MSTRG.14321.1.p1 (mRNA) -

Overview
NameMSTRG.14321.1.p1
Unique NameMSTRG.14321.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000118_pilon:818519..821137-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14321.1.p1 ID=MSTRG.14321.1.p1|Name=MSTRG.14321.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2619bp|location=Sequence derived from alignment at sc0000118_pilon:818519..821137- (Clytia hemisphaerica_ch_hm2_pilon)
TATGCCCGCAAATTCAAACGAATAACAACAGATTACGAGGGGTCGATCAA
TGTTACGTTTCCTACTGCATATGGTATCATGAAGAAAGCATTCGAGGAGT
CCGCAACCGGATACATTCTTTTTTGTCGTAGAAATCCAGGACATACTAAG
AACAATTCCAATGCTAATAAGTGAGTTTCCAGGATACGTTTTCATATGAT
ACGTTATGTCTGAATACTATTTATTAGCTACTACTTGCTTTTTTTCCCGT
CGAGGAATGTTATCAGTCAGACAGCCTATAGATTTTACCGTTAGAGTTAC
AGGTTATATTATTGCTTTTATCAGTCGTATTGGAAGATGTCAAAAACACC
TATGAGTTTCCTTCGAGAGACCTTCAGCTTATAGACCTTCTTACTCATTT
TAGCTATTTCAAAGTCGTTGGCTGGGAAGACGAACAATCAATAGAGCGTT
TGATTTTTAATCATTTAACAAATCATAAAAAAACAATCACATTTGACAGT
CGAGGATATTCATTCAACTTACGGTGAAATGGAGGAACTCACAATAAAAC
AACGATTTTATATAATACGTGCTTTACCGAACTACCACCATTGGGCCTCT
CGTTCACAGACAGGAGTGAAGATGGATGACCATTTCCTTCCAACCAGCAA
TTCTCCAAGAAATTAGATTTACAGTGCCCTGAAAGACCATTTAGATGGGA
AATGCAATGCAGTAACTTTAATAAAGAACGTTATAATCTTTGTTTTGGAC
AAACCGTACCATATCAAAACAATCCTAAAGACCTACAACAAAAAGGTATC
AAATTATATTATTTTTATTTCCTTCTTATTAGATGAAAAATCTAAAAAGA
CGAGCTTTTAGTTTTATATGACAGTACAAATGCTTCAGAACAAATCGCTA
CCTCATTTCAAAAGAAGCTTAAGTCCGGGAGCCTTAATTCAAAAGGGGCC
TAAGTCCATTTTTGTGATTTTGAATAAATTACAATTAAAGTTTTTTCTAC
ATTCTGAAGTCATTTTTGAAGGTTAAGTCTTACAGTAAATGTTTTATGAA
ACTCATACCTATAAATTGTTTATTAATTAGAAGACACGTTGTTGGAAAAT
AAATTATTGCTTGGACCTAGGCCTTCTTTGAATCAAGGTAGGTAGCGAAA
TACTTACTTTCACTTCAGTTATCATAAAATCTACCATATTTTTTAGCAAA
ACTTTAAACGAAATCGTAAATCGATCCGTAAAAAAACACTTGTCGCCGAG
CTTGGCCTAACCGATGAAGATTTCCAACAAACAGCACTGCTTTCACCCCT
TGAAAGGTTGTATCAGGATTTCAAATGCAATCTTTATAATGAAGGCACGA
TAGCTTGGAGAGAAAACGGACGATTTAAGCAATGCCTCATTATGAACGAT
TATGATTCAATGAGTGGAAAATTCAAGGTATTATATCTCGACTTAGGTCT
CTGTGTTCTCTCTCAGAACAAATTGACTGGCGGCATTTGCATGAGTTCAA
GGTGTGTCATTCAAGGTTTTCGAAATGGAATGTGGGTCGGACTCGACTGT
AGTAGATTTTGGATGATGTCAATAAATTATGTGTAAATGTTCTATATAAG
CATTGCTTTGTAAGCACAAGATCTGAAACAAGCTGCCTTGTTCAAACCAA
AAGATCGTTTTTTCTTTACTGAGTGTAATTTTATCTTTATTTTAGTTCAA
CAACTTCGTTATCGTGAGGAGAATAGGCGAAACAACAAAATGTACATGTG
GAATCCACAGAGCCTTCTCTCTTTCACTATCAAAAGTGATGAATGGGATG
GAATCGATTGTTGCCATGTCCGTGCATTGAATGATATCTATTCTGAGGTA
AAGACTAGCTTATGTTACTTAGTTGATGCAGAAAAAACTTCCTTTTTCTT
ATCTTTTTTTATTTTCTATCAGCTCGCGATATTTAGTGTCTTTTTAATGC
ATAATGTTTATCAAAGAAAATAACATTCCCCAATGTACACAATTTTTAAA
GCAATCCTTGGTGCTAGATAATGCCAAAAATACCACTTTTCTAGAAATTT
TTGTTTTTTTTCTTATTCTCAAGTGTATGGTTGAGCCCTTAGCCCACCCT
TAGCAATTAAAAAATATATTTTATTTTTTTAGTTTAACATTGGACCTTCT
GGGTCAGATGATGTACATTCCTACTGTCAACCTGCCGATGTTGTTGGTAT
TACAAATACTATAATGTCGGAGAAGATCACTACTGGATTGAATGCTGTTG
TGCAAGATGTTCTTCCACAGCAATCAAAAAATGACAAAGTGGAAAAGTTT
GCTGTGAGAGCATCTACACACAACATCGTCCACTTGTTTAAAGGTAACAA
AAACGGTCACATTTACATCAGATGCTGCTCAGGGCTATGCGCCAGTACGT
ACAGGAGGAAAGTCAACTTACGAACCCTTGACGAGAAGACTGCCCTCACA
CGGAATTGTTTAAAAGTTACATGTCAACCAACTGGGACAAGCACAAGCTA
TCGAGAGAGGTGCGTACAGTTGAACCAACTGGGGATGAAACTGTTGACGA
GGCTCCAAATGATGACAATGATGATTCAAATGATGCGGATTTATGACTAT
GACGGCGATGATGATTTAA

Coding sequence (CDS) from alignment at sc0000118_pilon:818519..821137-

>MSTRG.14321.1.p1 ID=MSTRG.14321.1.p1|Name=MSTRG.14321.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000118_pilon:818519..821137- (Clytia hemisphaerica_ch_hm2_pilon)
TTTAACATTGGACCTTCTGGGTCAGATGATGTACATTCCTACTGTCAACC
TGCCGATGTTGTTGGTATTACAAATACTATAATGTCGGAGAAGATCACTA
CTGGATTGAATGCTGTTGTGCAAGATGTTCTTCCACAGCAATCAAAAAAT
GACAAAGTGGAAAAGTTTGCTGTGAGAGCATCTACACACAACATCGTCCA
CTTGTTTAAAGGTAACAAAAACGGTCACATTTACATCAGATGCTGCTCAG
GGCTATGCGCCAGTACGTACAGGAGGAAAGTCAACTTACGAACCCTTGAC
GAGAAGACTGCCCTCACACGGAATTGTTTAAAAGTTACATGTCAACCAAC
TGGGACAAGCACAAGCTATCGAGAGAGGTGCGTACAGTTGAACCAACTGG
GGATGAAACTGTTGACGAGGCTCCAAATGATGACAATGATGATTCAAATG
ATGCGGATTTATGACTATGACGGCGATGATGATTTAATGTACATGTGGAA
TCCACAGAGCCTTCTCTCTTTCACTATCAAAAGTGATGAATGGGATGGAA
TCGATTGTTGCCATGTCCGTGCATTGAATGATATCTATTCTGAGTTTAAC
ATTGGACCTTCTGGGTCAGATGATGTACATTCCTACTGTCAACCTGCCGA
TGTTGTTGGTATTACAAATACTATAATGTCGGAGAAGATCACTACTGGAT
TGAATGCTGTTGTGCAAGATGTTCTTCCACAGCAATCAAAAAATGACAAA
GTGGAAAAGTTTGCTGTGAGAGCATCTACACACAACATCGTCCACTTGTT
TAAAGGTAACAAAAACGGTCACATTTACATCAGATGCTGCTCAGGGCTAT
GCGCCAGTACGTACAGGAGGAAAGTCAACTTACGAACCCTTGACGAGAAG
ACTGCCCTCACACGGAATTGTTTAAAAGTTACATGTCAACCAACTGGGAC
AAGCACAAGCTATCGAGAGAGGTGCGTACAGTTGAACCAACTGGGGATGA
AACTGTTGACGAGGCTCCAAATGATGACAATGATGATTCAAATGATGCGG
ATTTATGACTATGACGGCGATGATGATTTAATGTACATGTGGAATCCACA
GAGCCTTCTCTCTTTCACTATCAAAAGTGATGAATGGGATGGAATCGATT
GTTGCCATGTCCGTGCATTGAATGATATCTATTCTGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14321MSTRG.14321Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14321.1.p1MSTRG.14321.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14321.1.p1.exon5MSTRG.14321.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14321.1.p1.exon4MSTRG.14321.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14321.1.p1.exon3MSTRG.14321.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14321.1.p1.exon2MSTRG.14321.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14321.1.p1.exon1MSTRG.14321.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118_pilongenomesc0000118_pilon:818519..821137 -