MSTRG.14417.1.p1 (mRNA) -

Overview
NameMSTRG.14417.1.p1
Unique NameMSTRG.14417.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000119_pilon:1064400..1068011+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14417.1.p1 ID=MSTRG.14417.1.p1|Name=MSTRG.14417.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3612bp|location=Sequence derived from alignment at sc0000119_pilon:1064400..1068011+ (Clytia hemisphaerica_ch_hm2_pilon)
gtttaaagaataaaaaataataaacaatgGATAGATTTTATTGGTATGAT
GGTAACCTGAATGGTGGCAATGAAAGACAAGTTCACAATACAAAGAATGT
ACGGCTGTATGACGGAGATGATAAGGTTAGAAAAGAAGTTTATTTTCAGA
TTTCCTTCTTAACTTTTGAGCAGCTGAACCAAATCCCTTGTCCATATGGT
GGTACATACCCCCTGACACTTTGTTATAACCACTGCGTAAGAACTACATG
GATGctaactcaaaatttaagtttgttttttttctatttccattGATAAC
AACATTAAATCATATCACCAACGGCATCCTAATTCTATAAAAAATCTACT
ATTTCAATCTTATTTATATAAATTTACTGTAAACACCTTTatagtttttc
aaaagtttccagGAATTATCTTTAGTGTGACGGAGTGGAGGGAGGAAAGT
TTGCAATGCCtttttttCTGAAGAAGATTTTACCTTCATAAACTCAGTTG
CAGTGTTTCTTTATATTTATCTAACTTTACCTATCTTCATCATTTTGCCT
GTTGGatcttacatttttttcaagaactgttagattttacttttttttct
atttgtagACGACGTTTGATAGTGGTTTATTGACCTTAACCAATTTGAGG
ATAATTTGGAGTGATGAAGCCCAAAAGGTAAGGCTCACTTAGTAATGTAT
CATTTCATTTTAGATTTTGGAGCTGGATAttgttaaatttgaatttatct
GTAATTCTTGGTTGGGACAGCCACAGAAGAAGCCTTTTGTATTAAATTAA
TAACACAAACTAAGGTTTAGATAAAGGATAGCTGATAattctatttgttt
ttctttaacttAGGATAGGAAAATTGCATTAGAGCTGGATTTGGTGAAGA
AGATAACATCAGAATTAGGCAGCATGTTTAAAAGGTAAAACATAGAAACT
GCTTACTCTAGAGCTTTTTTACCTTACTGAAGAGATTATTGGCCTTTACT
TAAGTCTCAAATTGTTTTGGAAACTTGATGATCTTTTAATTATGATCTAA
GTAGGCTAGAAAACGTATTTCAAATTTCGTCTTAAAGGATTTTGTGTGAT
TTGTGATTTGTGTGATTATGTCTTTCATAATTGCTCTGGTTTCACCTTTA
GTGCAAAAACTTCAATCCACTTAGAAGCAGCTCCAAAGGACAAACCATCA
GGACCTAAAAGATCAAGCTCACATAATGTGGTTCGGTTCTCTTTTCGAGT
AGGCGGCCAGGAACAGGTAAAGCTCGACATGGAAATCTCCAATCCTATAC
TTATCAATAGGCTAGAGAAAGAAATTTAAGTGCCTCATAGTACCTCAAAT
CAATTCAATTCCTGAACTTGTCAATCAATTTCATTGCTAGCGCTGTCAAT
CACATTTGACTTGTCAATCAATTTTAAAGTATAATAAATGACTAAAAATG
GTGTGAATTGGAAGAAAATCAATATATCACCAAATCTACTGAAAGGCCAG
CAATATCTGCCGGTTATTCTTTTATTGGATACACAGCAGAACACTTAAAT
GATTTACTAATAAAAAGTTCGTTGAAGAGATACGAGACAATAGTTTGGCA
TTCGaggtatttttttattgcaaccTCTTTCGAAATAATTTATTCTTTTA
CTTATGTAATTCGTCGTGTGATTCCATATACTTGGcctattgattttttt
ataacattAACAAATTAGTGttattcatttcaaattttgataaaattgaa
ttgaaaggCCCATCAAAACCGAAATAATTTCGAAATAGAAAGAATTATCT
GCTAAATGAAATCACTcgcttttttcttttaataaaacagAATAAAATAT
CATGTTGTAATGATAATAAATTAAGTTCATTATGTAATGTAATTCCAAAT
AGCTTGATTGGTCttccagaagaaaaaaaaccgttCATAGAGGGTGGAAG
ATATATTTTCCAGGGGTAtcgaaaaaatcctgaaaaactgCCGATTCCAT
GGggtgaaaattcaaaatgttcaggggtagatcattgaaaaaataatata
tatcctcaaccccccccccccatgaacgaattttttctggaagagcccaa
tttaaATAAATATTCGGTACACTAAGTGAGCAACAGGTGGGTGGTCTAAC
AAGTAattcaattaaactttttgtatgATATTTCTTTCACTGTATAGTTT
ACAAAGGAGTTGAACCAAGTGATAGCATCAAAGGAATGGGAAATTCTGAA
AGCAGCATCAAACCAGTCAAAGAAAACAGCAGAGGTGATTATTTTGATCC
TCCCATCCCCTTACATGGTTGGAATGATTAATCTTCTTGTTCTTGGGTGG
TCTTTCCATCCTTGAAACCAAAAAATACTGgcttttttaaagcatttaaa
tacCTATATATCCATATAAAAGAAATTCCTCCTTACTACACCTTCCCCTC
CTGCTCTAAATACTTCATCAATAGAATCcgttcaaaaacaaaagaatgac
cCTCAAATTTATGTGGCACGTTAATTAGTTCAAATTCTATAGGAAGACAA
ACAGGCCGACTTTCCGATCTGGCCGCCTACTTGCCGCCCAACCCAAAAAT
GTACTCATCttaaaataattacttttcaCGAATAGGCTAGAAAAAGATAC
TCGTCTACAACTCCTCTCTCTGTTGTATGGGAATTATTGATATTAATCAT
TAACCACTGTAAACATTTTTCTCTTGAAAGCTGGCACCACGTCATGTAGG
TATTGGTGGCATTGAACGCAAAATGCAAGAAAAGTATGAGCAAACTGATC
AAAGTATCAACCAAGCTTTCAAAGACCTGGATGCCCTCATAGAAAAGGTA
AAAAGGAACTCTCACCTTTTATTGTCTTCTCGCATGTTCTCGTGTCTTAA
AAGTGCGCTAagcacgtcaatttttttaactaACAAACGcaaaatctcaa
agcattacaatcaaagctttatccaaaatcggcaaaaatcagtgaaaaaa
tgATTTAGAAATTCATTACATTGAAGCCAGCCTATGCCTACTTTATAAAA
GACGAATTCCAAAATTGGCGTGTGTAAAGCTCCTCAGCTGCCCCAGTGCT
GCCCGAGTGCTGCCCGAGTGCCAAACGGTTGCTTTAATGTATTTCAGAAA
AGATTACATGCTTAACTTTTAGGCTAAAGACATGGTGGTACTTGCTGAAA
AGTGTTTTCATCCAAACTGAAAGATAACAAGTTTCAATCACCGACGATGA
AGTAGGTCCTTTGGAAATCTTTTTCTCTCCACATCTTTTATATCTCCTGA
TAAGGTGTTAGAGAGAAAGATGGTAGGTGGTGGGAAATGAGGGTTTAGCA
TCATTTGtagatttttatcaattttaggtaaaaaatcaGTTCTCAGGTTA
AATTTTCTCGTGCCACAGACTTGAAACCACCTCTGTGGTTTCATAAATAC
TTGTTTGACCTCGAAGTTGTAGATTTGCACTTTCTTACTATATTTAAAAT
ATGGGGTAGGGTTTTAATAATTCTTTGAATTCgattattttaattttgtg
aCATGGTTCAACTTCCTGTTTTGTAGACAGTGGCATTCAAATCCTATTTG
TTAAGTATGGGA

Coding sequence (CDS) from alignment at sc0000119_pilon:1064400..1068011+

>MSTRG.14417.1.p1 ID=MSTRG.14417.1.p1|Name=MSTRG.14417.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4242bp|location=Sequence derived from alignment at sc0000119_pilon:1064400..1068011+ (Clytia hemisphaerica_ch_hm2_pilon)
atgGATAGATTTTATTGGTATGATGGTAACCTGAATGGTGGCAATGAAAG
ACAAGTTCACAATACAAAGAATGTACGGCTGTATGACGGAGATGATAAGA
CGACGTTTGATAGTGGTTTATTGACCTTAACCAATTTGAGGATAATTTGG
AGTGATGAAGCCCAAAAGGATAGGAAAATTGCATTAGAGCTGGATTTGGT
GAAGAAGATAACATCAGAATTAGGCAGCATGTTTAAAAGTGCAAAAACTT
CAATCCACTTAGAAGCAGCTCCAAAGGACAAACCATCAGGACCTAAAAGA
TCAAGCTCACATAATGTGGTTCGGTTCTCTTTTCGAGTAGGCGGCCAGGA
ACAGTTTACAAAGGAGTTGAACCAAGTGATAGCATCAAAGGAATGGGAAA
TTCTGAAAGCAGCATCAAACCAGTCAAAGAAAACAGCAGAGCTGGCACCA
CGTCATGTAGGTATTGGTGGCATTGAACGCAAAATGCAAGAAAAGTATGA
GCAAACTGATCAAAGTATCAACCAAGCTTTCAAAGACCTGGATGCCCTCA
TAGAAAAGGCTAAAGACATGGTGGTACTTGCTGAAAAGTGTTTTCATCCA
AACTGAatgGATAGATTTTATTGGTATGATGGTAACCTGAATGGTGGCAA
TGAAAGACAAGTTCACAATACAAAGAATGTACGGCTGTATGACGGAGATG
ATAAGACGACGTTTGATAGTGGTTTATTGACCTTAACCAATTTGAGGATA
ATTTGGAGTGATGAAGCCCAAAAGGATAGGAAAATTGCATTAGAGCTGGA
TTTGGTGAAGAAGATAACATCAGAATTAGGCAGCATGTTTAAAAGTGCAA
AAACTTCAATCCACTTAGAAGCAGCTCCAAAGGACAAACCATCAGGACCT
AAAAGATCAAGCTCACATAATGTGGTTCGGTTCTCTTTTCGAGTAGGCGG
CCAGGAACAGTTTACAAAGGAGTTGAACCAAGTGATAGCATCAAAGGAAT
GGGAAATTCTGAAAGCAGCATCAAACCAGTCAAAGAAAACAGCAGAGCTG
GCACCACGTCATGTAGGTATTGGTGGCATTGAACGCAAAATGCAAGAAAA
GTATGAGCAAACTGATCAAAGTATCAACCAAGCTTTCAAAGACCTGGATG
CCCTCATAGAAAAGGCTAAAGACATGGTGGTACTTGCTGAAAAGTGTTTT
CATCCAAACTGAatgGATAGATTTTATTGGTATGATGGTAACCTGAATGG
TGGCAATGAAAGACAAGTTCACAATACAAAGAATGTACGGCTGTATGACG
GAGATGATAAGACGACGTTTGATAGTGGTTTATTGACCTTAACCAATTTG
AGGATAATTTGGAGTGATGAAGCCCAAAAGGATAGGAAAATTGCATTAGA
GCTGGATTTGGTGAAGAAGATAACATCAGAATTAGGCAGCATGTTTAAAA
GTGCAAAAACTTCAATCCACTTAGAAGCAGCTCCAAAGGACAAACCATCA
GGACCTAAAAGATCAAGCTCACATAATGTGGTTCGGTTCTCTTTTCGAGT
AGGCGGCCAGGAACAGTTTACAAAGGAGTTGAACCAAGTGATAGCATCAA
AGGAATGGGAAATTCTGAAAGCAGCATCAAACCAGTCAAAGAAAACAGCA
GAGCTGGCACCACGTCATGTAGGTATTGGTGGCATTGAACGCAAAATGCA
AGAAAAGTATGAGCAAACTGATCAAAGTATCAACCAAGCTTTCAAAGACC
TGGATGCCCTCATAGAAAAGGCTAAAGACATGGTGGTACTTGCTGAAAAG
TGTTTTCATCCAAACTGAatgGATAGATTTTATTGGTATGATGGTAACCT
GAATGGTGGCAATGAAAGACAAGTTCACAATACAAAGAATGTACGGCTGT
ATGACGGAGATGATAAGACGACGTTTGATAGTGGTTTATTGACCTTAACC
AATTTGAGGATAATTTGGAGTGATGAAGCCCAAAAGGATAGGAAAATTGC
ATTAGAGCTGGATTTGGTGAAGAAGATAACATCAGAATTAGGCAGCATGT
TTAAAAGTGCAAAAACTTCAATCCACTTAGAAGCAGCTCCAAAGGACAAA
CCATCAGGACCTAAAAGATCAAGCTCACATAATGTGGTTCGGTTCTCTTT
TCGAGTAGGCGGCCAGGAACAGTTTACAAAGGAGTTGAACCAAGTGATAG
CATCAAAGGAATGGGAAATTCTGAAAGCAGCATCAAACCAGTCAAAGAAA
ACAGCAGAGCTGGCACCACGTCATGTAGGTATTGGTGGCATTGAACGCAA
AATGCAAGAAAAGTATGAGCAAACTGATCAAAGTATCAACCAAGCTTTCA
AAGACCTGGATGCCCTCATAGAAAAGGCTAAAGACATGGTGGTACTTGCT
GAAAAGTGTTTTCATCCAAACTGAatgGATAGATTTTATTGGTATGATGG
TAACCTGAATGGTGGCAATGAAAGACAAGTTCACAATACAAAGAATGTAC
GGCTGTATGACGGAGATGATAAGACGACGTTTGATAGTGGTTTATTGACC
TTAACCAATTTGAGGATAATTTGGAGTGATGAAGCCCAAAAGGATAGGAA
AATTGCATTAGAGCTGGATTTGGTGAAGAAGATAACATCAGAATTAGGCA
GCATGTTTAAAAGTGCAAAAACTTCAATCCACTTAGAAGCAGCTCCAAAG
GACAAACCATCAGGACCTAAAAGATCAAGCTCACATAATGTGGTTCGGTT
CTCTTTTCGAGTAGGCGGCCAGGAACAGTTTACAAAGGAGTTGAACCAAG
TGATAGCATCAAAGGAATGGGAAATTCTGAAAGCAGCATCAAACCAGTCA
AAGAAAACAGCAGAGCTGGCACCACGTCATGTAGGTATTGGTGGCATTGA
ACGCAAAATGCAAGAAAAGTATGAGCAAACTGATCAAAGTATCAACCAAG
CTTTCAAAGACCTGGATGCCCTCATAGAAAAGGCTAAAGACATGGTGGTA
CTTGCTGAAAAGTGTTTTCATCCAAACTGAatgGATAGATTTTATTGGTA
TGATGGTAACCTGAATGGTGGCAATGAAAGACAAGTTCACAATACAAAGA
ATGTACGGCTGTATGACGGAGATGATAAGACGACGTTTGATAGTGGTTTA
TTGACCTTAACCAATTTGAGGATAATTTGGAGTGATGAAGCCCAAAAGGA
TAGGAAAATTGCATTAGAGCTGGATTTGGTGAAGAAGATAACATCAGAAT
TAGGCAGCATGTTTAAAAGTGCAAAAACTTCAATCCACTTAGAAGCAGCT
CCAAAGGACAAACCATCAGGACCTAAAAGATCAAGCTCACATAATGTGGT
TCGGTTCTCTTTTCGAGTAGGCGGCCAGGAACAGTTTACAAAGGAGTTGA
ACCAAGTGATAGCATCAAAGGAATGGGAAATTCTGAAAGCAGCATCAAAC
CAGTCAAAGAAAACAGCAGAGCTGGCACCACGTCATGTAGGTATTGGTGG
CATTGAACGCAAAATGCAAGAAAAGTATGAGCAAACTGATCAAAGTATCA
ACCAAGCTTTCAAAGACCTGGATGCCCTCATAGAAAAGGCTAAAGACATG
GTGGTACTTGCTGAAAAGTGTTTTCATCCAAACTGAatgGATAGATTTTA
TTGGTATGATGGTAACCTGAATGGTGGCAATGAAAGACAAGTTCACAATA
CAAAGAATGTACGGCTGTATGACGGAGATGATAAGACGACGTTTGATAGT
GGTTTATTGACCTTAACCAATTTGAGGATAATTTGGAGTGATGAAGCCCA
AAAGGATAGGAAAATTGCATTAGAGCTGGATTTGGTGAAGAAGATAACAT
CAGAATTAGGCAGCATGTTTAAAAGTGCAAAAACTTCAATCCACTTAGAA
GCAGCTCCAAAGGACAAACCATCAGGACCTAAAAGATCAAGCTCACATAA
TGTGGTTCGGTTCTCTTTTCGAGTAGGCGGCCAGGAACAGTTTACAAAGG
AGTTGAACCAAGTGATAGCATCAAAGGAATGGGAAATTCTGAAAGCAGCA
TCAAACCAGTCAAAGAAAACAGCAGAGCTGGCACCACGTCATGTAGGTAT
TGGTGGCATTGAACGCAAAATGCAAGAAAAGTATGAGCAAACTGATCAAA
GTATCAACCAAGCTTTCAAAGACCTGGATGCCCTCATAGAAAAGGCTAAA
GACATGGTGGTACTTGCTGAAAAGTGTTTTCATCCAAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14417MSTRG.14417Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14417.1.p1MSTRG.14417.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14417.1.p1.exon1MSTRG.14417.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14417.1.p1.exon2MSTRG.14417.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14417.1.p1.exon3MSTRG.14417.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14417.1.p1.exon4MSTRG.14417.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14417.1.p1.exon5MSTRG.14417.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14417.1.p1.exon6MSTRG.14417.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14417.1.p1.exon7MSTRG.14417.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14417.1.p1.exon8MSTRG.14417.1.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119_pilongenomesc0000119_pilon:1064400..1068011 +