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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000118_pilon:201313..205662+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.14271.1.p1 ID=MSTRG.14271.1.p1|Name=MSTRG.14271.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4350bp|location=Sequence derived from alignment at sc0000118_pilon:201313..205662+ (Clytia hemisphaerica_ch_hm2_pilon)
TATGTATGTATTTAACTTATATATACGCTATGACATGAGAGTTTATCTCG
AATAACTGTATCGTTATGGAGGCTTTAGACTTTTCTTGTGAAAACAAATT
TATTAGTTTTTCTGTTATCCTAATTTTTATATATTACCTGATTAATTTCA
TTGTGGATCATTGGATTTCAACCGAAgagaagaaaaatgttttggtgACA
GGCTGTGATTCAGGTTTTGGTTTCCAAACAGCTTTAGAATTAAGTGAATC
TAATTGTAAAGTTTTTGCTGGTTGTTTAACTCAAGATGGTGTCAAACGAC
TTGAGAGCAATGCCAGGTTTCGAGGGATGGCTTTTATCATGGACGTGACT
AAAGACGAGGATGTTCAGAAAGCAAAGGAGGTCATTGAAGAGAATGGAGG
TATaagacttttttttatttaagtatttcGTCATGATGGCTACTTAACAT
ACACTTATAGCTATCCGTCTGACTGTATGTCTCGTGTTTTATTATGTTAT
CAAAGATTTGGGTATCTCAAGGGCAGTAGCATGGTGGCAGGGGACAGGGG
ACAGCcgatttttttttgggggggtgCCAAAATACAATGGGCGaaaaaaa
GATACCTCTGATTGATAATTTTGGCGtccatttctttttttacaccttaa
aattggcagttttcggccaaaaagagagaaattaGTTTTCGtactcgctt
cgctcgcgtaattttgcaaagatattttcttttcataggGGGCGAAAAAA
TCTTGATCTCCTTCATTTCGatttgaatctctctgtaatttgaaGCGGAT
TTAGGTATCATGCTCGAGCACGAGTTGAAGAGAGTAGAATTTAGTGTATG
TCAGGAAATTGTGCCTAGTTTTTATTAGAACAAGAAGGCTCCAAAACGTC
TAAAAATGGAATaaaaaaaGCTCTGAGCGTGGGATGAACGAGTTTTAAGC
AAAGTAAGGGTCAATTACTTTTAAtgattattttgtaaatatcgCTCCTT
ATCTTGGCATAAGAACTTCAGAATCTAGTCTTCCTGGGAACACTGAAAAT
AATCCGCTCGAAAATCATCCTAGCGTCCTTCGCATCCTCGAATCTCAGTC
TACGAACAAATCATTTTCGTTTAGTGAGGTTACCCCTGAAGATATCCAGC
GAATAATGATTAAACTTAACCCTTAGACCTTTTTTATTTAAGTGTTTCGT
CAAtggcagtagcgtggtggcagggggaaGGGGCAGTGTTTCATCAATTG
ATACTTAACATCCGCTTATAGCTATCCGTCTGACTGTATGTCTCGTATTT
TACTAGGTTATCAAAGATTTGGGTATATCAATGGCAGTAGCATGGTGGGA
GGGGACAGTCCCTCCCCAGcggccgatttttttttttggggggggggtgc
caAAATACAAAGGGTGCAAAAAGGTACCTCTGATTACTAATATCGGCGCC
CAtttgcttttttacaccttaCAATTTGCAGTTTTCGGTCAAAAATATTA
GTACAATAAGGCtccaaaatatctaaaaattgaataaaagaacAAAGCTC
TAAGCCTGGGATGAACGAGTTTTAAGCAAATTACGTAAggtatactttag
gcgtacaaactttcgcaaacagaaactttcgcggttttcgTGAATTTTGC
CCTTTATCGCGAAAGTAAAAGTCTTCGAAAATTCTTGAAAGGGCTATCCG
CGAAAGTTACTAGAAAAGTACTCGTTTAGCCTGCTAACGCTTCATAAgtc
aaaaagacaaaagtttcaATCCAATTTGTAAgtaattttttcatgtgaaa
attttcatttttgtcttGATTCGTGAAAGTTTATTCATGCTCGCGAAAGA
TATTTTCGTCGagttcgcgaaagtaaatgttggaaatttcgcgattttcc
GACCTCGCGAAGGTTTCTGCTAGGGAAAGTTTGCACGCCTAAAGTACCAT
AGTCATTGTACCATAAATTGTAAAATCCACCTTGTAGATAAATAAGAACA
AGGTAAAGAACATTTGAGGCTTAGTGTgctgaaaaatgagaacagcTGAG
CTTTAAACGATTCTAATTATAGAACTTCAATTAGAATGTTATCTCCTTAA
TATTCAgccaccaaaaatgaaaattaaagatggtaactCAAGCTGCAAGA
TTTAGTTATACTGTGAATTTTCCTATATTTTCTACAGCTTTGGATGGTAT
AGTTAACAATGCTGGTATCGCTATTCATGGATTGATCGAATGGCAATCTA
TCGAATTGATGAAGAAAACATTCGAAGTGAATTATTGGGGAACCGTTCGT
GTTACCAAAGTCATGCTACCATTATTGAAAAAGTCACGGGGTCGTATCGT
CAATGTGACAAGCATGGGAGGTGTGTTGTTTTTACATATAGAACTGCAAA
CTGTTTCATCTATCTTTTTGTGATCCATTGCGAAGATGGAtggttttttt
tcaaagaaatgaaCCCATGATCTGACAAATAGTTTTCTTCTAACGtttgt
ctttttaaaaatagatttcatggCTGGATAATGGGATGGCGGGATGGCGG
GATTGCGGTAATGGTATTACAACCAAAAATGAATAACATACTTTTCTCGC
CTTTCTCTATTAAGAATAGCTTTTCATGACTTCAGATTCTcaataaagat
ttttatttgaaactacAGTGGACGCACttttaatattgaaagtcaccgtc
aacaagaaactctcataaatgccGATCTAtctgaaaatcgaattagataG
CGTCAACTGTAATCTGCTTTTTCTTCGCTAACAAGCCTTTCATGTTACCC
TCTCGATAATAATCATTTACATGTGTGATTCTATTTTGATAGGACGACTC
TCGCCACCCTACACTGCCCCTTATTACGGTTCAAAATATGCAGCTGAAGC
GTTTTCTGATAGCTTACGTCTCGAAGTCAAACCATGGGGTGTTTCAGTAC
ATATTATCGAACCTACTTTCTATGCTACTGGAATCTTGGATGAAGAAAAT
ATGCATCGTGATTGGCGCAAAGTTTGGGATCAACAACCACAGGCAACACA
CGATGAGATTGGGGAAGAGCAATTCAAGAACTGTAAGAGTTACTGCTAAT
CTTATCAATTTCGCCCCATATTCTTTATTAATTTCTTCTTGGTGCACAAT
TTAGAGTGGGAACATTTTGGACTAGATCACAAGGCTAAGTCTCACCAATT
ATACTTACCTTACCAACAAATCGATAGAAAGTCAGTTTTTACAAGCGTTG
AATGACCTCGATATAACACTCCATTCTTTCTActagacccggtaggattt
ttaaGCCTGTAGGAGTAAAAATAGCGGATTGAAACTCGATGAAGATTGAT
ACtctcatgtttttttatggctggggatttgagtttaatgttctactagg
gacgatattttggccaacttTTCCAGTGGGAGAGGTCCCACCGGTTctgc
gagaaaggggtgtaatatACAACGTACAAGTATACATTCATACTTATCAA
CGCAATGGCTTCAGAAGTCTCCAggttaccgtattacttcaaataaacgc
cccctcgaataaacgccccttcctAAAGGAAAGATTTTCGATAAACGCCC
ACCTCAAATAACAAATAAACGcgcccttcgaataaacgcaTCCCCTCTAA
AAAGgatgtttatttgaaacaagtaacTGTTAGGTATGAAGAAAGAGTTA
GACAATCagttttcaaactaattttgaccCACTTCTACATAAAATAAACC
GAAAACGCAAAACAAGGTTCCCATTCGCTTTGATGAAATGACCTTATGGC
TAAAGGTtataataaacgccccctcgaacaAATGCCCTCCTAAAATCCAC
CCGCGGCGTTTATTCGAAGCAATACGGAACAAATataagtatttaagaag
ttttcTCTCGTTTTaacttatcttttttcttttttgcagtTGTGTCCTCG
TTCTTCAATTCCATCAAAATCACTCAAAACATTGGCGAAGTTACCAAGAG
AATCCGTCACGCATTGCTGGCAAAGTTCCCGAGACGTAGATACATCACAG
GACTTGATAGTAAACTGTACGCCATTGGATCACACCTTCCGACAGCTTTT
GTGGATTGGATTATCTCTTGTAAGATCGGCATTCTTCATCCAAAGACAAC
AACGAAGAAAAGTCAATGATTTTTCAAAGTTCGCTGCTTTTCATGGAACA
ACGATTTTGAATTAGTAATCAATTATTACATGAGAATTATTACATAGAAT
ATAATACTTTCAAACAAGATTTTGCCGTAAATAAaccattttttgataaa
aagacTCCAAGGGTCCCTCGCTAAAAAGGTCgatatttgatttatttttg
Coding sequence (CDS) from alignment at sc0000118_pilon:201313..205662+ >MSTRG.14271.1.p1 ID=MSTRG.14271.1.p1|Name=MSTRG.14271.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3948bp|location=Sequence derived from alignment at sc0000118_pilon:201313..205662+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGGCTTTAGACTTTTCTTGTGAAAACAAATTTATTAGTTTTTCTGT
TATCCTAATTTTTATATATTACCTGATTAATTTCATTGTGGATCATTGGA
TTTCAACCGAAgagaagaaaaatgttttggtgACAGGCTGTGATTCAGGT
TTTGGTTTCCAAACAGCTTTAGAATTAAGTGAATCTAATTGTAAAGTTTT
TGCTGGTTGTTTAACTCAAGATGGTGTCAAACGACTTGAGAGCAATGCCA
GGTTTCGAGGGATGGCTTTTATCATGGACGTGACTAAAGACGAGGATGTT
CAGAAAGCAAAGGAGGTCATTGAAGAGAATGGAGCTTTGGATGGTATAGT
TAACAATGCTGGTATCGCTATTCATGGATTGATCGAATGGCAATCTATCG
AATTGATGAAGAAAACATTCGAAGTGAATTATTGGGGAACCGTTCGTGTT
ACCAAAGTCATGCTACCATTATTGAAAAAGTCACGGGGTCGTATCGTCAA
TGTGACAAGCATGGGAGGACGACTCTCGCCACCCTACACTGCCCCTTATT
ACGGTTCAAAATATGCAGCTGAAGCGTTTTCTGATAGCTTACGTCTCGAA
GTCAAACCATGGGGTGTTTCAGTACATATTATCGAACCTACTTTCTATGC
TACTGGAATCTTGGATGAAGAAAATATGCATCGTGATTGGCGCAAAGTTT
GGGATCAACAACCACAGGCAACACACGATGAGATTGGGGAAGAGCAATTC
AAGAACTtTGTGTCCTCGTTCTTCAATTCCATCAAAATCACTCAAAACAT
TGGCGAAGTTACCAAGAGAATCCGTCACGCATTGCTGGCAAAGTTCCCGA
GACGTAGATACATCACAGGACTTGATAGTAAACTGTACGCCATTGGATCA
CACCTTCCGACAGCTTTTGTGGATTGGATTATCTCTTGTAAGATCGGCAT
TCTTCATCCAAAGACAACAACGAAGAAAAGTCAATGAATGGAGGCTTTAG
ACTTTTCTTGTGAAAACAAATTTATTAGTTTTTCTGTTATCCTAATTTTT
ATATATTACCTGATTAATTTCATTGTGGATCATTGGATTTCAACCGAAga
gaagaaaaatgttttggtgACAGGCTGTGATTCAGGTTTTGGTTTCCAAA
CAGCTTTAGAATTAAGTGAATCTAATTGTAAAGTTTTTGCTGGTTGTTTA
ACTCAAGATGGTGTCAAACGACTTGAGAGCAATGCCAGGTTTCGAGGGAT
GGCTTTTATCATGGACGTGACTAAAGACGAGGATGTTCAGAAAGCAAAGG
AGGTCATTGAAGAGAATGGAGCTTTGGATGGTATAGTTAACAATGCTGGT
ATCGCTATTCATGGATTGATCGAATGGCAATCTATCGAATTGATGAAGAA
AACATTCGAAGTGAATTATTGGGGAACCGTTCGTGTTACCAAAGTCATGC
TACCATTATTGAAAAAGTCACGGGGTCGTATCGTCAATGTGACAAGCATG
GGAGGACGACTCTCGCCACCCTACACTGCCCCTTATTACGGTTCAAAATA
TGCAGCTGAAGCGTTTTCTGATAGCTTACGTCTCGAAGTCAAACCATGGG
GTGTTTCAGTACATATTATCGAACCTACTTTCTATGCTACTGGAATCTTG
GATGAAGAAAATATGCATCGTGATTGGCGCAAAGTTTGGGATCAACAACC
ACAGGCAACACACGATGAGATTGGGGAAGAGCAATTCAAGAACTtTGTGT
CCTCGTTCTTCAATTCCATCAAAATCACTCAAAACATTGGCGAAGTTACC
AAGAGAATCCGTCACGCATTGCTGGCAAAGTTCCCGAGACGTAGATACAT
CACAGGACTTGATAGTAAACTGTACGCCATTGGATCACACCTTCCGACAG
CTTTTGTGGATTGGATTATCTCTTGTAAGATCGGCATTCTTCATCCAAAG
ACAACAACGAAGAAAAGTCAATGAATGGAGGCTTTAGACTTTTCTTGTGA
AAACAAATTTATTAGTTTTTCTGTTATCCTAATTTTTATATATTACCTGA
TTAATTTCATTGTGGATCATTGGATTTCAACCGAAgagaagaaaaatgtt
ttggtgACAGGCTGTGATTCAGGTTTTGGTTTCCAAACAGCTTTAGAATT
AAGTGAATCTAATTGTAAAGTTTTTGCTGGTTGTTTAACTCAAGATGGTG
TCAAACGACTTGAGAGCAATGCCAGGTTTCGAGGGATGGCTTTTATCATG
GACGTGACTAAAGACGAGGATGTTCAGAAAGCAAAGGAGGTCATTGAAGA
GAATGGAGCTTTGGATGGTATAGTTAACAATGCTGGTATCGCTATTCATG
GATTGATCGAATGGCAATCTATCGAATTGATGAAGAAAACATTCGAAGTG
AATTATTGGGGAACCGTTCGTGTTACCAAAGTCATGCTACCATTATTGAA
AAAGTCACGGGGTCGTATCGTCAATGTGACAAGCATGGGAGGACGACTCT
CGCCACCCTACACTGCCCCTTATTACGGTTCAAAATATGCAGCTGAAGCG
TTTTCTGATAGCTTACGTCTCGAAGTCAAACCATGGGGTGTTTCAGTACA
TATTATCGAACCTACTTTCTATGCTACTGGAATCTTGGATGAAGAAAATA
TGCATCGTGATTGGCGCAAAGTTTGGGATCAACAACCACAGGCAACACAC
GATGAGATTGGGGAAGAGCAATTCAAGAACTtTGTGTCCTCGTTCTTCAA
TTCCATCAAAATCACTCAAAACATTGGCGAAGTTACCAAGAGAATCCGTC
ACGCATTGCTGGCAAAGTTCCCGAGACGTAGATACATCACAGGACTTGAT
AGTAAACTGTACGCCATTGGATCACACCTTCCGACAGCTTTTGTGGATTG
GATTATCTCTTGTAAGATCGGCATTCTTCATCCAAAGACAACAACGAAGA
AAAGTCAATGAATGGAGGCTTTAGACTTTTCTTGTGAAAACAAATTTATT
AGTTTTTCTGTTATCCTAATTTTTATATATTACCTGATTAATTTCATTGT
GGATCATTGGATTTCAACCGAAgagaagaaaaatgttttggtgACAGGCT
GTGATTCAGGTTTTGGTTTCCAAACAGCTTTAGAATTAAGTGAATCTAAT
TGTAAAGTTTTTGCTGGTTGTTTAACTCAAGATGGTGTCAAACGACTTGA
GAGCAATGCCAGGTTTCGAGGGATGGCTTTTATCATGGACGTGACTAAAG
ACGAGGATGTTCAGAAAGCAAAGGAGGTCATTGAAGAGAATGGAGCTTTG
GATGGTATAGTTAACAATGCTGGTATCGCTATTCATGGATTGATCGAATG
GCAATCTATCGAATTGATGAAGAAAACATTCGAAGTGAATTATTGGGGAA
CCGTTCGTGTTACCAAAGTCATGCTACCATTATTGAAAAAGTCACGGGGT
CGTATCGTCAATGTGACAAGCATGGGAGGACGACTCTCGCCACCCTACAC
TGCCCCTTATTACGGTTCAAAATATGCAGCTGAAGCGTTTTCTGATAGCT
TACGTCTCGAAGTCAAACCATGGGGTGTTTCAGTACATATTATCGAACCT
ACTTTCTATGCTACTGGAATCTTGGATGAAGAAAATATGCATCGTGATTG
GCGCAAAGTTTGGGATCAACAACCACAGGCAACACACGATGAGATTGGGG
AAGAGCAATTCAAGAACTtTGTGTCCTCGTTCTTCAATTCCATCAAAATC
ACTCAAAACATTGGCGAAGTTACCAAGAGAATCCGTCACGCATTGCTGGC
AAAGTTCCCGAGACGTAGATACATCACAGGACTTGATAGTAAACTGTACG
CCATTGGATCACACCTTCCGACAGCTTTTGTGGATTGGATTATCTCTTGT
AAGATCGGCATTCTTCATCCAAAGACAACAACGAAGAAAAGTCAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000118_pilon | genome | sc0000118_pilon:201313..205662 + |
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