCAAACAACTTTATGTCTAAATGATTTGCA
ATACCAATAGCATCATGTCTGCTTTTAAGGCTGAATGGCTGTAATTGTTG
ATACCACCATTCAAATAGAAAAACCTATTTTGTCATAACTAAAGAGTTTT
GACATATTATTGTATGGTTCCCATGGGATTTCCTTCTCAGATATCAAATT
ATTCCCGATGAGAGCAATAATTACAAGTTCATTACAAATTTCAACCATAT
TGTTCCTCTAGCTGATAATGCCTGAGATACAGTATGAGATTTATAGTGTG
AGAGGAAAGCAATGGATAAAGTTTTGAAAATGAAATACCATGCTCACTAT
TTTGCTTTTCTCTCATTTTGAAAGGAAATAATATATTGAAAATATTTTAT
TTATTTATGAACAAATAGTATTTTCTTTAAATATGCATGAAAAGAAAAGA
ATTGGAATAGTTGGTTACGGCCATATAGGTGAGTTTTTTCAAAATGTTTT
TCCAGAAATAAAATCTTTGTTCTTTTTTTTCCTTAAAATGTAATCATTAT
ATTCTCCTCCTTAGTTGAACAACCTTCATCAGAAGCCTTTGACCTTCAAG
TGGCCGCTCATCACCTATGTATATCGGTCTCCCCTGTAACCTTTAATTGA
TATATAAAAATGATTAATTCTAAATAAATTTTATAGGTTTTACTTTTAAA
AGGCTTCTATAATTTTTCATTACTGTAAGGTCAATACATTTTTGACGAAG
TTCAAAAAAGTGAAAACTTGTGTGTTGACTTTGTGTGGAATAGATCCTTT
GACAAAATCAAACATCTTCCGAAAGAAGTTCAACTTGAAAATCTTGATGA
ATTTAGAACGAGGTGAAAATACTTTTCTTTCTGATCTATCTATTATTTTT
CGGAAGGATTAAATGAATCTTTCTAATCCTTTAAACCCAGAGGAAACGAA
ATATGCTGTCAAAACCACTTAAAAATTGGCTAAACTTTTTGATGGAAAAC
ACTTTGAAACTATTGAAAAATATATTTTAGAAACCTTCTCATTCTTGTTT
CATATTCTAATGTTTCTTCACTAGAAAGGTTGACATCATCTTAGAAGTTG
CACATATCACAACAACTCAAAAATATGGAGAACAATTTTTAGAACATGCA
AATTTTATGGTAAAATCTTCATTATTGTGAGCTTTTTTGTTTAAGATGTG
GAAGATCTTGAGCAATGTTTTAGTTTCAAAAACTCAAATCTTATAATGCC
TGTCTGATTTCTTCTGGCAGTGAATGAAATTCAATGCAATTGATTCAGAA
AAAATATGTCAACAAGAAAAACCTTTCATTCACAAATTTGACAAATTCGC
TTTCAACATGTCGAAAGATACATTGACTCTCGGTATCTCTCTTTCATCAG
ATAGGATCACCTACTGCTTTGGCTGATGAGGATCTTGAAGCCAGACTGAG
AAAGAAATCCTTAGAAACTGGTTATGGATTGTTTGTTCCTGCTGGTGCAT
TTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTCATTGAAG
GTAATCTTATAGACAAAAATAAGTCTCTAAAAAGATGAGACAATGTTTAT
TTCTATGAGGATGGATGAGCTTTTATAAAGAGTAAAAAAAGAAGTTTGAT
TTGATTTGATACACTTATTTTGTATCCAAATTCCTTTTATAAATCAAAGC
AAAATGTATTTTCGATACGCCTTCCAACTTGGTCGACTTTTTAGGGGACT
TGTAATAAATTTATGAGGAAGATTTGTTCTCAGTTAACGCCATTTTTTTA
GGCCATATCTAAATCAAACCAACAAACTCCTGCCAAGACTCAGTGATATT
TTCCCAAGTCTCAAGTGGTGTGAAGTGCAAACTATTTTTAGCATTTGAAT
TGCTTAACTATATTGATGTTACTTTATCCCTTCAATGCAAGGATATCTTA
CATTTTTCACAAGGGGACTCATACACTAATGTTTTCAATACTGTTGTTTG
GAAGAATCCTCCTCTCCTCTCCTGAAAAGCTGACCGCGCCCCTAAAGGTT
GATAGGTGTATAGCGTTTAAGGGTTAATAAATTGATGTGCCTTTTTTAGA
GTTGAGTTAAATCTTAACGTAATGTGTTTTCATTTCCAGGGTTTGAAAGT
GACAATGAAAAAACATCCATCTTGTTTCAAAGTCCTTGGCGAGGTAGCTG
AAAGGAATGAAAAGGTTGGAGATGAACCTGTGGTATTATACGAAGGTTAG
ATAGGTCTTTCTTTGGTTTTTCAAATTACATGTTTTTATTACAACTGTCT
CCACTTATAAGGTTTTCATCTTCTTCTCATGCACTATTCTATAATTTTCC
CCATCATATTAGGTGATTTCACCTTGACAAAACTACTTATTTATCTAGAC
TAGCTTAATAATCCTGAACGTATTAATTCTACAGTGAAATTAACCAAATT
TTGTACAATATTTTGCTTACAATTAGGTCCAGTTCGAAAGCTTTGTCCGT
TGGCACCTGCTAATGTAAACACGATGGCTTGTGCTGCACTAGCCGCACAT
AATCTAGGTTTTGATAAAGTTCAAGGATGTCTTGTAGCTGATCGAAGGTA
TACAGATCTTGAACGTGGATATCCAAGCTGTAAATTACTTTCTTACTTTG
ATGATTCTGCTATTTACAGCTTGGCCTAGCTAGATGCTTTTCAAACCCAT
TCTGAGATATTCTGCCCCTTCTGATATATTATCGAGTTTATGTATTCGAG
ATCATCATCATCATCCTTCGACCTAGGTCCGAATGGTCCACTAGGTCCAC
TTTATTCGAGATAAATCTAGGGGGACGGTATGAAGCAAAGTTGACATGTC
TCCAAAATCACCGTCCACTTTGCTCGACGACAGTAAAAACACCAAGATAC
CGTCGTCTATTTAGGTGAGCAAAGGCGATATAGAGTTAAATAATAGAGTT
TGCAGCCTGGATATCAAGGCTAAACAGATCATGAACGTGATTCGAATAAA
TACAATTGAATTGAGGTTTTTTGACCATTGTCTATGTTATGAAAATGAAG
AATGAGACAAGATTTATTTTTCGAAATTAAAAACAATCATCAGCAAAATA
AAATTATTGATCATAAATTTAGTGATAATTGTTCCAGTGTTTTTTTTCAG
TTTGAAATGCCACATAGTAGAGATAGAAGTGACAGGACCTCCTTTAGGTG
ATAATGGTGAAGAATTCACAGTCAAAACAGTTCGAACAAATCCCAGCAAA
ACTGGAGTTGTTACTGGTAACGCTACTTATGCATCCTTCTTCCAAAGTCT
AAGGCGTAAGTCTTTTTTTCCAAACTATTTATGTTCAATACAAAACCAAT
ACAGCTTATCTCGCCAATTCGAACTCAAATGGGAACTTTAGTTTGTTCGA
GTTAAAGAGAGATTCGAATTATAGAAAGTATTTTTACGAGAACTGAGAAT
TAGTTTGAATTGAGAACGATTCAAATAATAGAAGTTCAACTTAGCGAAAA
CCTGCTTTGTTATTTTTTGGTGTGTGTTTTTTTTTGGGGGTTTTGTATCC
AAGTTTAGGTCTAAGTATTATCACATTATTGTCGTTTTTTTTAAAGTCTG
GTTGGTGGTTTAACAAAATCTTCCAGGGAAAATTTTTCTTGAAAAGTTCA
ACAAAATCTTTGTGGGGAAATTGTTTTTGAAAGTTACAATACTTTATGAC
TTTCTTTTTAGGTGCATATGGAAAAGGTGGCGGTATCCATTTATGCTGAT
TCAGCAAAAACGAAATTCTAGAGTATTTTTATAGCTTTATTGTAGTTAGG
TAGCATAGATTTATTATAAAGTTATTATTATTTACCATTTACTTTTTTAT
ATAGGAGATTAGTTCTTTTATAAAAATCATCTAACACAAATTAAAAA

Coding sequence (CDS) from alignment at sc0000124_pilon:663190..669536-

>MSTRG.14716.3.p1 ID=MSTRG.14716.3.p1|Name=MSTRG.14716.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3438bp|location=Sequence derived from alignment at sc0000124_pilon:663190..669536- (Clytia hemisphaerica_ch_hm2_pilon)
GTGCATATGGAAAAGGTGGCGGTATCCATTTATGCTGATTTGAAATGCCA
CATAGTAGAGATAGAAGTGACAGGACCTCCTTTAGGTGATAATGGTGAAG
AATTCACAGTCAAAACAGTTCGAACAAATCCCAGCAAAACTGGAGTTGTT
ACTGGTAACGCTACTTATGCATCCTTCTTCCAAAGTCTAAGGCGTCCAGT
TCGAAAGCTTTGTCCGTTGGCACCTGCTAATGTAAACACGATGGCTTGTG
CTGCACTAGCCGCACATAATCTAGGTTTTGATAAAGTTCAAGGATGTCTT
GTAGCTGATCGAAGGGTTTGAAAGTGACAATGAAAAAACATCCATCTTGT
TTCAAAGTCCTTGGCGAGGTAGCTGAAAGGAATGAAAAGGTTGGAGATGA
ACCTGTGGTATTATACGAAGATAGGATCACCTACTGCTTTGGCTGATGAG
GATCTTGAAGCCAGACTGAGAAAGAAATCCTTAGAAACTGGTTATGGATT
GTTTGTTCCTGCTGGTGCATTTTGGGGTGGTGAAGATGTACAAAAGATGG
CTGATCAAGGGTCATTGAAGATGGTGCATATGGAAAAGGTGGCGGTATCC
ATTTATGCTGATTTGAAATGCCACATAGTAGAGATAGAAGTGACAGGACC
TCCTTTAGGTGATAATGGTGAAGAATTCACAGTCAAAACAGTTCGAACAA
ATCCCAGCAAAACTGGAGTTGTTACTGGTAACGCTACTTATGCATCCTTC
TTCCAAAGTCTAAGGCGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGC
TAATGTAAACACGATGGCTTGTGCTGCACTAGCCGCACATAATCTAGGTT
TTGATAAAGTTCAAGGATGTCTTGTAGCTGATCGAAGGGTTTGAAAGTGA
CAATGAAAAAACATCCATCTTGTTTCAAAGTCCTTGGCGAGGTAGCTGAA
AGGAATGAAAAGGTTGGAGATGAACCTGTGGTATTATACGAAGATAGGAT
CACCTACTGCTTTGGCTGATGAGGATCTTGAAGCCAGACTGAGAAAGAAA
TCCTTAGAAACTGGTTATGGATTGTTTGTTCCTGCTGGTGCATTTTGGGG
TGGTGAAGATGTACAAAAGATGGCTGATCAAGGGTCATTGAAGATGGTGC
ATATGGAAAAGGTGGCGGTATCCATTTATGCTGATTTGAAATGCCACATA
GTAGAGATAGAAGTGACAGGACCTCCTTTAGGTGATAATGGTGAAGAATT
CACAGTCAAAACAGTTCGAACAAATCCCAGCAAAACTGGAGTTGTTACTG
GTAACGCTACTTATGCATCCTTCTTCCAAAGTCTAAGGCGTCCAGTTCGA
AAGCTTTGTCCGTTGGCACCTGCTAATGTAAACACGATGGCTTGTGCTGC
ACTAGCCGCACATAATCTAGGTTTTGATAAAGTTCAAGGATGTCTTGTAG
CTGATCGAAGGGTTTGAAAGTGACAATGAAAAAACATCCATCTTGTTTCA
AAGTCCTTGGCGAGGTAGCTGAAAGGAATGAAAAGGTTGGAGATGAACCT
GTGGTATTATACGAAGATAGGATCACCTACTGCTTTGGCTGATGAGGATC
TTGAAGCCAGACTGAGAAAGAAATCCTTAGAAACTGGTTATGGATTGTTT
GTTCCTGCTGGTGCATTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGA
TCAAGGGTCATTGAAGATGGTGCATATGGAAAAGGTGGCGGTATCCATTT
ATGCTGATTTGAAATGCCACATAGTAGAGATAGAAGTGACAGGACCTCCT
TTAGGTGATAATGGTGAAGAATTCACAGTCAAAACAGTTCGAACAAATCC
CAGCAAAACTGGAGTTGTTACTGGTAACGCTACTTATGCATCCTTCTTCC
AAAGTCTAAGGCGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAAT
GTAAACACGATGGCTTGTGCTGCACTAGCCGCACATAATCTAGGTTTTGA
TAAAGTTCAAGGATGTCTTGTAGCTGATCGAAGGGTTTGAAAGTGACAAT
GAAAAAACATCCATCTTGTTTCAAAGTCCTTGGCGAGGTAGCTGAAAGGA
ATGAAAAGGTTGGAGATGAACCTGTGGTATTATACGAAGATAGGATCACC
TACTGCTTTGGCTGATGAGGATCTTGAAGCCAGACTGAGAAAGAAATCCT
TAGAAACTGGTTATGGATTGTTTGTTCCTGCTGGTGCATTTTGGGGTGGT
GAAGATGTACAAAAGATGGCTGATCAAGGGTCATTGAAGATGGTGCATAT
GGAAAAGGTGGCGGTATCCATTTATGCTGATTTGAAATGCCACATAGTAG
AGATAGAAGTGACAGGACCTCCTTTAGGTGATAATGGTGAAGAATTCACA
GTCAAAACAGTTCGAACAAATCCCAGCAAAACTGGAGTTGTTACTGGTAA
CGCTACTTATGCATCCTTCTTCCAAAGTCTAAGGCGTCCAGTTCGAAAGC
TTTGTCCGTTGGCACCTGCTAATGTAAACACGATGGCTTGTGCTGCACTA
GCCGCACATAATCTAGGTTTTGATAAAGTTCAAGGATGTCTTGTAGCTGA
TCGAAGGGTTTGAAAGTGACAATGAAAAAACATCCATCTTGTTTCAAAGT
CCTTGGCGAGGTAGCTGAAAGGAATGAAAAGGTTGGAGATGAACCTGTGG
TATTATACGAAGATAGGATCACCTACTGCTTTGGCTGATGAGGATCTTGA
AGCCAGACTGAGAAAGAAATCCTTAGAAACTGGTTATGGATTGTTTGTTC
CTGCTGGTGCATTTTGGGGTGGTGAAGATGTACAAAAGATGGCTGATCAA
GGGTCATTGAAGATGGTGCATATGGAAAAGGTGGCGGTATCCATTTATGC
TGATTTGAAATGCCACATAGTAGAGATAGAAGTGACAGGACCTCCTTTAG
GTGATAATGGTGAAGAATTCACAGTCAAAACAGTTCGAACAAATCCCAGC
AAAACTGGAGTTGTTACTGGTAACGCTACTTATGCATCCTTCTTCCAAAG
TCTAAGGCGTCCAGTTCGAAAGCTTTGTCCGTTGGCACCTGCTAATGTAA
ACACGATGGCTTGTGCTGCACTAGCCGCACATAATCTAGGTTTTGATAAA
GTTCAAGGATGTCTTGTAGCTGATCGAAGGGTTTGAAAGTGACAATGAAA
AAACATCCATCTTGTTTCAAAGTCCTTGGCGAGGTAGCTGAAAGGAATGA
AAAGGTTGGAGATGAACCTGTGGTATTATACGAAGATAGGATCACCTACT
GCTTTGGCTGATGAGGATCTTGAAGCCAGACTGAGAAAGAAATCCTTAGA
AACTGGTTATGGATTGTTTGTTCCTGCTGGTGCATTTTGGGGTGGTGAAG
ATGTACAAAAGATGGCTGATCAAGGGTCATTGAAGATG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14716MSTRG.14716Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14716.3.p1MSTRG.14716.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14716.3.p1.exon7MSTRG.14716.3.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14716.3.p1.exon6MSTRG.14716.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14716.3.p1.exon5MSTRG.14716.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14716.3.p1.exon4MSTRG.14716.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14716.3.p1.exon3MSTRG.14716.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14716.3.p1.exon2MSTRG.14716.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14716.3.p1.exon1MSTRG.14716.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000124_pilongenomesc0000124_pilon:663190..669536 -