MSTRG.14344.1.p1 (mRNA) -

Overview
NameMSTRG.14344.1.p1
Unique NameMSTRG.14344.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000119_pilon:200400..203454+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14344.1.p1 ID=MSTRG.14344.1.p1|Name=MSTRG.14344.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3055bp|location=Sequence derived from alignment at sc0000119_pilon:200400..203454+ (Clytia hemisphaerica_ch_hm2_pilon)
GCGTTGTTTAAAAACGATTGGCACCTCTTTTAACACTGTGACGTCATTAG
TGGATCGTGTTAAAATTAACTATTTTTGCACCTCGTGGCTCCACACCTCA
GTttcgaaattaaaaaacaaatatcaCAGCTAGTCTGGATactaaattga
atttttcttttgtaggaGCCAATCAGAAGCCAGAATGAGATTATATGGAC
AATACTAACAATGCTTTAAACCAAAGCCTTTTGTTTTTTACCACAGAGGT
TTGGAAAGGAACTTGCTCACGTATTCAAACAaatcaaatgatatttttgg
TCAAACACTTCTCATCATCATTGCATACGATACGATTCAAAAGCACGTAC
ACTTTTCATTCTTCTCACACTGTCGattcttcatttaatttaatTGCTTC
ATCATGGAAATCGATATGGTACGTAAATTACTTTTATTAGAAATTCGACA
TTCGTTTTTGAGGGATTTTTTGGgtcttttaagggctctgaccatagtga
atttttcataattgccgtgtttaaaatgtgttttctgactgatgtaacca
acaaaactatgacatgttatacattttcagttagacaaactattcctgaa
tctgaaaattcaaaaattgcattgaaaaagtttgatgaagaagaaaatga
agacttttgcgaggaagagtatttcaactttgaagagcttagtttcggcg
atgaaaaaacattttgaaaaaactttcgtagtagatggtgtatcttttat
cgaacaataaaaatttttgcggaaaatttttgtaaatgcttctttgtctc
gaaatcttcaaaatagtggtttttcttcaatttttcatcttgattatgct
taaaaaaacagtcataactgttgacacatctttttagaaaaattttccgc
aaaatttagaaaagttcaattctttgcggacattttgaaaagagttcgaa
acaaaatagttaattacccattaaaacttagcactttttataaaagaaga
tgatgcaacatattattaacgtctttttaaagttcataacgtcatttttg
caattaaattcttaattactcttaagagatttgattaaaaagcaatttat
aaacgcaattctttgttaaaagtgttaaagaatctaaaacataactttta
cgttcagatactaaaattaattttctgactatggtcagagcccttaaaag
tCCTTCGAGGCGCTTCTTATTCTACACTCTTCTGCGTTGATTGCATCGAA
ATTTTAATGTGTGAAATTAgagattttatttgtttttattcttttatagg
GCGAACACGCATCTATTCTTTACGGAACTCATTACCCGAATAAAATCTTT
GTCGGATGCCTTCCCGCAAGAGTAAGTCAAATAATGCATATTTTTTCTTC
CTCTCACATTCAGCACCAGACTACCTTATCATActgaaactttttttatg
aaattaaaatttgagaTACCGTTTTCTATTAGGGAAggataaattttatt
ttgtgtAGCAAAACACTGTTTTTGAGCCTCTAGATGGGTTTGTTTTGAAG
GCTTCGAAAGTGTTTCAATTAGTGATGTTTGTCTGGtttgtaaacttttt
atttattctttagaTAACAGCTGCTTCTCTCGGCGAATATTTTGGCTCTT
TTGGCGAGGTCATCGAGGCAAAGGTCGTATTAGACGATGCCAAGAAATCG
AAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATGCCAAAACTGT
TTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCATCGTTGTTGGAC
CTGCTGTAAAAAGAGAGGTTGCTATGATTTTTGCTTCGTTGATCTTTCAA
ATACACTTGAAAAGTCATAAGGGGTAAATTACTCTGTTAAAGGCCCTTTA
CGCTATGTTATGTCAACTAGTATAGTTCTCCTCCATGTTTGCCCTTTGCA
TCTGAGTTTGGCTGTAACCAAAACTTCAACATCAaccgatttttttataa
gagtatcTAAAATTTCTATGACTATAATAATGATGATGActataatttaa
aactttttcttttatgttATTCAGTTCAAGGAGCGTGTAGCAGACGAGAG
TGTAAAGATCGTGATGGCACAGGAAGCGGTCATCGAACACGAAATGAGAA
GGAGCAATGAACACCGACAAAGCAACGACGTTTATAATCCACCAAGGCGT
TTTATTTACCGCCCGTTGAAACAAGAAAAAGATGATGATAACATGGAGAC
CAAAACCTTGACAGACTACCAGCAAGATGACGTGAAACCACCTTGCAATT
GCAATGATGCTATTGCTCTTCCAAACCCGCCTCAACAAACATCTCAACGC
CCTCTCCCATCGAATTATGGTGCATTTTACTATCCACAGCAGCCACGGCA
TCAACAACTATTGTATTTTGATCCAAATTCCGGatttttctatcattaaa
gttgtttttttatattttttgtaattttgttggttttttACAAGGTTTGA
TGTAGTAGGTGTATTTAAAACTTGTATACGTTTTTAAGTATGTTTGTATG
TATATTTTAAGAGTATTTTTATTGTCCTATAGTTCTATATTGTCCTGTAA
ATTGTTTAGTCTTACCACGCCCATTTATGTAAATTTACTGACTTTGTAGG
aatatttttattgattgatgcaacatacacgttttttacaagaacaaatc
aaacaaacacAAGGCTTcaattgtcaaaatattttaatataagttaagaa
catattttaaggcttcacagaaaattgaataaaaatactcaaaaaatggt
gaaaataagaacatcaaggcttcaaaaatgtagGATGTccttataagaaa
acgtgtacaTTTATTGACACATtgcatatattttatttttgttgtacTTT
GTAAATTGTTTAGTCTTACCACGCCCATTTATGtagatttattgatttta
taggaaatatattttttattgattgatgcaacgaacattttatttttacc
catttatctaggcttattttttcaaataaaaacgatAGatttattgatgt
tatag

Coding sequence (CDS) from alignment at sc0000119_pilon:200400..203454+

>MSTRG.14344.1.p1 ID=MSTRG.14344.1.p1|Name=MSTRG.14344.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2664bp|location=Sequence derived from alignment at sc0000119_pilon:200400..203454+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAATCGATATGgGCGAACACGCATCTATTCTTTACGGAACTCATTA
CCCGAATAAAATCTTTGTCGGATGCCTTCCCGCAAGAaTAACAGCTGCTT
CTCTCGGCGAATATTTTGGCTCTTTTGGCGAGGTCATCGAGGCAAAGGTC
GTATTAGACGATGCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTC
CCGTGCTACCGATGCCAAAACTGTTTTATCGGCTGGAGATTTTTACATGC
TGGGAAAACGCATCGTTGTTGGACCTGCTGTAAAAAGAGAGTTCAAGGAG
CGTGTAGCAGACGAGAGTGTAAAGATCGTGATGGCACAGGAAGCGGTCAT
CGAACACGAAATGAGAAGGAGCAATGAACACCGACAAAGCAACGACGTTT
ATAATCCACCAAGGCGTTTTATTTACCGCCCGTTGAAACAAGAAAAAGAT
GATGATAACATGGAGACCAAAACCTTGACAGACTACCAGCAAGATGACGT
GAAACCACCTTGCAATTGCAATGATGCTATTGCTCTTCCAAACCCGCCTC
AACAAACATCTCAACGCCCTCTCCCATCGAATTATGGTGCATTTTACTAT
CCACAGCAGCCACGGCATCAACAACTATTGTATTTTGATCCAAATTCCGG
atttttctatcattaaATGGAAATCGATATGgGCGAACACGCATCTATTC
TTTACGGAACTCATTACCCGAATAAAATCTTTGTCGGATGCCTTCCCGCA
AGAaTAACAGCTGCTTCTCTCGGCGAATATTTTGGCTCTTTTGGCGAGGT
CATCGAGGCAAAGGTCGTATTAGACGATGCCAAGAAATCGAAACGTTTTG
GGTTCGTGTCTTTCTCCCGTGCTACCGATGCCAAAACTGTTTTATCGGCT
GGAGATTTTTACATGCTGGGAAAACGCATCGTTGTTGGACCTGCTGTAAA
AAGAGAGTTCAAGGAGCGTGTAGCAGACGAGAGTGTAAAGATCGTGATGG
CACAGGAAGCGGTCATCGAACACGAAATGAGAAGGAGCAATGAACACCGA
CAAAGCAACGACGTTTATAATCCACCAAGGCGTTTTATTTACCGCCCGTT
GAAACAAGAAAAAGATGATGATAACATGGAGACCAAAACCTTGACAGACT
ACCAGCAAGATGACGTGAAACCACCTTGCAATTGCAATGATGCTATTGCT
CTTCCAAACCCGCCTCAACAAACATCTCAACGCCCTCTCCCATCGAATTA
TGGTGCATTTTACTATCCACAGCAGCCACGGCATCAACAACTATTGTATT
TTGATCCAAATTCCGGatttttctatcattaaATGGAAATCGATATGgGC
GAACACGCATCTATTCTTTACGGAACTCATTACCCGAATAAAATCTTTGT
CGGATGCCTTCCCGCAAGAaTAACAGCTGCTTCTCTCGGCGAATATTTTG
GCTCTTTTGGCGAGGTCATCGAGGCAAAGGTCGTATTAGACGATGCCAAG
AAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATGCCAA
AACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCATCGTTG
TTGGACCTGCTGTAAAAAGAGAGTTCAAGGAGCGTGTAGCAGACGAGAGT
GTAAAGATCGTGATGGCACAGGAAGCGGTCATCGAACACGAAATGAGAAG
GAGCAATGAACACCGACAAAGCAACGACGTTTATAATCCACCAAGGCGTT
TTATTTACCGCCCGTTGAAACAAGAAAAAGATGATGATAACATGGAGACC
AAAACCTTGACAGACTACCAGCAAGATGACGTGAAACCACCTTGCAATTG
CAATGATGCTATTGCTCTTCCAAACCCGCCTCAACAAACATCTCAACGCC
CTCTCCCATCGAATTATGGTGCATTTTACTATCCACAGCAGCCACGGCAT
CAACAACTATTGTATTTTGATCCAAATTCCGGatttttctatcattaaAT
GGAAATCGATATGgGCGAACACGCATCTATTCTTTACGGAACTCATTACC
CGAATAAAATCTTTGTCGGATGCCTTCCCGCAAGAaTAACAGCTGCTTCT
CTCGGCGAATATTTTGGCTCTTTTGGCGAGGTCATCGAGGCAAAGGTCGT
ATTAGACGATGCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCC
GTGCTACCGATGCCAAAACTGTTTTATCGGCTGGAGATTTTTACATGCTG
GGAAAACGCATCGTTGTTGGACCTGCTGTAAAAAGAGAGTTCAAGGAGCG
TGTAGCAGACGAGAGTGTAAAGATCGTGATGGCACAGGAAGCGGTCATCG
AACACGAAATGAGAAGGAGCAATGAACACCGACAAAGCAACGACGTTTAT
AATCCACCAAGGCGTTTTATTTACCGCCCGTTGAAACAAGAAAAAGATGA
TGATAACATGGAGACCAAAACCTTGACAGACTACCAGCAAGATGACGTGA
AACCACCTTGCAATTGCAATGATGCTATTGCTCTTCCAAACCCGCCTCAA
CAAACATCTCAACGCCCTCTCCCATCGAATTATGGTGCATTTTACTATCC
ACAGCAGCCACGGCATCAACAACTATTGTATTTTGATCCAAATTCCGGat
ttttctatcattaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14344MSTRG.14344Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14344.1.p1MSTRG.14344.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14344.1.p1.exon1MSTRG.14344.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14344.1.p1.exon2MSTRG.14344.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14344.1.p1.exon3MSTRG.14344.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14344.1.p1.exon4MSTRG.14344.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000119_pilongenomesc0000119_pilon:200400..203454 +