MSTRG.14458.1.p1 (mRNA) -

Overview
NameMSTRG.14458.1.p1
Unique NameMSTRG.14458.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000120_pilon:679581..683287+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14458.1.p1 ID=MSTRG.14458.1.p1|Name=MSTRG.14458.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3707bp|location=Sequence derived from alignment at sc0000120_pilon:679581..683287+ (Clytia hemisphaerica_ch_hm2_pilon)
GTCTTATTCTCTCTtagaatttataaaaatgaaaaggttATGAGAATTTA
TATAGAGAGAAAATCTTAAATGGCTTCTAAAAGAGCTAATGCAACTGCTT
CTACAAGGCTAAGGCAGGATTATATGCGCATTAAGAAAGATCCTGTTCCA
TACATAATTGGAGCAGAACCTTTGCCTTCAAATATCCTGGAATGgtaagt
tgtattttttatttatttttttggctgttttACAGTTGTCTTCagaattg
aaagccaaaatgtAATGTTTTAAGTTGCTTTTAATAGTTCTTCTTTGTAC
ATTGTACATGTCATATGATATTTATTGTGCTGGAAAGCTGGAATGGCTGC
AatgtttcattttgaatatattcAAGTTATTTTTCTGTCCAATCCAATGG
CATAAAGTGgactttgaaatgaaaataagttaaccatttttttttaattg
aatatttttacaGGATAGAGCAGACAGTTACAAATAACTGATATTACTAT
ATTGGTCCTGACTTAAAATAAACTAATAAATTTATGATGATAAATGACTC
TTTACCCCAGGCTATAAATAATGCCAAAACACACACAAATTGCCAAATTA
ACTTGAAATCATTCATGAAAAGCTGAATTTAGACTGGTAAAAAATTGTTG
ACAATTTCATTGAAgactgtttttttaatgaagttTTGGACGTGAAGcaa
aaatatagtttttttcATATTCTAATCGTATGTTAAATAAAGTAGAGTAA
AAATGGTGCTTTTAGGTTGTGAatgcaaaattatcaaaatggaCTTTATT
ATACTAGTCCTTTTAAAACGGTATTTATTTCTGAAAAAGGCATAAAAATC
GGGGCCAATAAGGGCTGGTGCGCACTGATTAGTTATATgacaaaactttt
attataaTTCTACATCTAGGCATTATGTAATCAAAGGTCCAGAGAATTCG
CTCTATGAAGGTGGGTATTACCATGGCAAATTAGtttttccaaaagattt
tcCTTTCAAACCTCCAAAGATTATGATGATGACACCAAATGGAAGATTCA
AAACACACACACGGTGAGACACGCTTTAATATTATGCAGCTAATTCTTGG
TAAAATCAGTGAGCATTCTTCTGTTACCATTTTTCAGAATACTGAAAAAC
TCTTCTCTCAAGTTGTTGGTATGGATATTTAtatccaaaaattttcatta
ctgGAAGTAACTCttttttttATCAGGTTATGTTTATCAATAAGTGACTT
TCACCCAGACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAG
GACTACTGAGTTTTATGGTATCATATTATCcgtatttaaaaattttgaga
ttaacTCTgttgtgttaatttttttcaagaatgcaaaaaaatgtatttat
ttAAACAATGTTGCTTTACTCTTAAAGGAGAGATGTTctaagattttgtt
tttttaagaaaatatgcAATGTTTATTATTCTTTTGTACACttattttag
ctcgagaaagcCCCCACACTAGGGAGTATAGAAACAACCGACTATCAGGT
AAAACTTTAGCTTCATTTATATTGCACTCCCTTTCATCTCAATGTAAATA
CCTCATTTTCTTCTCTTCAAAACAGGCTGtagtaaatattttgatgattt
ttatattttagaaaaaacaatttgCATTGAACAGTTTGGAATACAATTTG
AAAGATAAAACATTCACTGAACTTTTTCCTGATATATGCAAAGTAAGCAC
GTTTCGTTTCATTATATTACTCTGTTCCTGTCTCCTCTAGGTtatgtcat
atcttccttcgtttcgagcttaaaactcctactcttcgagtgagacctaa
aagcctggagctgtataTTATGTAGACTAGTCTCCTctaattgtttgaaa
aatattcattttgttCACACTGGTAcaggggggtcagtgtaccagagcag
aaggtggcatgtatcctggggtgggtgggtgtttgagaaaaaatttgtca
tgtactacctgtgtactataattggggtgttgggtccaaaatcgatgtta
ACAGTATGGAAACAAAAGGTTCAGAAATaattatctgctaaaatagaaat
gtaaagttgttctaattataaattgatcaagccaagtttgtccaagatca
ttcttccagacttcttggaatgaattgaaatcctaccagATTCCATTAAA
TGAAGGCTTATGTAAAcatgtaaacattcgaacatttgaattcaaaGATT
CGAACATtcgaggtgccaactctcacgcattgggtgtgagactcacacat
ttccacatggtctcacgcaatttttgaaaagtttgatttctcacgcattt
tggatttttgagaaaaatgttcctgtttttccgatttttggaaaaaagtt
ttcccgatttcccgatttttgtaaaaatgtttactcgattttctaatttt
ttccagGTAGTACCCGGTAGTAAATGGGGGAGTATAATGAggtggttttg
gtttttttccaggtactacccggtagtaaataaggggtatggggtggttt
tgggatttttccattggtgtacttcaggggtgggtgggtttcaagttttg
aaaaataccttatagtacacatacatgccgccttctagtacactgacccc
ccctgactgGTATTTTATTATAACAGAATACTAATTAGAAATATGCctta
aaaaaatttgggttattattatattaattttcactgaaattttaaggttt
tttctttAAGTGTGTATACCTTGCtttttttACTGTTTGTTAACTTTATT
CTTTGGTGACAAAAATAGGAAATCAAAGAGCTGCTGGATAATCAGAGAGA
TCAAAATGATCCCAACGAAGGGACTGCAAATAATGGGGAATTTTTATTAC
CAAAcgatttaaattctgaaaatgataattttgtaaATGGAAGTACTTTT
GCAAACATATGTGTTTTTGTTGGCTTTGCTGTGTTTGCGCTGGTCGTCAA
TTACGTCATCAAAGCTGTTACTTCTGAAGATGAATTATGAGAACAACTTG
GTTAAAAGGgttgttgtttttaaatatcttgaattttatcaaactttatt
tatttttcaaaaatcattgtttcccttaattaaaatgattttgattcaCT
AAGAATCGCAGAAAAGTGAAATGACTTTGCCATTTTCTTATTAAGTTTTA
AAATTAGCATGATACAGATTTATGTCAATTTTTGTTCACCATGTAGATTG
TTGTCTAAGAACAAGATATACAGCCATGTACCCTCTTTGACAAAACTGCA
CTAGAGGTTTACTAAATAGACCCCTAGATCAATTCAATTTAATGAAACTT
TCTGGTGTAGATGCTTCATCAAAAAGTCGAGGACTTCATGGTTGCATTTT
GTGAAATTACGCAGAAAAGTCTTTGCGAAATCGTTTTCTCTGTATGTAAT
TTATCATTCTCAACTGTAAAGATACCTTATTAATTGAGTTGGAGGGACAA
AGATTTtgtaacaattttatttttgtactgTGCTTTGTGTAGCTTTTACG
AATGGATAGtaacaaatatatatgtatttGTAAATTTGTATAATTAAAGA
ATACAATATCATGTGGTCAGATCTCTTTTTACTGGTGCTTTTAATAGTAT
TTATTAATATAAGCTGGAAATTACATTCTCTTAAAGAACAAAACAGATGA
ATTTCaa

Coding sequence (CDS) from alignment at sc0000120_pilon:679581..683287+

>MSTRG.14458.1.p1 ID=MSTRG.14458.1.p1|Name=MSTRG.14458.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4266bp|location=Sequence derived from alignment at sc0000120_pilon:679581..683287+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTAAGGCAGGA
TTATATGCGCATTAAGAAAGATCCTGTTCCATACATAATTGGAGCAGAAC
CTTTGCCTTCAAATATCCTGGAATGGCATTATGTAATCAAAGGTCCAGAG
AATTCGCTCTATGAAGGTGGGTATTACCATGGCAAATTAGtttttccaaa
agattttcCTTTCAAACCTCCAAAGATTATGATGATGACACCAAATGGAA
GATTCAAAACACACACACGGTTATGTTTATCAATAAGTGACTTTCACCCA
GACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAGGACTACT
GAGTTTTATGctcgagaaagcCCCCACACTAGGGAGTATAGAAACAACCG
ACTATCAGaaaaaacaatttgCATTGAACAGTTTGGAATACAATTTGAAA
GATAAAACATTCACTGAACTTTTTCCTGATATATGCAAAGAAATCAAAGA
GCTGCTGGATAATCAGAGAGATCAAAATGATCCCAACGAAGGGACTGCAA
ATAATGGGGAATTTTTATTACCAAAcgatttaaattctgaaaatgataat
tttgtaaATGGAAGTACTTTTGCAAACATATGTGTTTTTGTTGGCTTTGC
TGTGTTTGCGCTGGTCGTCAATTACGTCATCAAAGCTGTTACTTCTGAAG
ATGAATTATGAATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGG
CTAAGGCAGGATTATATGCGCATTAAGAAAGATCCTGTTCCATACATAAT
TGGAGCAGAACCTTTGCCTTCAAATATCCTGGAATGGCATTATGTAATCA
AAGGTCCAGAGAATTCGCTCTATGAAGGTGGGTATTACCATGGCAAATTA
GtttttccaaaagattttcCTTTCAAACCTCCAAAGATTATGATGATGAC
ACCAAATGGAAGATTCAAAACACACACACGGTTATGTTTATCAATAAGTG
ACTTTCACCCAGACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTT
ACAGGACTACTGAGTTTTATGctcgagaaagcCCCCACACTAGGGAGTAT
AGAAACAACCGACTATCAGaaaaaacaatttgCATTGAACAGTTTGGAAT
ACAATTTGAAAGATAAAACATTCACTGAACTTTTTCCTGATATATGCAAA
GAAATCAAAGAGCTGCTGGATAATCAGAGAGATCAAAATGATCCCAACGA
AGGGACTGCAAATAATGGGGAATTTTTATTACCAAAcgatttaaattctg
aaaatgataattttgtaaATGGAAGTACTTTTGCAAACATATGTGTTTTT
GTTGGCTTTGCTGTGTTTGCGCTGGTCGTCAATTACGTCATCAAAGCTGT
TACTTCTGAAGATGAATTATGAATGGCTTCTAAAAGAGCTAATGCAACTG
CTTCTACAAGGCTAAGGCAGGATTATATGCGCATTAAGAAAGATCCTGTT
CCATACATAATTGGAGCAGAACCTTTGCCTTCAAATATCCTGGAATGGCA
TTATGTAATCAAAGGTCCAGAGAATTCGCTCTATGAAGGTGGGTATTACC
ATGGCAAATTAGtttttccaaaagattttcCTTTCAAACCTCCAAAGATT
ATGATGATGACACCAAATGGAAGATTCAAAACACACACACGGTTATGTTT
ATCAATAAGTGACTTTCACCCAGACACTTGGAATCCTGCTTGGTCTGTTT
CAACGATACTTACAGGACTACTGAGTTTTATGctcgagaaagcCCCCACA
CTAGGGAGTATAGAAACAACCGACTATCAGaaaaaacaatttgCATTGAA
CAGTTTGGAATACAATTTGAAAGATAAAACATTCACTGAACTTTTTCCTG
ATATATGCAAAGAAATCAAAGAGCTGCTGGATAATCAGAGAGATCAAAAT
GATCCCAACGAAGGGACTGCAAATAATGGGGAATTTTTATTACCAAAcga
tttaaattctgaaaatgataattttgtaaATGGAAGTACTTTTGCAAACA
TATGTGTTTTTGTTGGCTTTGCTGTGTTTGCGCTGGTCGTCAATTACGTC
ATCAAAGCTGTTACTTCTGAAGATGAATTATGAATGGCTTCTAAAAGAGC
TAATGCAACTGCTTCTACAAGGCTAAGGCAGGATTATATGCGCATTAAGA
AAGATCCTGTTCCATACATAATTGGAGCAGAACCTTTGCCTTCAAATATC
CTGGAATGGCATTATGTAATCAAAGGTCCAGAGAATTCGCTCTATGAAGG
TGGGTATTACCATGGCAAATTAGtttttccaaaagattttcCTTTCAAAC
CTCCAAAGATTATGATGATGACACCAAATGGAAGATTCAAAACACACACA
CGGTTATGTTTATCAATAAGTGACTTTCACCCAGACACTTGGAATCCTGC
TTGGTCTGTTTCAACGATACTTACAGGACTACTGAGTTTTATGctcgaga
aagcCCCCACACTAGGGAGTATAGAAACAACCGACTATCAGaaaaaacaa
tttgCATTGAACAGTTTGGAATACAATTTGAAAGATAAAACATTCACTGA
ACTTTTTCCTGATATATGCAAAGAAATCAAAGAGCTGCTGGATAATCAGA
GAGATCAAAATGATCCCAACGAAGGGACTGCAAATAATGGGGAATTTTTA
TTACCAAAcgatttaaattctgaaaatgataattttgtaaATGGAAGTAC
TTTTGCAAACATATGTGTTTTTGTTGGCTTTGCTGTGTTTGCGCTGGTCG
TCAATTACGTCATCAAAGCTGTTACTTCTGAAGATGAATTATGAATGGCT
TCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTAAGGCAGGATTATAT
GCGCATTAAGAAAGATCCTGTTCCATACATAATTGGAGCAGAACCTTTGC
CTTCAAATATCCTGGAATGGCATTATGTAATCAAAGGTCCAGAGAATTCG
CTCTATGAAGGTGGGTATTACCATGGCAAATTAGtttttccaaaagattt
tcCTTTCAAACCTCCAAAGATTATGATGATGACACCAAATGGAAGATTCA
AAACACACACACGGTTATGTTTATCAATAAGTGACTTTCACCCAGACACT
TGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAGGACTACTGAGTTT
TATGctcgagaaagcCCCCACACTAGGGAGTATAGAAACAACCGACTATC
AGaaaaaacaatttgCATTGAACAGTTTGGAATACAATTTGAAAGATAAA
ACATTCACTGAACTTTTTCCTGATATATGCAAAGAAATCAAAGAGCTGCT
GGATAATCAGAGAGATCAAAATGATCCCAACGAAGGGACTGCAAATAATG
GGGAATTTTTATTACCAAAcgatttaaattctgaaaatgataattttgta
aATGGAAGTACTTTTGCAAACATATGTGTTTTTGTTGGCTTTGCTGTGTT
TGCGCTGGTCGTCAATTACGTCATCAAAGCTGTTACTTCTGAAGATGAAT
TATGAATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTAAGG
CAGGATTATATGCGCATTAAGAAAGATCCTGTTCCATACATAATTGGAGC
AGAACCTTTGCCTTCAAATATCCTGGAATGGCATTATGTAATCAAAGGTC
CAGAGAATTCGCTCTATGAAGGTGGGTATTACCATGGCAAATTAGttttt
ccaaaagattttcCTTTCAAACCTCCAAAGATTATGATGATGACACCAAA
TGGAAGATTCAAAACACACACACGGTTATGTTTATCAATAAGTGACTTTC
ACCCAGACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAGGA
CTACTGAGTTTTATGctcgagaaagcCCCCACACTAGGGAGTATAGAAAC
AACCGACTATCAGaaaaaacaatttgCATTGAACAGTTTGGAATACAATT
TGAAAGATAAAACATTCACTGAACTTTTTCCTGATATATGCAAAGAAATC
AAAGAGCTGCTGGATAATCAGAGAGATCAAAATGATCCCAACGAAGGGAC
TGCAAATAATGGGGAATTTTTATTACCAAAcgatttaaattctgaaaatg
ataattttgtaaATGGAAGTACTTTTGCAAACATATGTGTTTTTGTTGGC
TTTGCTGTGTTTGCGCTGGTCGTCAATTACGTCATCAAAGCTGTTACTTC
TGAAGATGAATTATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14458MSTRG.14458Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14458.1.p1MSTRG.14458.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14458.1.p1.exon1MSTRG.14458.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14458.1.p1.exon2MSTRG.14458.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14458.1.p1.exon3MSTRG.14458.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14458.1.p1.exon4MSTRG.14458.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14458.1.p1.exon5MSTRG.14458.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14458.1.p1.exon6MSTRG.14458.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000120_pilongenomesc0000120_pilon:679581..683287 +