MSTRG.14666.5.p1 (mRNA) -

Overview
NameMSTRG.14666.5.p1
Unique NameMSTRG.14666.5.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000123_pilon:948789..951896+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14666.5.p1 ID=MSTRG.14666.5.p1|Name=MSTRG.14666.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3108bp|location=Sequence derived from alignment at sc0000123_pilon:948789..951896+ (Clytia hemisphaerica_ch_hm2_pilon)
aatttgttctcgGAGTCAGCCTCATGCTCTTATACTAACATCTTCGAATA
GATAAACGTGTTAGGAAAACGGATAAGAGAGAAAAGGACACCCAGACCAT
GGGGTGTtagcttttttgtaaaaaaaggcAACAACTGATCCTGAATAACA
TTAAGACATTGTGCCTCTCCAATATCATGGCGAAATCCGAAAGTTTGACT
GAATGAGAAACAGATACAGATACAGCCCCAATACCTTGATAGAGAAacag
tttgagtaaagaaagtTAGAGTAGTAGAAAGAAATTTGAGTTGCAAAGTA
AGGGGAtaattttcttagttttttagtTATCTAGTCTAAGATATGGTTGA
ATAAGATATTGAAGAGTAGGGAGTGGGGGAGTGATTATTCAAATAGGCTG
GCATACTAAGTTGTTTCAACGTACATTCAATGTTAGATGCATGTTGTGTG
TCAGCAGGGATATGGAAACCAATATGGAAGAAGTTTACTATAGAATTTTC
CTAATAATGTTCTCAAATATGATTTTAGATGGTGTAAAGTTATCATAGAT
TGGTATTATGATTTaacaagagaaaaaaatgatttaaacttttaatttaa
tGGAATTGATGATTAATTAATTGATCATTTGATTGGCGAATATCCTGatt
ataaaataatttcttcAAGAGATAACGCAGGACTCCAGAATATGGGTAAT
GACTGCAAATTACATACAGGCCTCAATCGATACAGATGTCAAGAAAATTG
AACACAACTCAAAAGTGGTGTTGAAAAACCATGGAATTTTAGACAAGAAT
AAACTTTTATAATAGGGTTTTAGAGTAATGTATCGTCTAGTAcattaagg
gcagaaactttcgcgcttttcgcgattttgaccctttttcgcgaaagttt
ctgccaggtaagaaattaaacctgaaaaacgcgaaaaatagaatttctta
CTCTCTTACTTTTGCGAgttttttgttaccaaaaaaggtaaattttatat
gaattcgcgaaagttctatctgtgaaatttcTGCCAaaaccataattcgc
gaaacttaaataATTCGCTAAATTTTGCAACTTTTTgacttcgcgaaact
ttctgccctttaAAGTATAATTATGACTTGTGTTACGGTTTCCCCAATCC
CAAAAGTTTATTTAGCGTACAAAAAGGGGCCAAAATTTGGACTGCAATTT
GCCCTAATCTTCATCTTTGCCAACCCGTTTATCATGACCCCGTTTTATAA
TTTACTTAAGTATGTTATGAAAGTCTCACAAATATATTCgtgcaaaattt
atttttcgtgaaaatataACCCACATGGAGGGAAAACGCTATTCACATTT
TTAAAGATTCTCACCCAAATAGGTGTCATTTTGGATCTGTTCTATAAAGT
GCTTGCCAACATTTGTTCtcgttaataataataattcttTTCAAAGATAT
CCCCTAAAAGATTCTAAGATTACCCAATTGGTTATTATTCACTAAGAGTG
ATACCTTTTGACGTAAGATTCTCAATAAAGAAGGGGGCGGACCATTAACA
CAGCAGATTATAAATATGTAGTTCATCAAAATGGAATGCAACATTTTGAG
GGTGCAAGGCttttttccaaaagataactttttatcaaatcccaactttt
ttaccaaaattaaaaaaagtgtgaagactttttattgttttcttctcaat
attttctgatattttctccatttttctctAGGCTCCATTTGCGTGAAGGG
AGTGAAGACACAAGATTCGTTGACCCGCTGTAAGAAGAAGAAAGGCGACC
AAAACGGTGGTGGACCCTCAGAAAGCTTGCTACAGGAGATCAAAGAAGAA
ATGGGCGGACCAGATATGATGGATGAACCCGCCTTTAAGCCACCACCAAA
ACGAGGCCGACGACAAGCAGTTGCCGCTGAATCTTACGACCCTATGGCCG
ATGACGACAAAGACGAGAACGTCATTTTTTACACCAAGACAGACGAACAG
TTAAAATGTCTACAAGAGGCTGCGTCGAATatcattttctttaagaaatg
cGACAAAGAGCAGCGACAAGTCTTATTTAACGCCATGTTTGAAAAGAAGG
TTACTCAAGGTGAAACCATAATACGTCAAGGAGATGACGGAGATAATTTT
TACGTCATCGATAAGGGAGAATATGATATTTTCGTTAAAGACTCGAATGG
TGAAGAAAAGAAAGTCGCCTCTTTGACCGAAGGGTTTTTCGGTGAATTAG
CTCTTCTATACAACTGTCCACGAAATGCAACGATTGTCTCCGCGTCCGAC
TATGGAGTCCTGTGGGGCCTGGATCAGAAAACCTTCCGACAGGTAGTAGT
CAAGGCAACCGCTCGTAAAAGAGCTGTTTTCGAAGAGCTGCTAAAAGGAG
TCTCAATGCTGGATTCTTTACAAGGGGATGAACTGATGAATTTAACTGAT
GCTCTTGATGAGGTATCGTACGCTCAAGAGCAAGAAATCATCCGCGAAGG
CGACGCGGCTTCGgagatgtattttataatgcaagGAAAAGCAGTGGTTC
GAGCAATGgataaaaacacaaaatcacaaaaagacATTGTTGAACTAGAC
CGTGGCCAATACTTTGGTGAACTAGCCTTGGTCCTaaaaaaaCCACGTGT
GGCATCAGTGTTTGCTATGACAGAGAATACCAAATGTGCTGTCTTAGATA
TCAACGCTTTTGAACGATTGTTGGGACCATGTGTGGATATTatgaaaaga
aatattgaaaaatacgaagaagaaagaaaaagacttgGTATAAACAGTAT
CAGTGAAAATCAAGAGAATGGAAATGTCACAAAATCAATGACCAAACTAA
AAATAAAGTAACAATATGGCAAGACTAATATGCTTCATATTTGGTACGCT
GGATCTCCTGTTGGAAATCTGAGCTGAGCTGCATCCCAATAGTTTGGTGA
GGTATATCATTTCAGTCGCGAAAATACTTGACTTGAAGATAAATGGTCAA
TTGTCGTCATAATGACTCTTAGTGGATCCTTTCTACTCATAAAGTCTGAA
ATCaacatttattttttccaataattttcaatgatgcctttattattttc
aatgtttt

Coding sequence (CDS) from alignment at sc0000123_pilon:948789..951896+

>MSTRG.14666.5.p1 ID=MSTRG.14666.5.p1|Name=MSTRG.14666.5.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2268bp|location=Sequence derived from alignment at sc0000123_pilon:948789..951896+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGCTCCATTTGCGTGAAGGGAGTGAAGACACAAGATTCGTTGACCCG
CTGTAAGAAGAAGAAAGGCGACCAAAACGGTGGTGGACCCTCAGAAAGCT
TGCTACAGGAGATCAAAGAAGAAATGGGCGGACCAGATATGATGGATGAA
CCCGCCTTTAAGCCACCACCAAAACGAGGCCGACGACAAGCAGTTGCCGC
TGAATCTTACGACCCTATGGCCGATGACGACAAAGACGAGAACGTCATTT
TTTACACCAAGACAGACGAACAGTTAAAATGTCTACAAGAGGCTGCGTCG
AATatcattttctttaagaaatgcGACAAAGAGCAGCGACAAGTCTTATT
TAACGCCATGTTTGAAAAGAAGGTTACTCAAGGTGAAACCATAATACGTC
AAGGAGATGACGGAGATAATTTTTACGTCATCGATAAGGGAGAATATGAT
ATTTTCGTTAAAGACTCGAATGGTGAAGAAAAGAAAGTCGCCTCTTTGAC
CGAAGGGTTTTTCGGTGAATTAGCTCTTCTATACAACTGTCCACGAAATG
CAACGATTGTCTCCGCGTCCGACTATGGAGTCCTGTGGGGCCTGGATCAG
AAAACCTTCCGACAGGTAGTAGTCAAGGCAACCGCTCGTAAAAGAGCTGT
TTTCGAAGAGCTGCTAAAAGGAGTCTCAATGCTGGATTCTTTACAAGGGG
ATGAACTGATGAATTTAACTGATGCTCTTGATGAGGTATCGTACGCTCAA
GAGCAAGAAATCATCCGCGAAGGCGACGCGGCTTCGgagatgtattttat
aatgcaagGAAAAGCAGTGGTTCGAGCAATGgataaaaacacaaaatcac
aaaaagacATTGTTGAACTAGACCGTGGCCAATACTTTGGTGAACTAGCC
TTGGTCCTaaaaaaaCCACGTGTGGCATCAGTGTTTGCTATGACAGAGAA
TACCAAATGTGCTGTCTTAGATATCAACGCTTTTGAACGATTGTTGGGAC
CATGTGTGGATATTatgaaaagaaatattgaaaaatacgaagaagaaaga
aaaagacttgGTATAAACAGTATCAGTGAAAATCAAGAGAATGGAAATGT
CACAAAATCAATGACCAAACTAAAAATAAAGTAAATGGGCTCCATTTGCG
TGAAGGGAGTGAAGACACAAGATTCGTTGACCCGCTGTAAGAAGAAGAAA
GGCGACCAAAACGGTGGTGGACCCTCAGAAAGCTTGCTACAGGAGATCAA
AGAAGAAATGGGCGGACCAGATATGATGGATGAACCCGCCTTTAAGCCAC
CACCAAAACGAGGCCGACGACAAGCAGTTGCCGCTGAATCTTACGACCCT
ATGGCCGATGACGACAAAGACGAGAACGTCATTTTTTACACCAAGACAGA
CGAACAGTTAAAATGTCTACAAGAGGCTGCGTCGAATatcattttcttta
agaaatgcGACAAAGAGCAGCGACAAGTCTTATTTAACGCCATGTTTGAA
AAGAAGGTTACTCAAGGTGAAACCATAATACGTCAAGGAGATGACGGAGA
TAATTTTTACGTCATCGATAAGGGAGAATATGATATTTTCGTTAAAGACT
CGAATGGTGAAGAAAAGAAAGTCGCCTCTTTGACCGAAGGGTTTTTCGGT
GAATTAGCTCTTCTATACAACTGTCCACGAAATGCAACGATTGTCTCCGC
GTCCGACTATGGAGTCCTGTGGGGCCTGGATCAGAAAACCTTCCGACAGG
TAGTAGTCAAGGCAACCGCTCGTAAAAGAGCTGTTTTCGAAGAGCTGCTA
AAAGGAGTCTCAATGCTGGATTCTTTACAAGGGGATGAACTGATGAATTT
AACTGATGCTCTTGATGAGGTATCGTACGCTCAAGAGCAAGAAATCATCC
GCGAAGGCGACGCGGCTTCGgagatgtattttataatgcaagGAAAAGCA
GTGGTTCGAGCAATGgataaaaacacaaaatcacaaaaagacATTGTTGA
ACTAGACCGTGGCCAATACTTTGGTGAACTAGCCTTGGTCCTaaaaaaaC
CACGTGTGGCATCAGTGTTTGCTATGACAGAGAATACCAAATGTGCTGTC
TTAGATATCAACGCTTTTGAACGATTGTTGGGACCATGTGTGGATATTat
gaaaagaaatattgaaaaatacgaagaagaaagaaaaagacttgGTATAA
ACAGTATCAGTGAAAATCAAGAGAATGGAAATGTCACAAAATCAATGACC
AAACTAAAAATAAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14666MSTRG.14666Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14666.5.p1.exon1MSTRG.14666.5.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14666.5.p1.exon2MSTRG.14666.5.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14666.5.p1MSTRG.14666.5.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000123_pilongenomesc0000123_pilon:948789..951896 +