MSTRG.14257.6.p1 (mRNA) -

Overview
NameMSTRG.14257.6.p1
Unique NameMSTRG.14257.6.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000117_pilon:1095010..1098700+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14257.6.p1 ID=MSTRG.14257.6.p1|Name=MSTRG.14257.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3691bp|location=Sequence derived from alignment at sc0000117_pilon:1095010..1098700+ (Clytia hemisphaerica_ch_hm2_pilon)
ACGACGTTGATTCAACTGCTTCACCAGTCACCACTAAGTTTGAAGTGGAA
GTTGGTCAACAACTTTACAAATTGATGCGATTTGACGACACCAAAGTCAC
ACCATGGGGTCATTTGACAGGTTGTGGATCTGTCGCTAACATTGAATCGA
TGTGGGCTGCAAGAAACACCAAATTACATCCATTGGCTTTGAAGGATTCT
TGCGCTGACCCTGATTTCCCCGAATTGATCGGTATGAAAATGTGAAATAA
GCGTTTTTCTAATTCAACAATTGAGGCCAAAACAGCTAATTTGGGACAAG
ATATATCTTACATAAGACATTTCAAATCTTTGGAATAGTAGATTCCAATT
TGGTTTTAGTTCATCACCGGTATTCTCAAttcaaaattacattttaagCA
TTCCTCCAATTCGAATCCCTATTATTCAGACGGTTTGGAGTGCAAGGTAT
TTGTACCCTGgtcaacaaaaagaaaagacgtTGAAAGAATGCACAGAATG
GGAACTGTTGAATTTGAGAATCGATGATATTTGTTTTTtgactgatgacg
tcatcaaatgtATCGGAGAGAGAAATCCAGatttcaaaattgacgtcaaa
gcaACCGTTGATAAAGCTTTGGAGGTAAATATTGTACTTTGAATTTTAAT
CCTCCTGCCTGAATGACGGAAAGGTGCCCACTTTGGGCTAAATTTGGAGG
Tgtttggatcactcgttgaccaaaaatgatcaaaaaacggtcaaaatctc
aaagttgattttgtcaaattttagcattttttgactttttggctaaaatc
tcgctggaagactcacttttgatttttttttttgcttgaagctcaatcca
attcctacgagttagaccaaaaatgacgatttctaaatCAAACTTGGCAT
TACAGGGGGATTCGCCTTCCTATACAACCCATGTCTGATATacacgacat
tggcacttaaagggttaaagtagACCCGAATTAAGTTCTGAGGTTTTGCA
GGTTTTTCCCTTTGTTTGTTCGCAAAGCCTTGTCTccaatgaaaaaatca
aaccttcactttttcatttagaaaaattcaccAGTGCAACTTGGCTtagc
agaatttttttaaccgACGACACAAGATAGGTGAACAAAGCACAAAAGAT
GCAACAGTGAGGACATATCCACGAGTCTTTTCACCAGGAACCAACCATTA
TATTCATGGCCGAATAACATTACTCTAATAACATTCACATAAAAGTTGAC
AGCAAAGCTCGTCAAGATTTAGAGAGTAGGTGTTATTACATTTTAACATG
GAAACAGTTAATTTTAAGAAGTCCATATCTACATATATACTGTCTAATTA
CTGTAGAATTTTAGTGACGTAAGATTTCTGTAATATTTTCTCTACCTCAA
AGCTTCTGGGTATCATTTACTGTAAAAGATCTCAGATAGGGATTTTTTAT
TACACGCCTGTCTCActgccccagtggaactttttcctcagtggggataa
aaactcctattaGAATCCCAATGGGTGGGTTTGGAGTGCaacttttaaac
attgaatttcgaatggggataaaatcaaagttcatttcccagtgggactg
aaatttcagggtactTTAGCACCGggaacgaaatttttgccaaattttcc
caGCGGGTCTTTGACGGGGTGTTTTATTTCACGCAACAAAACTAGTAAAC
CTTATTAAAGTAACTTTATCTTACCAACAGTCTGGTGAAGGAATTGGATT
ATGCATTGGAACACAAGATTGCAGTATTCATGGTTGTGGCAGTGATTGGT
TCAACAGAAGAAAGTGCTGTGGATGATATCGCAAGAATCTTGGCTCTAAA
ACCAAAATATGAGGCTAAGGTAAAGCAAATTGAGTGATCCATTTATCATC
ATTGACagctgtgaaattttttttggtttttagatttctgtaattcgatt
atcttttatttttgaaacaccaattttagagactgttcatctaacgtttc
caaaccatcaaaaaagacAAACGATAAATAACTACTAAAAAGCGACAAAG
GACGACTAACCCTAACTATCACTACCTCTACAGATTCACTTCTTTTTGTt
tgtcacgggaattaactacatgtggtttaaaaaacgcaatacagtggaac
ctctaattagcggacaccatcggggaaaggggttagtgtccgctaattag
aagtgtccgcctattagaaacttttgatctcggagctccaattttgaaat
taggccatcccagggtgtcgaaaatacaaagttggggtctaaagtactta
tctgcagacactaggctatagaagaacaagaaaaagtttattaaaacgca
acaaattagttttaacaaataaaaggaaatctagaaatataacaccaaaa
ttgaaaatacaattcgttgaatgggtcaagggaaaactggaaatttgtag
aaataatttgaataataagactaataagtgcttgaaataaaaatatctaa
aaatttttttttttcgattttggacgtctgtgacccgtttgatattcaat
gtccgctaattggagagctaaaatagggttttggccatttcgtgcgaaaa
aatttgtccgctaatcagagggtccgctaattgagtgtccgccttttaga
aacttttttatgaggatttgactagggaACGGCCGGGAAAAAttaaattg
tccgctaatcagaggtttccgccttttagagtatccgttaattagaggtt
ttactgtattacgcatgcgtataagtctctatttgggtgagctggaaaca
gaAGATGAACTAACTCTTTATTCTGGCTAAACTTTACCAATAAGTTATCC
ACTTAATTTTTTCCAGGGTTTGACATTTTCGGTGCACGCAGATGCAGCAT
GGGGCGGATATTTAAATTGTATGACCCACGAAACTGGTGACAAAGAAAGC
AATGTTTATTCCAATTGTCTTCCAACAAAAGCTCATGATTTCGTTCCTGC
TATTCCACTTTCTGATTTTGTCAAGAGACAATATGTCAGTTTGCAATACG
CTGATACAGgtgagaaacttttttgaataacttcatATTGTCAATGATAC
AAGATTAGCATGCGAACATTATTAATCAAGATCAGACAAATTGATGATTT
CTGTAACGGATGAtgataaaaaaaacgaataacACATTGATAACAACCAG
TAAAAATTTAgaccatttttaaatttttcacgtaacgttttcatttttac
atTACAGCAAAGGAGCCAGAACCAACATGCAAAGACAAATACAATTAcgg
aaatcttaaaaaatactGCAGTTACAGTCAATACAAAGATTACATGACAA
ACTATTGCCCGGCTACTTGTGGACTCTGTGGAGAGACACTAGCCTGTGGT
GTTGCTGAAAGACGTGGATCAAAGGCTGATAATCCAATTGTTGGAGGAGA
GGATGCAAAGAAGGGGCACTACCCATGGCAAGCGGCAATTTATTTCGATG
GAAGTTTCTTATGCGGTGGTTCCCTTATCGATAataaacatttattttct
tatctacgaaacgaaaataaattaatttatttcctAATTCTTCTAAAATC
TTGTCAAAGAtccaatgaaaattgaaaacacgATGAAACAACAACCGAAA
TCTCGATTTCGAGACAGATTTAATGTATTCTAGTAGTAGTA

Coding sequence (CDS) from alignment at sc0000117_pilon:1095010..1098700+

>MSTRG.14257.6.p1 ID=MSTRG.14257.6.p1|Name=MSTRG.14257.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1953bp|location=Sequence derived from alignment at sc0000117_pilon:1095010..1098700+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGTTGTGGCAGTGATTGGTTCAACAGAAGAAAGTGCTGTGGATGATAT
CGCAAGAATCTTGGCTCTAAAACCAAAATATGAGGCTAAGGGTTTGACAT
TTTCGGTGCACGCAGATGCAGCATGGGGCGGATATTTAAATTGTATGACC
CACGAAACTGGTGACAAAGAAAGCAATGTTTATTCCAATTGTCTTCCAAC
AAAAGCTCATGATTTCGTTCCTGCTATTCCACTTTCTGATTTTGTCAAGA
GACAATATGTCAGTTTGCAATACGCTGATACAGCAAAGGAGCCAGAACCA
ACATGCAAAGACAAATACAATTAcggaaatcttaaaaaatactGCAGTTA
CAGTCAATACAAAGATTACATGACAAACTATTGCCCGGCTACTTGTGGAC
TCTGTGGAGAGACACTAGCCTGTGGTGTTGCTGAAAGACGTGGATCAAAG
GCTGATAATCCAATTGTTGGAGGAGAGGATGCAAAGAAGGGGCACTACCC
ATGGCAAGCGGCAATTTATTTCGATGGAAGTTTCTTATGCGGTGGTTCCC
TTATCGATAataaacatttattttcttatctacgaaacgaaaataaatta
atttatttcctAATTCTTCTAAAATCTTGTCAAAGAtccaatgaaaattg
aATGGTTGTGGCAGTGATTGGTTCAACAGAAGAAAGTGCTGTGGATGATA
TCGCAAGAATCTTGGCTCTAAAACCAAAATATGAGGCTAAGGGTTTGACA
TTTTCGGTGCACGCAGATGCAGCATGGGGCGGATATTTAAATTGTATGAC
CCACGAAACTGGTGACAAAGAAAGCAATGTTTATTCCAATTGTCTTCCAA
CAAAAGCTCATGATTTCGTTCCTGCTATTCCACTTTCTGATTTTGTCAAG
AGACAATATGTCAGTTTGCAATACGCTGATACAGCAAAGGAGCCAGAACC
AACATGCAAAGACAAATACAATTAcggaaatcttaaaaaatactGCAGTT
ACAGTCAATACAAAGATTACATGACAAACTATTGCCCGGCTACTTGTGGA
CTCTGTGGAGAGACACTAGCCTGTGGTGTTGCTGAAAGACGTGGATCAAA
GGCTGATAATCCAATTGTTGGAGGAGAGGATGCAAAGAAGGGGCACTACC
CATGGCAAGCGGCAATTTATTTCGATGGAAGTTTCTTATGCGGTGGTTCC
CTTATCGATAataaacatttattttcttatctacgaaacgaaaataaatt
aatttatttcctAATTCTTCTAAAATCTTGTCAAAGAtccaatgaaaatt
gaATGGTTGTGGCAGTGATTGGTTCAACAGAAGAAAGTGCTGTGGATGAT
ATCGCAAGAATCTTGGCTCTAAAACCAAAATATGAGGCTAAGGGTTTGAC
ATTTTCGGTGCACGCAGATGCAGCATGGGGCGGATATTTAAATTGTATGA
CCCACGAAACTGGTGACAAAGAAAGCAATGTTTATTCCAATTGTCTTCCA
ACAAAAGCTCATGATTTCGTTCCTGCTATTCCACTTTCTGATTTTGTCAA
GAGACAATATGTCAGTTTGCAATACGCTGATACAGCAAAGGAGCCAGAAC
CAACATGCAAAGACAAATACAATTAcggaaatcttaaaaaatactGCAGT
TACAGTCAATACAAAGATTACATGACAAACTATTGCCCGGCTACTTGTGG
ACTCTGTGGAGAGACACTAGCCTGTGGTGTTGCTGAAAGACGTGGATCAA
AGGCTGATAATCCAATTGTTGGAGGAGAGGATGCAAAGAAGGGGCACTAC
CCATGGCAAGCGGCAATTTATTTCGATGGAAGTTTCTTATGCGGTGGTTC
CCTTATCGATAataaacatttattttcttatctacgaaacgaaaataaat
taatttatttcctAATTCTTCTAAAATCTTGTCAAAGAtccaatgaaaat
tga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14257MSTRG.14257Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14257.6.p1MSTRG.14257.6.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14257.6.p1.exon1MSTRG.14257.6.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14257.6.p1.exon2MSTRG.14257.6.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14257.6.p1.exon3MSTRG.14257.6.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14257.6.p1.exon4MSTRG.14257.6.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14257.6.p1.exon5MSTRG.14257.6.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14257.6.p1.exon6MSTRG.14257.6.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117_pilongenomesc0000117_pilon:1095010..1098700 +