MSTRG.14377.1.p1 (mRNA) -

Overview
NameMSTRG.14377.1.p1
Unique NameMSTRG.14377.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000119_pilon:622983..626202-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14377.1.p1 ID=MSTRG.14377.1.p1|Name=MSTRG.14377.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3220bp|location=Sequence derived from alignment at sc0000119_pilon:622983..626202- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTATGTCTCAACCATAAATTGACAGTTTCGGTTTCGATGAAAAACGGA
TATGTAATGAGGTATAAAAAGTCTTCCTTCCATGTCAACAAGTAACTATA
AAAAGGGGATGGCTCCAAACGAAAAGAGAATCAAAAGAAATTGATCAACT
CTAGATAACGTTGAGACATCTTACTAATAACAATTTAAAAACTTTTTAAT
TGCCTTAAACTTTTAACACCACATGGAAAATATGGACCACTTTAAAACAA
TTATCTGGTTATATTGTGTCTGGTGTTCATTAACATTGGTGAAATCGAAT
GTCATTAGAGGTATTTATATTTTTCTAAGCCGTTAAATTTATTGGCTAGA
TATGGTAGTCTAGTCTAGTCTAACTTTAGCTGACCATGAGGTCTGCAACC
TTGGAGAAAGCATATTTATTTAACGATAATTTTAGCAAACTAGCATATAA
AACACGTGGTCTAGACATGATGTTTTCTCAACAAACATAAAAACTTAAAA
GCCTCGTTTTGAATCACAAGTGTCACTAATTTTAGAGAGGCTCTCCGTGG
GGGGTTCATCGAGTATCGTTTATATTTTTCAATTTTGATCATTTCTGTTT
TTTTAGTTCCAAAGAATTGTGATAAATCTTCATTTGTAAAGAGTTTTGTG
GTGACTGGTAAGTTAGCATTCAGTTCAATAGCTTTGCTAACGATATTCTG
CCCCGGGGTGGGGGGCACTGAAGGGAAGCGATCGACCGTACGGGCCTTTA
TAATTTATTAAGGGTCCCTTTTCCAAGCTTCCCTAAGTGCACGCTGTAAG
GGTCGAAATGAGCAGAGATGGAAAAGTGCACTCTAAGGGTGGAAAATCTG
GAAAATCTGACCATTTTTTACCTGAAAATGCAAATGATTAAAAATGTTCA
AGAAAATGCACTGTAAATTAAATGTCGATATTTTGCCCAAATTTATCCAT
GTTATGCTAAATCTTCTCAGTACTGTAAGGGTCCAATTTCAAAGGCCTAA
TTTTGGGCCGCGCGTACGGTCGTTTATGAATCGAGGTTCCATCCGGGGTT
TCATTAAGTTTTTTCTCATCTGCGAGTGATTCGGTGGGTAATGAAAGATT
AACCAGGAATTTGAAGGGATACAAATTAAACATTGACTATTTTTAGGCAC
TGCATTGACACATAATGCCTACAAGAATTTGAGAAACACTTGCAAAACTT
ATCAGCCAAAGTGCGAACACACCGCGGCAAAGAACTTTTGGTTGACGCTC
GCTCACAACCCTGCTCAAAAGAAGATCATTTTCATTCTTGAATTAGAGAA
TCTATTTCCGCAAGGTAATTAGTGTACTTGATCAATTGCTAATTGCAATG
TCATTTAGAAAAGGATATCTAATGAGTATGAAACGAAACAGGAATAAAAT
TCTAATGTTTCTTAGAACTTTTTTTGTAGATTGCTAAGTATTCTGGAAGA
TGTCAGCTATTTTGTCTGATATCCTATTCATTTTTCCCGAAATTTTACAC
ATGCCCTGACTCCAAACTCACCACCAAAATACTAAGCTTCGGCTAGTCCT
CTAGCGAAAAGGTTTCTTATAAGAAGTCTAAATCTGCGATTCAGGCTATA
GTCAACTCTCTCTAATTCGATAATTCGAACCTCCATTATTCGAATCTTTC
TATAATTTGAAATTAAATATTAGTATCCTCAGCTGAAAAGTGGTCTAATA
ACTCTCTGTAATTCGAACCTTTCTCTAATCTAATTCGAAGAACATTTTTT
ACCCCTTGAAGATCGAATTCGAGAGAGTTAACTTTGACAAAATACCTGCT
AATTTTTTTCTCTGCATTTTTGTTTTCAACAGAATGTTGGGGATACGTCT
TACAAATCTCACAGCTCTCATCAAAAACAGAAACCAGATACTTCAATTTC
ACAACAAATGACTCGCTACAGACAAAGAAAAATCTTTTCACAACAGTGGA
TATTTCATATGGGGAAGAATATAATTTTCAGTTCACCCCTTTACCAACAG
GGCGACCTCTTGTGATCAATGCTAGAGCTCCAAGTAAGATTTAGACATCT
AATTTCACGTAAGAATATTATCTCAAAAAGGAGAAAGATTATCTCAAAAT
ATATTAAACATTTTCAAGCACATTTTAACTCATTTTAATAGCCCTTAGCC
TTACACTTGTTCGCGATGTAAGCTTTATCAGAAACACTTTTGTCTTTTTT
AGCAATTTGCGAACTTGATGTCCTTGTTCAGATCTATGATTGTAAGTATT
CGATAAAACTAAAAAACGAAATATCATGAAAATCATGAAAATCTGTTATA
TTCTCATTTCTTTATCTAAATTTTGAAAATTGTATCATATTTTTGTTTTG
AAAATTTTGTTTGTTCGTGATTAATTGGATTTTTACCAAAGATGAAAAAT
TTATACAATTATGTCTACGAGAATTAACACACTCGTGGTATTCATCCTTC
GTCTCTCTTTGTTCTTAGTGCTACACAAATCAAAGATTTTCAAGAAATGT
TCAAAACCAGGTGAGTTTTGGGTACTGAAATGGGGGGGGGGGGCGTACGG
GGTTTGCGATTTCCGAAATACCGAATAATTCTGCCAAAATTTCCGAAATT
CCGTAAAAAAATACTTGCAATTCCGAAACCGTTTTTTTGGGTATTGTTCC
TCTTTTTGACTAATTTTTCATCAAATTTGATTTTTCATGTATGGATTCCG
AAAAAGGGGGATAAAAACTTTGTAATACCGAAATTTAGCAAAAAAGGTAG
ATTTCCGCAATTCCGAAATACCGTACGCCCCCCACTGAAATCAGCACAAA
AATCCTTATCAGCTAAATCTACTAAATTTTTGAATGAATGGTTCAAATTC
TCATGTTTCTCTAATTTTTAGGATATATGGCAAGATTGAGGATAGCTAAA
CGAATTTGTTTACTACATCCAACAGATAAAACGAAACGACGTGAATATGT
TGCAAGAAAATTGATGGAGAGAAAATGCCGGTTCGAACTAAGAACTTGAG
ATGACGTGTTCACAGGGTATTACTTAGTGAAAAACTAAATAGAAAGCAAA
AGAGAAAAGAAGGCAAAGAATCTTCAAAGAATATGTCTGATATACTCTGC
TGTGTTGGAACTCGATTCAAGATGGCCTTTCGTACTTTTAACACAGATGT
TATGTCATTATTGCTCTTGTAAATAAATATTCCTTCAAAATAGTTATATG
TTAGAAAAATAAAAACAGTA

Coding sequence (CDS) from alignment at sc0000119_pilon:622983..626202-

>MSTRG.14377.1.p1 ID=MSTRG.14377.1.p1|Name=MSTRG.14377.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5019bp|location=Sequence derived from alignment at sc0000119_pilon:622983..626202- (Clytia hemisphaerica_ch_hm2_pilon)
GATATATGGCAAGATTGAGGATAGCTAAACGAATTTGTTTACTACATCCA
ACAGATAAAACGAAACGACGTGAATATGTTGCAAGAAAATTGATGGAGAG
AAAATGCCGGTTCGAACTAAGAACTTGATGCTACACAAATCAAAGATTTT
CAAGAAATGTTCAAAACCAGCAATTTGCGAACTTGATGTCCTTGTTCAGA
TCTATGATTAATGTTGGGGATACGTCTTACAAATCTCACAGCTCTCATCA
AAAACAGAAACCAGATACTTCAATTTCACAACAAATGACTCGCTACAGAC
AAAGAAAAATCTTTTCACAACAGTGGATATTTCATATGGGGAAGAATATA
ATTTTCAGTTCACCCCTTTACCAACAGGGCGACCTCTTGTGATCAATGCT
AGAGCTCCAAGCACTGCATTGACACATAATGCCTACAAGAATTTGAGAAA
CACTTGCAAAACTTATCAGCCAAAGTGCGAACACACCGCGGCAAAGAACT
TTTGGTTGACGCTCGCTCACAACCCTGCTCAAAAGAAGATCATTTTCATT
CTTGAATTAGAGAATCTATTTCCGCAAGTTCCAAAGAATTGTGATAAATC
TTCATTTGTAAAGAGTTTTGTGGTGACTGATGGAAAATATGGACCACTTT
AAAACAATTATCTGGTTATATTGTGTCTGGTGTTCATTAACATTGGTGAA
ATCGAATGTCATTAGAGGATATATGGCAAGATTGAGGATAGCTAAACGAA
TTTGTTTACTACATCCAACAGATAAAACGAAACGACGTGAATATGTTGCA
AGAAAATTGATGGAGAGAAAATGCCGGTTCGAACTAAGAACTTGATGCTA
CACAAATCAAAGATTTTCAAGAAATGTTCAAAACCAGCAATTTGCGAACT
TGATGTCCTTGTTCAGATCTATGATTAATGTTGGGGATACGTCTTACAAA
TCTCACAGCTCTCATCAAAAACAGAAACCAGATACTTCAATTTCACAACA
AATGACTCGCTACAGACAAAGAAAAATCTTTTCACAACAGTGGATATTTC
ATATGGGGAAGAATATAATTTTCAGTTCACCCCTTTACCAACAGGGCGAC
CTCTTGTGATCAATGCTAGAGCTCCAAGCACTGCATTGACACATAATGCC
TACAAGAATTTGAGAAACACTTGCAAAACTTATCAGCCAAAGTGCGAACA
CACCGCGGCAAAGAACTTTTGGTTGACGCTCGCTCACAACCCTGCTCAAA
AGAAGATCATTTTCATTCTTGAATTAGAGAATCTATTTCCGCAAGTTCCA
AAGAATTGTGATAAATCTTCATTTGTAAAGAGTTTTGTGGTGACTGATGG
AAAATATGGACCACTTTAAAACAATTATCTGGTTATATTGTGTCTGGTGT
TCATTAACATTGGTGAAATCGAATGTCATTAGAGGATATATGGCAAGATT
GAGGATAGCTAAACGAATTTGTTTACTACATCCAACAGATAAAACGAAAC
GACGTGAATATGTTGCAAGAAAATTGATGGAGAGAAAATGCCGGTTCGAA
CTAAGAACTTGATGCTACACAAATCAAAGATTTTCAAGAAATGTTCAAAA
CCAGCAATTTGCGAACTTGATGTCCTTGTTCAGATCTATGATTAATGTTG
GGGATACGTCTTACAAATCTCACAGCTCTCATCAAAAACAGAAACCAGAT
ACTTCAATTTCACAACAAATGACTCGCTACAGACAAAGAAAAATCTTTTC
ACAACAGTGGATATTTCATATGGGGAAGAATATAATTTTCAGTTCACCCC
TTTACCAACAGGGCGACCTCTTGTGATCAATGCTAGAGCTCCAAGCACTG
CATTGACACATAATGCCTACAAGAATTTGAGAAACACTTGCAAAACTTAT
CAGCCAAAGTGCGAACACACCGCGGCAAAGAACTTTTGGTTGACGCTCGC
TCACAACCCTGCTCAAAAGAAGATCATTTTCATTCTTGAATTAGAGAATC
TATTTCCGCAAGTTCCAAAGAATTGTGATAAATCTTCATTTGTAAAGAGT
TTTGTGGTGACTGATGGAAAATATGGACCACTTTAAAACAATTATCTGGT
TATATTGTGTCTGGTGTTCATTAACATTGGTGAAATCGAATGTCATTAGA
GGATATATGGCAAGATTGAGGATAGCTAAACGAATTTGTTTACTACATCC
AACAGATAAAACGAAACGACGTGAATATGTTGCAAGAAAATTGATGGAGA
GAAAATGCCGGTTCGAACTAAGAACTTGATGCTACACAAATCAAAGATTT
TCAAGAAATGTTCAAAACCAGCAATTTGCGAACTTGATGTCCTTGTTCAG
ATCTATGATTAATGTTGGGGATACGTCTTACAAATCTCACAGCTCTCATC
AAAAACAGAAACCAGATACTTCAATTTCACAACAAATGACTCGCTACAGA
CAAAGAAAAATCTTTTCACAACAGTGGATATTTCATATGGGGAAGAATAT
AATTTTCAGTTCACCCCTTTACCAACAGGGCGACCTCTTGTGATCAATGC
TAGAGCTCCAAGCACTGCATTGACACATAATGCCTACAAGAATTTGAGAA
ACACTTGCAAAACTTATCAGCCAAAGTGCGAACACACCGCGGCAAAGAAC
TTTTGGTTGACGCTCGCTCACAACCCTGCTCAAAAGAAGATCATTTTCAT
TCTTGAATTAGAGAATCTATTTCCGCAAGTTCCAAAGAATTGTGATAAAT
CTTCATTTGTAAAGAGTTTTGTGGTGACTGATGGAAAATATGGACCACTT
TAAAACAATTATCTGGTTATATTGTGTCTGGTGTTCATTAACATTGGTGA
AATCGAATGTCATTAGAGGATATATGGCAAGATTGAGGATAGCTAAACGA
ATTTGTTTACTACATCCAACAGATAAAACGAAACGACGTGAATATGTTGC
AAGAAAATTGATGGAGAGAAAATGCCGGTTCGAACTAAGAACTTGATGCT
ACACAAATCAAAGATTTTCAAGAAATGTTCAAAACCAGCAATTTGCGAAC
TTGATGTCCTTGTTCAGATCTATGATTAATGTTGGGGATACGTCTTACAA
ATCTCACAGCTCTCATCAAAAACAGAAACCAGATACTTCAATTTCACAAC
AAATGACTCGCTACAGACAAAGAAAAATCTTTTCACAACAGTGGATATTT
CATATGGGGAAGAATATAATTTTCAGTTCACCCCTTTACCAACAGGGCGA
CCTCTTGTGATCAATGCTAGAGCTCCAAGCACTGCATTGACACATAATGC
CTACAAGAATTTGAGAAACACTTGCAAAACTTATCAGCCAAAGTGCGAAC
ACACCGCGGCAAAGAACTTTTGGTTGACGCTCGCTCACAACCCTGCTCAA
AAGAAGATCATTTTCATTCTTGAATTAGAGAATCTATTTCCGCAAGTTCC
AAAGAATTGTGATAAATCTTCATTTGTAAAGAGTTTTGTGGTGACTGATG
GAAAATATGGACCACTTTAAAACAATTATCTGGTTATATTGTGTCTGGTG
TTCATTAACATTGGTGAAATCGAATGTCATTAGAGGATATATGGCAAGAT
TGAGGATAGCTAAACGAATTTGTTTACTACATCCAACAGATAAAACGAAA
CGACGTGAATATGTTGCAAGAAAATTGATGGAGAGAAAATGCCGGTTCGA
ACTAAGAACTTGATGCTACACAAATCAAAGATTTTCAAGAAATGTTCAAA
ACCAGCAATTTGCGAACTTGATGTCCTTGTTCAGATCTATGATTAATGTT
GGGGATACGTCTTACAAATCTCACAGCTCTCATCAAAAACAGAAACCAGA
TACTTCAATTTCACAACAAATGACTCGCTACAGACAAAGAAAAATCTTTT
CACAACAGTGGATATTTCATATGGGGAAGAATATAATTTTCAGTTCACCC
CTTTACCAACAGGGCGACCTCTTGTGATCAATGCTAGAGCTCCAAGCACT
GCATTGACACATAATGCCTACAAGAATTTGAGAAACACTTGCAAAACTTA
TCAGCCAAAGTGCGAACACACCGCGGCAAAGAACTTTTGGTTGACGCTCG
CTCACAACCCTGCTCAAAAGAAGATCATTTTCATTCTTGAATTAGAGAAT
CTATTTCCGCAAGTTCCAAAGAATTGTGATAAATCTTCATTTGTAAAGAG
TTTTGTGGTGACTGATGGAAAATATGGACCACTTTAAAACAATTATCTGG
TTATATTGTGTCTGGTGTTCATTAACATTGGTGAAATCGAATGTCATTAG
AGGATATATGGCAAGATTGAGGATAGCTAAACGAATTTGTTTACTACATC
CAACAGATAAAACGAAACGACGTGAATATGTTGCAAGAAAATTGATGGAG
AGAAAATGCCGGTTCGAACTAAGAACTTGATGCTACACAAATCAAAGATT
TTCAAGAAATGTTCAAAACCAGCAATTTGCGAACTTGATGTCCTTGTTCA
GATCTATGATTAATGTTGGGGATACGTCTTACAAATCTCACAGCTCTCAT
CAAAAACAGAAACCAGATACTTCAATTTCACAACAAATGACTCGCTACAG
ACAAAGAAAAATCTTTTCACAACAGTGGATATTTCATATGGGGAAGAATA
TAATTTTCAGTTCACCCCTTTACCAACAGGGCGACCTCTTGTGATCAATG
CTAGAGCTCCAAGCACTGCATTGACACATAATGCCTACAAGAATTTGAGA
AACACTTGCAAAACTTATCAGCCAAAGTGCGAACACACCGCGGCAAAGAA
CTTTTGGTTGACGCTCGCTCACAACCCTGCTCAAAAGAAGATCATTTTCA
TTCTTGAATTAGAGAATCTATTTCCGCAAGTTCCAAAGAATTGTGATAAA
TCTTCATTTGTAAAGAGTTTTGTGGTGACTGATGGAAAATATGGACCACT
TTAAAACAATTATCTGGTTATATTGTGTCTGGTGTTCATTAACATTGGTG
AAATCGAATGTCATTAGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14377MSTRG.14377Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14377.1.p1MSTRG.14377.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14377.1.p1.exon7MSTRG.14377.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14377.1.p1.exon6MSTRG.14377.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14377.1.p1.exon5MSTRG.14377.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14377.1.p1.exon4MSTRG.14377.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14377.1.p1.exon3MSTRG.14377.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14377.1.p1.exon2MSTRG.14377.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14377.1.p1.exon1MSTRG.14377.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119_pilongenomesc0000119_pilon:622983..626202 -