MSTRG.14580.1.p1 (mRNA) -

Overview
NameMSTRG.14580.1.p1
Unique NameMSTRG.14580.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000122_pilon:560519..562180-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14580.1.p1 ID=MSTRG.14580.1.p1|Name=MSTRG.14580.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1662bp|location=Sequence derived from alignment at sc0000122_pilon:560519..562180- (Clytia hemisphaerica_ch_hm2_pilon)
AGAACCAACTGAGATTAGCCCCGAGATTATACTTAATCTCGAGCTTCTCT
TAAAGCACAAAAAGAAGAAAAAGCGCAAGAACAAAAGCTGGAGCCAAAGA
AGGAATGCAGTAGAGGAGAAATGGGAAGAACACAGGGAAGACATATTGTC
AGCGGTGATCCTTAACAACAGTTTCGACGGCCTCTGTCAGTATTGCAAAT
TCGAGAAAATTGCTGTGAAATGTGACACCTGCTTCTGGAAAAAGCTGTGC
ATCAAATGTGATGAAAAATTACATGTGGAATACCCCATGCACAACCGTAT
TGGTATTTTTGATGGTTTCAAAAGAACGCTATCCCCATCTGAAACAGTCG
ATGAAGAAAGTGTCATTATTGACAAGTGTAGGGATTCTAATTCAATATTA
TTTGATAAAAGTCTCAGATTTCAAAGTTAATGTAACTACAAATGAATTTT
ATTTTAATATCAATTAGAATTTTTTCGCTTCTTAAATAATAGTCTAAAAT
AGTTTGAAAAGAGCAGACCTTGGAGGGACAAAAACTGACCCTAAGAGAGA
CTGAAATCAAGGAAAATAGAATTTTCATGAATTCTATTGCCTTGATTGGG
AATATTGTTATTTGAATGTTAGTTTTTTCAGGCTCACGAAATGAGACTTT
ATCTTATTTTACAATCCTTAAGAGGATTCTTGGATTTTGTGATTTGTACC
TTTTAGTGGGATTTTGTAGATCCAAAAAAGGATCCTTTTGCTTAGGTACC
TCTCGGAAGTTTGTCTCAGATCAATATTCCAACAATTATGTATTTTTTAT
AACAGATCCAACGATACCACTGATGCCCATTAATTGTCAATCATGCGATA
GCTATAATGTTGAGAGAATTCCTGGTGATTGTGTTGCTGTTGTTACTATA
GCAGGTAAAGTGTTTTAGTGAAGGTTAAAGCTAAGAGCATTTAAAATACT
AGAAACAGCTTCTTGCTGTTTCTTTACATTCTATTATTTACCATCATGAC
GCTGAATTGTTTTATTTTGTGATAAAACAATGATATGCACTGTAATAAAA
ATATTTTGAAAAATACAAAAATCTTGTAACATAACATATATTTTAGGCAA
GTATTATCTTCACCTATATTCGTTGAGATGTAAAGATTGTGATTCAACCT
CAAACCCTTTTACCTTGGAAAATGTGGTTGGGTCTGGATTTTGGCCAAGT
GCACCGACCAAATTCAGCTACCTCTTTCATGTAGAAACACTTCAATTTTG
GGACACACTCCGGAAAAACGCGCCTGGAACATCGGAAGCTGCTTTTCTAG
AAGTATTGAATACGATGACGAACCTACATGGAAGGGTATTTCACTTCTTT
TTTTTAATTTGTTAATTTGGATAAAATTGAATCTACACAATGTTAGCGAC
ATTTGTTGGCTGTATGAAAATGAAAGTTGATATTTCACCCTTAAAATAGA
ATGTCAATTAATTTGTTGTTTTTTCTCTATAGAAAACAGGGAAAATTACT
CCAGCTATTTTCTCTATGGCATTCAAGGAATGGTGCTTTTGTCAACATAA
AATACACATACTTCAGAAAAAGAAGTGGATAGAGTGTCCATCTTGCACTC
ACGTCCAACACTCTTGTCATGTCGATGGAAATTGTAAACTCTATCGTTAT
CGGAGTTCAGGG

Coding sequence (CDS) from alignment at sc0000122_pilon:560519..562180-

>MSTRG.14580.1.p1 ID=MSTRG.14580.1.p1|Name=MSTRG.14580.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3576bp|location=Sequence derived from alignment at sc0000122_pilon:560519..562180- (Clytia hemisphaerica_ch_hm2_pilon)
AAAACAGGGAAAATTACTCCAGCTATTTTCTCTATGGCATTCAAGGAATG
GTGCTTTTGTCAACATAAAATACACATACTTCAGAAAAAGAAGTGGATAG
AGTGTCCATCTTGCACTCACGTCCAACACTCTTGTCATGTCGATGGAAAT
TGTAAACTCTATCGTTATCGGAGTTCAGGGGCAAGTATTATCTTCACCTA
TATTCGTTGAGATGTAAAGATTGTGATTCAACCTCAAACCCTTTTACCTT
GGAAAATGTGGTTGGGTCTGGATTTTGGCCAAGTGCACCGACCAAATTCA
GCTACCTCTTTCATGTAGAAACACTTCAATTTTGGGACACACTCCGGAAA
AACGCGCCTGGAACATCGGAAGCTGCTTTTCTAGAAGTATTGAATACGAT
GACGAACCTACATGGAAGGATCCAACGATACCACTGATGCCCATTAATTG
TCAATCATGCGATAGCTATAATGTTGAGAGAATTCCTGGTGATTGTGTTG
CTGTTGTTACTATAGCAGGAACCAACTGAGATTAGCCCCGAGATTATACT
TAATCTCGAGCTTCTCTTAAAGCACAAAAAGAAGAAAAAGCGCAAGAACA
AAAGCTGGAGCCAAAGAAGGAATGCAGTAGAGGAGAAATGGGAAGAACAC
AGGGAAGACATATTGTCAGCGGTGATCCTTAACAACAGTTTCGACGGCCT
CTGTCAGTATTGCAAATTCGAGAAAATTGCTGTGAAATGTGACACCTGCT
TCTGGAAAAAGCTGTGCATCAAATGTGATGAAAAATTACATGTGGAATAC
CCCATGCACAACCGTATTGGTATTTTTGATGGTTTCAAAAGAACGCTATC
CCCATCTGAAACAGTCGATGAAGAAAGTGTCATTATTGACAAGTAAAACA
GGGAAAATTACTCCAGCTATTTTCTCTATGGCATTCAAGGAATGGTGCTT
TTGTCAACATAAAATACACATACTTCAGAAAAAGAAGTGGATAGAGTGTC
CATCTTGCACTCACGTCCAACACTCTTGTCATGTCGATGGAAATTGTAAA
CTCTATCGTTATCGGAGTTCAGGGGCAAGTATTATCTTCACCTATATTCG
TTGAGATGTAAAGATTGTGATTCAACCTCAAACCCTTTTACCTTGGAAAA
TGTGGTTGGGTCTGGATTTTGGCCAAGTGCACCGACCAAATTCAGCTACC
TCTTTCATGTAGAAACACTTCAATTTTGGGACACACTCCGGAAAAACGCG
CCTGGAACATCGGAAGCTGCTTTTCTAGAAGTATTGAATACGATGACGAA
CCTACATGGAAGGATCCAACGATACCACTGATGCCCATTAATTGTCAATC
ATGCGATAGCTATAATGTTGAGAGAATTCCTGGTGATTGTGTTGCTGTTG
TTACTATAGCAGGAACCAACTGAGATTAGCCCCGAGATTATACTTAATCT
CGAGCTTCTCTTAAAGCACAAAAAGAAGAAAAAGCGCAAGAACAAAAGCT
GGAGCCAAAGAAGGAATGCAGTAGAGGAGAAATGGGAAGAACACAGGGAA
GACATATTGTCAGCGGTGATCCTTAACAACAGTTTCGACGGCCTCTGTCA
GTATTGCAAATTCGAGAAAATTGCTGTGAAATGTGACACCTGCTTCTGGA
AAAAGCTGTGCATCAAATGTGATGAAAAATTACATGTGGAATACCCCATG
CACAACCGTATTGGTATTTTTGATGGTTTCAAAAGAACGCTATCCCCATC
TGAAACAGTCGATGAAGAAAGTGTCATTATTGACAAGTAAAACAGGGAAA
ATTACTCCAGCTATTTTCTCTATGGCATTCAAGGAATGGTGCTTTTGTCA
ACATAAAATACACATACTTCAGAAAAAGAAGTGGATAGAGTGTCCATCTT
GCACTCACGTCCAACACTCTTGTCATGTCGATGGAAATTGTAAACTCTAT
CGTTATCGGAGTTCAGGGGCAAGTATTATCTTCACCTATATTCGTTGAGA
TGTAAAGATTGTGATTCAACCTCAAACCCTTTTACCTTGGAAAATGTGGT
TGGGTCTGGATTTTGGCCAAGTGCACCGACCAAATTCAGCTACCTCTTTC
ATGTAGAAACACTTCAATTTTGGGACACACTCCGGAAAAACGCGCCTGGA
ACATCGGAAGCTGCTTTTCTAGAAGTATTGAATACGATGACGAACCTACA
TGGAAGGATCCAACGATACCACTGATGCCCATTAATTGTCAATCATGCGA
TAGCTATAATGTTGAGAGAATTCCTGGTGATTGTGTTGCTGTTGTTACTA
TAGCAGGAACCAACTGAGATTAGCCCCGAGATTATACTTAATCTCGAGCT
TCTCTTAAAGCACAAAAAGAAGAAAAAGCGCAAGAACAAAAGCTGGAGCC
AAAGAAGGAATGCAGTAGAGGAGAAATGGGAAGAACACAGGGAAGACATA
TTGTCAGCGGTGATCCTTAACAACAGTTTCGACGGCCTCTGTCAGTATTG
CAAATTCGAGAAAATTGCTGTGAAATGTGACACCTGCTTCTGGAAAAAGC
TGTGCATCAAATGTGATGAAAAATTACATGTGGAATACCCCATGCACAAC
CGTATTGGTATTTTTGATGGTTTCAAAAGAACGCTATCCCCATCTGAAAC
AGTCGATGAAGAAAGTGTCATTATTGACAAGTAAAACAGGGAAAATTACT
CCAGCTATTTTCTCTATGGCATTCAAGGAATGGTGCTTTTGTCAACATAA
AATACACATACTTCAGAAAAAGAAGTGGATAGAGTGTCCATCTTGCACTC
ACGTCCAACACTCTTGTCATGTCGATGGAAATTGTAAACTCTATCGTTAT
CGGAGTTCAGGGGCAAGTATTATCTTCACCTATATTCGTTGAGATGTAAA
GATTGTGATTCAACCTCAAACCCTTTTACCTTGGAAAATGTGGTTGGGTC
TGGATTTTGGCCAAGTGCACCGACCAAATTCAGCTACCTCTTTCATGTAG
AAACACTTCAATTTTGGGACACACTCCGGAAAAACGCGCCTGGAACATCG
GAAGCTGCTTTTCTAGAAGTATTGAATACGATGACGAACCTACATGGAAG
GATCCAACGATACCACTGATGCCCATTAATTGTCAATCATGCGATAGCTA
TAATGTTGAGAGAATTCCTGGTGATTGTGTTGCTGTTGTTACTATAGCAG
GAACCAACTGAGATTAGCCCCGAGATTATACTTAATCTCGAGCTTCTCTT
AAAGCACAAAAAGAAGAAAAAGCGCAAGAACAAAAGCTGGAGCCAAAGAA
GGAATGCAGTAGAGGAGAAATGGGAAGAACACAGGGAAGACATATTGTCA
GCGGTGATCCTTAACAACAGTTTCGACGGCCTCTGTCAGTATTGCAAATT
CGAGAAAATTGCTGTGAAATGTGACACCTGCTTCTGGAAAAAGCTGTGCA
TCAAATGTGATGAAAAATTACATGTGGAATACCCCATGCACAACCGTATT
GGTATTTTTGATGGTTTCAAAAGAACGCTATCCCCATCTGAAACAGTCGA
TGAAGAAAGTGTCATTATTGACAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14580MSTRG.14580Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14580.1.p1.exon4MSTRG.14580.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14580.1.p1.exon3MSTRG.14580.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14580.1.p1.exon2MSTRG.14580.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14580.1.p1.exon1MSTRG.14580.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14580.1.p1MSTRG.14580.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000122_pilongenomesc0000122_pilon:560519..562180 -