MSTRG.14636.3.p1 (mRNA) -

Overview
NameMSTRG.14636.3.p1
Unique NameMSTRG.14636.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000123_pilon:486348..490232-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14636.3.p1 ID=MSTRG.14636.3.p1|Name=MSTRG.14636.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3885bp|location=Sequence derived from alignment at sc0000123_pilon:486348..490232- (Clytia hemisphaerica_ch_hm2_pilon)
TCAATATTTTTAAAATGAGGTTTAGTGTTAATTGAAGAGGTGCTAGTGAT
AAATTTAATGTGTATAACTCTGAATGAAATTAGATATGATGGTGTCAATA
ACTATAACCTTTTCCTATTTACAACATAATAAAAATGATGGAAAATAAAG
TGAAAGTGTATTTTTAATTTTGCTTATCATTGTTCTAGAGTTCTTGGTTA
AACAACAACATTGTGATAAGGAAAAAGTTGAATATATAGTCATTGTCAAT
GATATTCAACCATACGTTTCAACATGATATGTATCTACACTATTGTACGT
ACCAAATATTCATTGTTGCTGCTTCTTCTTGCGCAGCACAGCCCGCAACC
AAAGTAAAGTATCGAAAAGAAACATAAGGCGGCAATCACAAATATCTTCA
TTTTGCGTCCTCGTTGGGTCTAAAAAGTGAGTCGGTCAGTCGGTCAAGTG
AGTCGGCCGGTCGGTCTAAAAAGTGAGTCGGTCGATTGGTCTAAAAAGTG
AGTCGGTCGATCGGTCTAAAAAGTGAGTCGGTCGATCGGTCTAAAAAGCG
AGTCGGTCGATCGGTCTAAAAAGCGAGTTGGTCGATCGGTCTAAAAAGTG
AGTCGGTCGATCGGTCTAAAAAGTGAGTCGGTCGATCGGTCTACAAAGTG
AGGCGGTCGGTCGGTCTACAAAGTGAGTCGGCCGGTCGGCCGGTCTGTCG
GTCGTTGAAACGAACATATTTGTGATTGCCGCCTACAAAGACTACCAAAT
TACTTGGATGTATTACCATGAAGCAAAAATATGCCACTCTCAATTTTCAA
GAGGGCTAAAGTAAATGTTTCCATTGGTCGGTCTTTGGTCTTTGTTTATT
TTGTTAAGATGGTTGGTTGCGATAAGCCCCATAATAATTTCTGAAGAACA
ACTGTACAAATCCATAGCAAAATGTTCTCTATTTAAGAAACAGGATACCA
TGACCATTAGACCATTCCCTATCCATGTACAAACGATGGCAGCAGTGACC
AGAGCAGAGAGACCAGATCAATCAATCAATATTAAGAAGCCAAAGAAAGA
AAAAGCAAAATAGCTGTTGAACTTCTTGCTATTCTATTTACTTTTACGAA
AATTACCAGTAAAGTAGAATTTCGAAAACGGAGATACGCTTCCGAACCCC
GCGACGTTTCCCGATCGGCAAGGAAAATAGAGACCCGTAGGCATGTTTTC
CGGTGCCGTGTCTAAAAATAAAACGTACTTCGCCTCAAAAAAAAAAAACT
GTACTGTTTTTCCCGCTCGGAGCTCGACATATTTTTTGGATATAAATGAT
TGAAAGGGTAGGAATCATAGAAAGGAACCCTACTTTAGAATTTATCAATA
CAAAAGCTTGTCCGTATCAAGTTAAGCTTGTAGGAAATGAAGAACTTTGA
CCAAATTACAGATAACTTCTTCACTATAACTATAAACTTTCTTTTTGCAC
AAAGCTTGATATGAAAACAAAAGCTTTAGAAGATCAGAATATGAAAAAAC
GTCCAAGAAAGAGGAAGCGCATCACCTACAGTAGCTCAAGGCGAACAAAG
AAGTCAAAAATCGAACCTCTCATAATTACCACTGAAAGTAAGTTAAAAGT
AACCAAATCTTGAGAACAGTGTTTTTAAAGATCACAAGATTATTTCATTT
TTAAGATTTTAAATGCCAGTATATATTTTACTGAAGTGAATTCTCCTCTA
TCTCAAACTTGTCCCACTCAATGAAATGGGGACATATTCTTTGATATTCT
TTTGTATGCAACTTTTTCATTTTCCCTTCTAGAATGTTGTTTCTGTTTGA
TGGGACCTGACAAAGAAAAAGGAACTTTTCTTCAAGATCAAATTTCTAAT
ATTGCTGCACATCAATTTTGCTTGGTATGTTGTATTTTCATGATTTTCCA
AATTAATAGGTAGCAACTCCAACGTGTTTTACTTATCGTGGGATTATTTT
GATCAAATTGTTCATTCCCTTTTTCTCAGATTGATTCAAATCTTATTTGG
ATGTACTGAAGCTTTGTCCTAGCTATAAGATTTAAAAATTTTGTTTTTTT
GTTTACTAGCTTTTTTCGGCTGGTCTTCCACAACTCGGAGAGGACAATGA
CAATTTTCTGAAACTCTAACTCTAACCTGCTATTTTTATAAACTTGTTTA
GAGACAAGCCTCAGTGGAGGGTTACTTCTTTCGGTGCCCTTGCTGTAATA
ATACTGTGAAAATGAAGATATCCACAGGATTGAAGTTTCTTCAAACACCA
AATGAGACACATCTGGTGACGACCAAATCTGGTAAGGTTGTGAAATATTT
TAAAGCAAAGCACTTTCACTAGAAAGACTGTTATCATAGGTTGCATATGA
ATTTCCTACCTAATCTCCTAATCATTTTGTGTTTTCAGTGAATTTATGAC
TATTCTAAACAAACACAAGAGGAATTTTGAAACTTTTTATTGAAAGTCTT
ATTCTTTATTTCCAGTACTTGCTCCAGTAAGAAAATCTGCACGGAAAAGC
CCTCTTAAATCCCTCATTCAAGTTCAGCCCAAAAAACTTGGCGTCAACAC
AAATTACATGTTTCGTGATCGAGGAGAGAATATGTGGCTTGAATCCCAAT
CTGACTTGAGGGAGATCAACTCGACAACTTCAAAAACAAACAATGAAAAT
AGAACTCATAAAGTAATATCAAACGAAGATGGTGATTGTCACAGCGTCAT
TGATCCAAATAACAATCAATTTGTGAACAAAAATCTTGAAAAAGAGGAAT
TGGATAACGAGTCACCCAAAGGCAGTACAGCTGATACCCAAGACAGGGAG
AATATTGTGGAATCTTTGAAACAAACCGGTATGAATACCAAAAGAAAGCC
AGCCAAACTAGTTAGTAAAGTAGTTATTGCCTTCGTCCAAGTTTATCCTT
CAATTTAACAATTTTTTTTACTAAAGAAGAAACAGAATATTGTTTTAGAT
CTGTTTTGTGCTTGGTTCCATTTCAATTTGCATCCAGGGCTTGAAATAAC
GGTCAATCAGACATAATATGATATAAATTGCACTTTGTCTGACCCAAAAA
TCATTAATTTCAAGCAATTGAAAGACCAGACTCACTTGAAATTTTTATTT
CGAGCAATTAGTGCAGTATGGAAATGAAGTTAATGCATGGTCGTCCATAT
TCTTTTTAGTGTAAAGTTTTCTTTAAATTCTCATACTTTTAGAGTTGTCA
AGGTGGTCGATTGAATGAGGAGGTGATTAGTTACTTCAAGCGTGTTAACA
AAAAAGATTGGGGTTATTTATCATCCCTATCATATTCTGCATTTTCCTCG
TTTGGGCTTGGAGAGCTGTAGTATCTCACTTACAGGAAAGGAGAAATGGC
AATTGTGGGACAGATTGCAATGACAATGAGCTTCAATTGCCGTTGAATCT
GGTCGATAGATGTGGTTTCAAACAATTTCATTGAAGGAAGATCTGGAGGT
ATTGCTTCAACCGTCGGTGATTTGTAAACGATCTTGTCCATGGATTGAAA
TTTATGGAATCCATTGAATCTTCATCTTTATTCATCGTTGAATGGACTTG
ATATATGGTCGGATAGTTTCAATAGGGTTGAATGTTTATATGAAATCAAT
CCATTGTTTGTTTCTCATGGTTTAGTGTTGTCGACGCAATTGCTTCCTTT
GGGCTCTATATGAAAACAGTTGATATGCTACCAATATTTTTCATCGTTCA
GTTTGAATGTCTGTTTTAGAAACAACACTTTATATTAAATAGGTGCGGTT
GGAGGACTTGAAAAGTTTTTTCTCGGTGCACCTCATTTTAAGCTGCTTCC
GTAACAAGGCGAATTTCGGCACAAAGTTTTATTCCGTACGAGAGGCATCT
CCCTGAGTTCCTCTGATGGAGTGAGAACTATAAAG

Coding sequence (CDS) from alignment at sc0000123_pilon:486348..490232-

>MSTRG.14636.3.p1 ID=MSTRG.14636.3.p1|Name=MSTRG.14636.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5400bp|location=Sequence derived from alignment at sc0000123_pilon:486348..490232- (Clytia hemisphaerica_ch_hm2_pilon)
AGTTGTCAAGGTGGTCGATTGAATGAGGAGGTGATTAGTTACTTCAAGCG
TGTTAACAAAAAAGATTGGGGTTATTTATCATCCCTATCATATTCTGCAT
TTTCCTCGTTTGGGCTTGGAGAGCTGTAGTACTTGCTCCAGTAAGAAAAT
CTGCACGGAAAAGCCCTCTTAAATCCCTCATTCAAGTTCAGCCCAAAAAA
CTTGGCGTCAACACAAATTACATGTTTCGTGATCGAGGAGAGAATATGTG
GCTTGAATCCCAATCTGACTTGAGGGAGATCAACTCGACAACTTCAAAAA
CAAACAATGAAAATAGAACTCATAAAGTAATATCAAACGAAGATGGTGAT
TGTCACAGCGTCATTGATCCAAATAACAATCAATTTGTGAACAAAAATCT
TGAAAAAGAGGAATTGGATAACGAGTCACCCAAAGGCAGTACAGCTGATA
CCCAAGACAGGGAGAATATTGTGGAATCTTTGAAACAAACCGGTATGAAT
ACCAAAAGAAAGCCAGCCAAACTAAGACAAGCCTCAGTGGAGGGTTACTT
CTTTCGGTGCCCTTGCTGTAATAATACTGTGAAAATGAAGATATCCACAG
GATTGAAGTTTCTTCAAACACCAAATGAGACACATCTGGTGACGACCAAA
TCTGAATGTTGTTTCTGTTTGATGGGACCTGACAAAGAAAAAGGAACTTT
TCTTCAAGATCAAATTTCTAATATTGCTGCACATCAATTTTGCTTGCTTG
ATATGAAAACAAAAGCTTTAGAAGATCAGAATATGAAAAAACGTCCAAGA
AAGAGGAAGCGCATCACCTACAGTAGCTCAAGGCGAACAAAGAAGTCAAA
AATCGAACCTCTCATAATTACCACTGAAAATGATATGTATCTACACTATT
AGTTGTCAAGGTGGTCGATTGAATGAGGAGGTGATTAGTTACTTCAAGCG
TGTTAACAAAAAAGATTGGGGTTATTTATCATCCCTATCATATTCTGCAT
TTTCCTCGTTTGGGCTTGGAGAGCTGTAGTACTTGCTCCAGTAAGAAAAT
CTGCACGGAAAAGCCCTCTTAAATCCCTCATTCAAGTTCAGCCCAAAAAA
CTTGGCGTCAACACAAATTACATGTTTCGTGATCGAGGAGAGAATATGTG
GCTTGAATCCCAATCTGACTTGAGGGAGATCAACTCGACAACTTCAAAAA
CAAACAATGAAAATAGAACTCATAAAGTAATATCAAACGAAGATGGTGAT
TGTCACAGCGTCATTGATCCAAATAACAATCAATTTGTGAACAAAAATCT
TGAAAAAGAGGAATTGGATAACGAGTCACCCAAAGGCAGTACAGCTGATA
CCCAAGACAGGGAGAATATTGTGGAATCTTTGAAACAAACCGGTATGAAT
ACCAAAAGAAAGCCAGCCAAACTAAGACAAGCCTCAGTGGAGGGTTACTT
CTTTCGGTGCCCTTGCTGTAATAATACTGTGAAAATGAAGATATCCACAG
GATTGAAGTTTCTTCAAACACCAAATGAGACACATCTGGTGACGACCAAA
TCTGAATGTTGTTTCTGTTTGATGGGACCTGACAAAGAAAAAGGAACTTT
TCTTCAAGATCAAATTTCTAATATTGCTGCACATCAATTTTGCTTGCTTG
ATATGAAAACAAAAGCTTTAGAAGATCAGAATATGAAAAAACGTCCAAGA
AAGAGGAAGCGCATCACCTACAGTAGCTCAAGGCGAACAAAGAAGTCAAA
AATCGAACCTCTCATAATTACCACTGAAAATGATATGTATCTACACTATT
AGTTGTCAAGGTGGTCGATTGAATGAGGAGGTGATTAGTTACTTCAAGCG
TGTTAACAAAAAAGATTGGGGTTATTTATCATCCCTATCATATTCTGCAT
TTTCCTCGTTTGGGCTTGGAGAGCTGTAGTACTTGCTCCAGTAAGAAAAT
CTGCACGGAAAAGCCCTCTTAAATCCCTCATTCAAGTTCAGCCCAAAAAA
CTTGGCGTCAACACAAATTACATGTTTCGTGATCGAGGAGAGAATATGTG
GCTTGAATCCCAATCTGACTTGAGGGAGATCAACTCGACAACTTCAAAAA
CAAACAATGAAAATAGAACTCATAAAGTAATATCAAACGAAGATGGTGAT
TGTCACAGCGTCATTGATCCAAATAACAATCAATTTGTGAACAAAAATCT
TGAAAAAGAGGAATTGGATAACGAGTCACCCAAAGGCAGTACAGCTGATA
CCCAAGACAGGGAGAATATTGTGGAATCTTTGAAACAAACCGGTATGAAT
ACCAAAAGAAAGCCAGCCAAACTAAGACAAGCCTCAGTGGAGGGTTACTT
CTTTCGGTGCCCTTGCTGTAATAATACTGTGAAAATGAAGATATCCACAG
GATTGAAGTTTCTTCAAACACCAAATGAGACACATCTGGTGACGACCAAA
TCTGAATGTTGTTTCTGTTTGATGGGACCTGACAAAGAAAAAGGAACTTT
TCTTCAAGATCAAATTTCTAATATTGCTGCACATCAATTTTGCTTGCTTG
ATATGAAAACAAAAGCTTTAGAAGATCAGAATATGAAAAAACGTCCAAGA
AAGAGGAAGCGCATCACCTACAGTAGCTCAAGGCGAACAAAGAAGTCAAA
AATCGAACCTCTCATAATTACCACTGAAAATGATATGTATCTACACTATT
AGTTGTCAAGGTGGTCGATTGAATGAGGAGGTGATTAGTTACTTCAAGCG
TGTTAACAAAAAAGATTGGGGTTATTTATCATCCCTATCATATTCTGCAT
TTTCCTCGTTTGGGCTTGGAGAGCTGTAGTACTTGCTCCAGTAAGAAAAT
CTGCACGGAAAAGCCCTCTTAAATCCCTCATTCAAGTTCAGCCCAAAAAA
CTTGGCGTCAACACAAATTACATGTTTCGTGATCGAGGAGAGAATATGTG
GCTTGAATCCCAATCTGACTTGAGGGAGATCAACTCGACAACTTCAAAAA
CAAACAATGAAAATAGAACTCATAAAGTAATATCAAACGAAGATGGTGAT
TGTCACAGCGTCATTGATCCAAATAACAATCAATTTGTGAACAAAAATCT
TGAAAAAGAGGAATTGGATAACGAGTCACCCAAAGGCAGTACAGCTGATA
CCCAAGACAGGGAGAATATTGTGGAATCTTTGAAACAAACCGGTATGAAT
ACCAAAAGAAAGCCAGCCAAACTAAGACAAGCCTCAGTGGAGGGTTACTT
CTTTCGGTGCCCTTGCTGTAATAATACTGTGAAAATGAAGATATCCACAG
GATTGAAGTTTCTTCAAACACCAAATGAGACACATCTGGTGACGACCAAA
TCTGAATGTTGTTTCTGTTTGATGGGACCTGACAAAGAAAAAGGAACTTT
TCTTCAAGATCAAATTTCTAATATTGCTGCACATCAATTTTGCTTGCTTG
ATATGAAAACAAAAGCTTTAGAAGATCAGAATATGAAAAAACGTCCAAGA
AAGAGGAAGCGCATCACCTACAGTAGCTCAAGGCGAACAAAGAAGTCAAA
AATCGAACCTCTCATAATTACCACTGAAAATGATATGTATCTACACTATT
AGTTGTCAAGGTGGTCGATTGAATGAGGAGGTGATTAGTTACTTCAAGCG
TGTTAACAAAAAAGATTGGGGTTATTTATCATCCCTATCATATTCTGCAT
TTTCCTCGTTTGGGCTTGGAGAGCTGTAGTACTTGCTCCAGTAAGAAAAT
CTGCACGGAAAAGCCCTCTTAAATCCCTCATTCAAGTTCAGCCCAAAAAA
CTTGGCGTCAACACAAATTACATGTTTCGTGATCGAGGAGAGAATATGTG
GCTTGAATCCCAATCTGACTTGAGGGAGATCAACTCGACAACTTCAAAAA
CAAACAATGAAAATAGAACTCATAAAGTAATATCAAACGAAGATGGTGAT
TGTCACAGCGTCATTGATCCAAATAACAATCAATTTGTGAACAAAAATCT
TGAAAAAGAGGAATTGGATAACGAGTCACCCAAAGGCAGTACAGCTGATA
CCCAAGACAGGGAGAATATTGTGGAATCTTTGAAACAAACCGGTATGAAT
ACCAAAAGAAAGCCAGCCAAACTAAGACAAGCCTCAGTGGAGGGTTACTT
CTTTCGGTGCCCTTGCTGTAATAATACTGTGAAAATGAAGATATCCACAG
GATTGAAGTTTCTTCAAACACCAAATGAGACACATCTGGTGACGACCAAA
TCTGAATGTTGTTTCTGTTTGATGGGACCTGACAAAGAAAAAGGAACTTT
TCTTCAAGATCAAATTTCTAATATTGCTGCACATCAATTTTGCTTGCTTG
ATATGAAAACAAAAGCTTTAGAAGATCAGAATATGAAAAAACGTCCAAGA
AAGAGGAAGCGCATCACCTACAGTAGCTCAAGGCGAACAAAGAAGTCAAA
AATCGAACCTCTCATAATTACCACTGAAAATGATATGTATCTACACTATT
AGTTGTCAAGGTGGTCGATTGAATGAGGAGGTGATTAGTTACTTCAAGCG
TGTTAACAAAAAAGATTGGGGTTATTTATCATCCCTATCATATTCTGCAT
TTTCCTCGTTTGGGCTTGGAGAGCTGTAGTACTTGCTCCAGTAAGAAAAT
CTGCACGGAAAAGCCCTCTTAAATCCCTCATTCAAGTTCAGCCCAAAAAA
CTTGGCGTCAACACAAATTACATGTTTCGTGATCGAGGAGAGAATATGTG
GCTTGAATCCCAATCTGACTTGAGGGAGATCAACTCGACAACTTCAAAAA
CAAACAATGAAAATAGAACTCATAAAGTAATATCAAACGAAGATGGTGAT
TGTCACAGCGTCATTGATCCAAATAACAATCAATTTGTGAACAAAAATCT
TGAAAAAGAGGAATTGGATAACGAGTCACCCAAAGGCAGTACAGCTGATA
CCCAAGACAGGGAGAATATTGTGGAATCTTTGAAACAAACCGGTATGAAT
ACCAAAAGAAAGCCAGCCAAACTAAGACAAGCCTCAGTGGAGGGTTACTT
CTTTCGGTGCCCTTGCTGTAATAATACTGTGAAAATGAAGATATCCACAG
GATTGAAGTTTCTTCAAACACCAAATGAGACACATCTGGTGACGACCAAA
TCTGAATGTTGTTTCTGTTTGATGGGACCTGACAAAGAAAAAGGAACTTT
TCTTCAAGATCAAATTTCTAATATTGCTGCACATCAATTTTGCTTGCTTG
ATATGAAAACAAAAGCTTTAGAAGATCAGAATATGAAAAAACGTCCAAGA
AAGAGGAAGCGCATCACCTACAGTAGCTCAAGGCGAACAAAGAAGTCAAA
AATCGAACCTCTCATAATTACCACTGAAAATGATATGTATCTACACTATT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14636MSTRG.14636Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14636.3.p1MSTRG.14636.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14636.3.p1.exon6MSTRG.14636.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14636.3.p1.exon5MSTRG.14636.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14636.3.p1.exon4MSTRG.14636.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14636.3.p1.exon3MSTRG.14636.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14636.3.p1.exon2MSTRG.14636.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14636.3.p1.exon1MSTRG.14636.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000123_pilongenomesc0000123_pilon:486348..490232 -