MSTRG.14292.1.p1 (mRNA) -

Overview
NameMSTRG.14292.1.p1
Unique NameMSTRG.14292.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000118_pilon:474222..478582+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14292.1.p1 ID=MSTRG.14292.1.p1|Name=MSTRG.14292.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4361bp|location=Sequence derived from alignment at sc0000118_pilon:474222..478582+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTACGTAGAGTGCTTGATTGGTAGTCAAGATGTCTGCTTTTACTGCCCT
GGTATTACTTTTAGCCTTGTCCAGGTAAGGTgtttatgtgtgtttttctt
tatattctATTTTACAAAGTCTGCTgattttacacccctgtgtcacagca
cagccccactggaaaatttggcaaaatttagtccccggtgagaaaaatac
ccttgaatttcagcccaatttcaatcgaaattttcacccccgctgtagga
aaaagtttcaccggggctgtgacaACTAAAACTGGCCTTATTTAAGAATG
GTAGGGCAGCGTCTGTTGATGGCCAAAGAGGGcagttttttaatattttt
cgactgaaagagctgttttttaccaactttttattgatttCAGAACAAGG
GGGCGGCGTCTGGTAACTGGACCCTAAAAGGGTCTGGAAAAGGTAATTAC
TTTCACCCTTTATTGTTTTTATAGTTATTCTACCACCTCAACATCAACCC
CCGCACAACTTTCAGCCAACGATGACAGTGTTCTTGATATTGCTGCTTTC
AATGTCCGAATCTTTGGTGCTAATAAAGCCACAGATCAAACTACTATGGA
TATTCTTGTGAAggttaatacacttttttattaggTGTGGCCATGGTATG
TTGGTCggcaaaataattaaaataaaagtagaatttcacctaaaaaatat
cctaaaaaggctacttcttgacaaaaatgcgaaaaagaaaataaaaaaac
acaaaaggtctaattcatggataaaatgaaaaattgaacatacaattctc
aaaaccttggaaaaaactaccaaaattttgaaaatttggcagtctgtaaa
gcaatgaaaataaaaatgatatactaaatcaattttatttttatctcgat
ttttggaattccagggtcggtcgggcccgtaaaacaacttatcaaattgg
tctcgccttagaaAACTAAGCAAAAACAAATTAGGAATAAACTGGTGCCT
AGAGCAAATTAAAGGTGAAGGGTATACATTCTAAAATCATTTTCCACCGA
AGGAAAAGAAAAGGCTAAGAACAATTTTACACAATTAAAGTGATACGATT
AAAATTTGAGGTTATTTTAGAGAGAGTATTAATGGTTATTTCTTGTACTC
TTGACAACCTTTATTCAATAGTTTATTCTCTGAACCTAAACTTTTCTTTT
CCAGATCATTTTGCGATATGACTTAATTTTGATCCAAGAAATTCGAGACA
GCAGTGGAACAGCTATTCAAACTCTCCTCAAAACTCTCAATAAAGAGTTG
AAAGTACCAGGGTATGTTTTCGTCATTTCCAGGCTTTCTGCCTTCAAGCT
TCAGCCCtctttgttgtatttttttcactCATAATAGTGTACCTAAGTTA
ACAAACAGGATATACTTTGCAACCTaaaaaaaCGGGGGTAAAAATTATAT
ACACATTTGATGGTTCCACCGGTTCTGTAACACGTTGGTGCTTGTATGTA
ACTAGAAAAGGCCTGTTATGAATGGATCTAACAGTATTTTAGATcctaaa
aactaattttatttcattatagTGCGTCCTACAAGATGAAATTGAGTCCA
CGCCTTGGACGAACAGCAAGCAAGGAAGAATACGCCTACATTTTCAGGTT
TTCTTTTTAAGGCCCTCTTAGACAAGGTTCACCAAAATTTAATCTAAGCC
TTCAaacttcagataagtgaaatgaaaatgaaatataaaaaattgatttc
caAATAGTtctttcaggggggggggctcgatAGCCTAGCCAAgggtagta
agtaagtaagtctgcgaccgcagtcggagaaGACCTGAAGGctcttcttt
cgatagctgtctacccgaaggtaggggaaggCGTCActttttctccctgg
attgctccacttaccctttgacccttctcttaattgctgagcatcaagca
gagaggcatcaagtaccatttttgaaatctttggtatgTCCCGGcagggg
ttgaacccacaaccttgcgcaccgtagccggatgctctaccactgcacta
cggcaGCCAAAGGTAATTGAAAAGAATTGGCAATGATTACCCTGAGGTTT
GAGATATCTCTTTTGCTTTAGATCTGACTTACTAACATGCATCGATTCGT
TCACTTTCAACGATCATTTTGACGTTTTCGAAAGGGAACCATATGTTGTT
CGATTCAAAAGTGATTTAGCAGGTATGTGAATTACTCAATTCAACCTTGC
ATTGAATcattgtcaaaatatattggaaTTTCTGGTTATTTCGTGGTCTG
AAAGAATTGGGCCAAAAATGGCGATTTTAGCACTTTTTGAAACCTTGCTT
CAGATTCACTTTGAGTTATTGTAGCTTTCTCAATCAAGTTCCCCAGTGGT
AACTCCGATCACCAtgtcacgcaattttttgtcttcaatcacgatcacgc
aaatctgcaaaaaacttGGATAATCAcgcgtgcctttgaaaaaattccaa
atcactcATCACggctcaaatatttttcaattcacgATCACATTTTGACA
TCTGCTCACGCAATCACctttaaaaaatttcctaatcttaatcacgtaat
cacgccaGAAAAAAGTCTCATCACGACATCACGCAAACCGTTTTGGGGGC
CTCGTCCCAATAGGTCAATCTTCTTTGGGACATTCTATATCATTACAGGG
Ttcgctttttggacctaccccggtggggtggagttctataaattaacctt
tgtccgttcgttcgttcgttattagctttcctcatgattggctcattagt
tttttctgattttttgcacaaagatgcgtaactataaaccctcgaatgtg
acggagttCGATTTtcgaaccaaaaaaaatttttgggcaaaatttgggcc
aaaaaaaggctaaaaaaagagtgaaaaaTTGGACCATtaactttttctaa
ttttttgcatgaaagtaggtaaaagatgactcaagcaaaaaattttgttg
gctcgaaaaacgcatgtttatctataagaatctctattaataagcataca
tcaatgtttttagttaatactcaatttttttatgagataaatgttttttt
ttgctcatgagggcttacttttgaagaatgtatgtgtttagacatgaaat
tctGGTTGCTTGGCATGTTTTTCTAGAAAagctggccaaattcgatatta
tttatatgcacattatcaattacttaggtattagcttttctcgagattgg
ctctttgattctttatgattttttgcacaaagatgcataactataaaccc
tcgaatgtgacggagcccgattttcgaaaaaaaaaattttgggtaaattt
gggccaaaaaacggctaaaaatgggttttttggcctttgtgaaaaattag
aacattaactttttctgattttttgcatgaaagtagtgtaccatcatagg
taaaagattgctcaagcagattttttcaaaaaaattttgttggctcaaaa
aacgcatgtttatctataagaatcactattaataagcataatcaatgttc
ttagccaaattactcaattctttgatgagatagatgttttttttgctcac
gagtcttgaatatgaaagattatttcaagagcatgaaattttgaaacaaa
cgactaattttaatagatcgtcactatttgtgttctgaatgattgtttaa
cggtcatgctcacgtagatatcaattatacgtgttaaatgcataaccagg
taggtccataaaagtatcacttgtttttcatTAGGTTTTCTTTAAAACTA
TGGCAGCTTTATATCCCCGTTGCAAGTGACGAATCCAAAGTAGATCTTTC
TATTTTTGTCATTTACAGCGATCAAGGAGTTTGCAGTTGCTGGTATACAC
ACCTCACCGCGAGATGCTACCAACGAAGTTAGCAATCTCACCAAAGTTTA
TGACGCAATTCAACAAAAATGGCGTCTCGATAACGTCATCATAATGGGGG
ATTTCAATGCTGGCTGTGATTTTGTCAAAGAATGGCGCGCCATTGGATTG
GCAAAGGATCCGCGCTTCTATTGGATTATTGATCACAGTAAAGACACGAC
AACGGGACATTCGGATTGCCCGTACGACCGAATTGTGGTCGCCGGACGTG
ACTTGGTGAAGAATGTTATACCATTGAGTGGAGATGTGTTTTATTTtgat
catgaacatataaacgactggacatccatctcctttgtctttttgtagaa
aaggctgctagcttcgttgccgcctcgttaaaagcataaaatgaaacaat
agactttgatgatataccacttgggagtaccttgctaacaacgtcaaaac
ttcgacaaaag

Coding sequence (CDS) from alignment at sc0000118_pilon:474222..478582+

>MSTRG.14292.1.p1 ID=MSTRG.14292.1.p1|Name=MSTRG.14292.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5076bp|location=Sequence derived from alignment at sc0000118_pilon:474222..478582+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTGCTTTTACTGCCCTGGTATTACTTTTAGCCTTGTCCAGTTATTC
TACCACCTCAACATCAACCCCCGCACAACTTTCAGCCAACGATGACAGTG
TTCTTGATATTGCTGCTTTCAATGTCCGAATCTTTGGTGCTAATAAAGCC
ACAGATCAAACTACTATGGATATTCTTGTGAAgATCATTTTGCGATATGA
CTTAATTTTGATCCAAGAAATTCGAGACAGCAGTGGAACAGCTATTCAAA
CTCTCCTCAAAACTCTCAATAAAGAGTTGAAAGTACCAGGTGCGTCCTAC
AAGATGAAATTGAGTCCACGCCTTGGACGAACAGCAAGCAAGGAAGAATA
CGCCTACATTTTCAGATCTGACTTACTAACATGCATCGATTCGTTCACTT
TCAACGATCATTTTGACGTTTTCGAAAGGGAACCATATGTTGTTCGATTC
AAAAGTGATTTAGCAGCGATCAAGGAGTTTGCAGTTGCTGGTATACACAC
CTCACCGCGAGATGCTACCAACGAAGTTAGCAATCTCACCAAAGTTTATG
ACGCAATTCAACAAAAATGGCGTCTCGATAACGTCATCATAATGGGGGAT
TTCAATGCTGGCTGTGATTTTGTCAAAGAATGGCGCGCCATTGGATTGGC
AAAGGATCCGCGCTTCTATTGGATTATTGATCACAGTAAAGACACGACAA
CGGGACATTCGGATTGCCCGTACGACCGAATTGTGGTCGCCGGACGTGAC
TTGGTGAAGAATGTTATACCATTGAGTGGAGATGTGTTTTATTTtgatca
tgaacatataaacgactggacatccatctcctttgtctttttgtagATGT
CTGCTTTTACTGCCCTGGTATTACTTTTAGCCTTGTCCAGTTATTCTACC
ACCTCAACATCAACCCCCGCACAACTTTCAGCCAACGATGACAGTGTTCT
TGATATTGCTGCTTTCAATGTCCGAATCTTTGGTGCTAATAAAGCCACAG
ATCAAACTACTATGGATATTCTTGTGAAgATCATTTTGCGATATGACTTA
ATTTTGATCCAAGAAATTCGAGACAGCAGTGGAACAGCTATTCAAACTCT
CCTCAAAACTCTCAATAAAGAGTTGAAAGTACCAGGTGCGTCCTACAAGA
TGAAATTGAGTCCACGCCTTGGACGAACAGCAAGCAAGGAAGAATACGCC
TACATTTTCAGATCTGACTTACTAACATGCATCGATTCGTTCACTTTCAA
CGATCATTTTGACGTTTTCGAAAGGGAACCATATGTTGTTCGATTCAAAA
GTGATTTAGCAGCGATCAAGGAGTTTGCAGTTGCTGGTATACACACCTCA
CCGCGAGATGCTACCAACGAAGTTAGCAATCTCACCAAAGTTTATGACGC
AATTCAACAAAAATGGCGTCTCGATAACGTCATCATAATGGGGGATTTCA
ATGCTGGCTGTGATTTTGTCAAAGAATGGCGCGCCATTGGATTGGCAAAG
GATCCGCGCTTCTATTGGATTATTGATCACAGTAAAGACACGACAACGGG
ACATTCGGATTGCCCGTACGACCGAATTGTGGTCGCCGGACGTGACTTGG
TGAAGAATGTTATACCATTGAGTGGAGATGTGTTTTATTTtgatcatgaa
catataaacgactggacatccatctcctttgtctttttgtagATGTCTGC
TTTTACTGCCCTGGTATTACTTTTAGCCTTGTCCAGTTATTCTACCACCT
CAACATCAACCCCCGCACAACTTTCAGCCAACGATGACAGTGTTCTTGAT
ATTGCTGCTTTCAATGTCCGAATCTTTGGTGCTAATAAAGCCACAGATCA
AACTACTATGGATATTCTTGTGAAgATCATTTTGCGATATGACTTAATTT
TGATCCAAGAAATTCGAGACAGCAGTGGAACAGCTATTCAAACTCTCCTC
AAAACTCTCAATAAAGAGTTGAAAGTACCAGGTGCGTCCTACAAGATGAA
ATTGAGTCCACGCCTTGGACGAACAGCAAGCAAGGAAGAATACGCCTACA
TTTTCAGATCTGACTTACTAACATGCATCGATTCGTTCACTTTCAACGAT
CATTTTGACGTTTTCGAAAGGGAACCATATGTTGTTCGATTCAAAAGTGA
TTTAGCAGCGATCAAGGAGTTTGCAGTTGCTGGTATACACACCTCACCGC
GAGATGCTACCAACGAAGTTAGCAATCTCACCAAAGTTTATGACGCAATT
CAACAAAAATGGCGTCTCGATAACGTCATCATAATGGGGGATTTCAATGC
TGGCTGTGATTTTGTCAAAGAATGGCGCGCCATTGGATTGGCAAAGGATC
CGCGCTTCTATTGGATTATTGATCACAGTAAAGACACGACAACGGGACAT
TCGGATTGCCCGTACGACCGAATTGTGGTCGCCGGACGTGACTTGGTGAA
GAATGTTATACCATTGAGTGGAGATGTGTTTTATTTtgatcatgaacata
taaacgactggacatccatctcctttgtctttttgtagATGTCTGCTTTT
ACTGCCCTGGTATTACTTTTAGCCTTGTCCAGTTATTCTACCACCTCAAC
ATCAACCCCCGCACAACTTTCAGCCAACGATGACAGTGTTCTTGATATTG
CTGCTTTCAATGTCCGAATCTTTGGTGCTAATAAAGCCACAGATCAAACT
ACTATGGATATTCTTGTGAAgATCATTTTGCGATATGACTTAATTTTGAT
CCAAGAAATTCGAGACAGCAGTGGAACAGCTATTCAAACTCTCCTCAAAA
CTCTCAATAAAGAGTTGAAAGTACCAGGTGCGTCCTACAAGATGAAATTG
AGTCCACGCCTTGGACGAACAGCAAGCAAGGAAGAATACGCCTACATTTT
CAGATCTGACTTACTAACATGCATCGATTCGTTCACTTTCAACGATCATT
TTGACGTTTTCGAAAGGGAACCATATGTTGTTCGATTCAAAAGTGATTTA
GCAGCGATCAAGGAGTTTGCAGTTGCTGGTATACACACCTCACCGCGAGA
TGCTACCAACGAAGTTAGCAATCTCACCAAAGTTTATGACGCAATTCAAC
AAAAATGGCGTCTCGATAACGTCATCATAATGGGGGATTTCAATGCTGGC
TGTGATTTTGTCAAAGAATGGCGCGCCATTGGATTGGCAAAGGATCCGCG
CTTCTATTGGATTATTGATCACAGTAAAGACACGACAACGGGACATTCGG
ATTGCCCGTACGACCGAATTGTGGTCGCCGGACGTGACTTGGTGAAGAAT
GTTATACCATTGAGTGGAGATGTGTTTTATTTtgatcatgaacatataaa
cgactggacatccatctcctttgtctttttgtagATGTCTGCTTTTACTG
CCCTGGTATTACTTTTAGCCTTGTCCAGTTATTCTACCACCTCAACATCA
ACCCCCGCACAACTTTCAGCCAACGATGACAGTGTTCTTGATATTGCTGC
TTTCAATGTCCGAATCTTTGGTGCTAATAAAGCCACAGATCAAACTACTA
TGGATATTCTTGTGAAgATCATTTTGCGATATGACTTAATTTTGATCCAA
GAAATTCGAGACAGCAGTGGAACAGCTATTCAAACTCTCCTCAAAACTCT
CAATAAAGAGTTGAAAGTACCAGGTGCGTCCTACAAGATGAAATTGAGTC
CACGCCTTGGACGAACAGCAAGCAAGGAAGAATACGCCTACATTTTCAGA
TCTGACTTACTAACATGCATCGATTCGTTCACTTTCAACGATCATTTTGA
CGTTTTCGAAAGGGAACCATATGTTGTTCGATTCAAAAGTGATTTAGCAG
CGATCAAGGAGTTTGCAGTTGCTGGTATACACACCTCACCGCGAGATGCT
ACCAACGAAGTTAGCAATCTCACCAAAGTTTATGACGCAATTCAACAAAA
ATGGCGTCTCGATAACGTCATCATAATGGGGGATTTCAATGCTGGCTGTG
ATTTTGTCAAAGAATGGCGCGCCATTGGATTGGCAAAGGATCCGCGCTTC
TATTGGATTATTGATCACAGTAAAGACACGACAACGGGACATTCGGATTG
CCCGTACGACCGAATTGTGGTCGCCGGACGTGACTTGGTGAAGAATGTTA
TACCATTGAGTGGAGATGTGTTTTATTTtgatcatgaacatataaacgac
tggacatccatctcctttgtctttttgtagATGTCTGCTTTTACTGCCCT
GGTATTACTTTTAGCCTTGTCCAGTTATTCTACCACCTCAACATCAACCC
CCGCACAACTTTCAGCCAACGATGACAGTGTTCTTGATATTGCTGCTTTC
AATGTCCGAATCTTTGGTGCTAATAAAGCCACAGATCAAACTACTATGGA
TATTCTTGTGAAgATCATTTTGCGATATGACTTAATTTTGATCCAAGAAA
TTCGAGACAGCAGTGGAACAGCTATTCAAACTCTCCTCAAAACTCTCAAT
AAAGAGTTGAAAGTACCAGGTGCGTCCTACAAGATGAAATTGAGTCCACG
CCTTGGACGAACAGCAAGCAAGGAAGAATACGCCTACATTTTCAGATCTG
ACTTACTAACATGCATCGATTCGTTCACTTTCAACGATCATTTTGACGTT
TTCGAAAGGGAACCATATGTTGTTCGATTCAAAAGTGATTTAGCAGCGAT
CAAGGAGTTTGCAGTTGCTGGTATACACACCTCACCGCGAGATGCTACCA
ACGAAGTTAGCAATCTCACCAAAGTTTATGACGCAATTCAACAAAAATGG
CGTCTCGATAACGTCATCATAATGGGGGATTTCAATGCTGGCTGTGATTT
TGTCAAAGAATGGCGCGCCATTGGATTGGCAAAGGATCCGCGCTTCTATT
GGATTATTGATCACAGTAAAGACACGACAACGGGACATTCGGATTGCCCG
TACGACCGAATTGTGGTCGCCGGACGTGACTTGGTGAAGAATGTTATACC
ATTGAGTGGAGATGTGTTTTATTTtgatcatgaacatataaacgactgga
catccatctcctttgtctttttgtag
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14292MSTRG.14292Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14292.1.p1MSTRG.14292.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14292.1.p1.exon1MSTRG.14292.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14292.1.p1.exon2MSTRG.14292.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14292.1.p1.exon3MSTRG.14292.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14292.1.p1.exon4MSTRG.14292.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14292.1.p1.exon5MSTRG.14292.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14292.1.p1.exon6MSTRG.14292.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000118_pilongenomesc0000118_pilon:474222..478582 +