MSTRG.14254.1.p1 (mRNA) -

Overview


Name	MSTRG.14254.1.p1
Unique Name	MSTRG.14254.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000117_pilon:1022127..1024604-
coding sequence from alignment at sc0000117_pilon:1022127..1024604-

mRNA from alignment at sc0000117_pilon:1022127..1024604-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.14254.1.p1 ID=MSTRG.14254.1.p1|Name=MSTRG.14254.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2478bp|location=Sequence derived from alignment at sc0000117_pilon:1022127..1024604- (Clytia hemisphaerica_ch_hm2_pilon)
TTATTTTTGTCACACGATTTTATCCAATAATATCTGAAGAAATGCTCAGG
TCACAATAAGTTGCTTTACCTTTATCCAGCATTTGTTTACGTTTATTGCG
TAATGCATGGGAAATATGTGCGAAACTCATTACAAAGTATTTCTACATCA
CCTGACTCAAGCTTTTGATGACGTCATCATGTGAGAATTTAAGTCAACTC
ATATCTTGGAAATCGATTTATTTGGAGTTTGCATCAAAAAGTTCTCACCT
TAAAACATTGAGTGTGGTGAGAAACGCATTTTCAATAAACGGTTGGTTAG
TTGGTGCAGGTGAAGATAGCCCAACGAGAAACGCATTCAAGGTAAGTATT
TTCATAAATTCTCTTGCTTTTGTTCTAGAAACACCATCACTTTACGATTG
GGCCTTCCCATCCTTTCCTGAGTGTCCGTCAAAGTAGCGTTTGCAACTCG
TGTTTGAAATTTAGCCTTACCTTATGTCTTGAATATCCATCACTCTGGGT
TTAGAATCAAGCCTTGTTGTCTAATTCAGAGTACCCATCACCCTAAAGTT
GTGCCCAGTGCTTTAGTACGTTATACAATTTCAATTTGCTTGCTCTTGTA
TTAGAAACACGAAGATGATTTCTATAGTATAGAATTTGGCTTATTTCCAT
TGCAAGCTTTAGCTTTTCTCGATTTTTTTAATAATTCTTCGAGGGACTTT
TAAATGGTGAGCCTAATATTAGTTGTTTTTATTGGTTATGTTTCATTTTT
AGGTAAAATGGAGAAAACGAAATTGCTGAAGAAAGTTTCCACAGATGAGA
TTCTTGAACAAATCGGAGAATTCGGTAGATTCCAATGGATATTGGATGGT
ATATTTTGCATCATGCTTTTACCAGCCACCTTTCAAACACTCATCATGTA
CTTTGCAGCGCTGCAACCAGAATGGAGATGCGTGGCAAACAGTACCATTT
GTAATCTCAATGGTACTTTTTCAAGTGAGAACGAATTCCGTTGTGGCATC
CCAAGATCTGAATGGGAATTCACTCAACCCAAAGATTACTCCATCGTTAC
TGAATATGATATTTACTGCGATACAGAGTGGATCGTTAATCTCTCGACAT
CTATCTTATTTTTGGGTTGGTCGGTAGGTTCCATGATATTGGGTTGGCTG
GCGGACAACTACGGTCGCAAAACAGTCCTCTTCCCGTCTCTGTTCATCAC
GCTGCTGATCGGTGCTATATCACCCTTCGTACCGAACATTTTCATCTTCA
TCGGCTGTCGGTTTGTTGTTGGACTCTTCCTCCCTGGTACTGCTCTCCAG
ATGTTCATCATCATATCGGAGTTGGTTGGTGGAAAGCATCGACCGAAAGC
CGGCCTCATTCTCTGGATCTTCCTCACTGTCTCATTCTGCTTGCTTGGTA
TCAAGGCCTACTTCATACGACAATGGAAGATGTTGTTTGTAGTGTGCACG
GTACCTTATGTTTTCATTTTCGCTTTCTACAAATTCGTTCCAGAATCGGT
CCGTTGGCTTCGACTGCATGGAAAATATAGGGAGGCCCTGAACACATTGG
AAAGAATTGCAGCTTGGAATGGGACCAGCCTTGACAAGAATATATCATTG
GATGATCACTTGTTTCAGGTCCACGTGACTCGCCCCAAACCTCTATTTTT
TTTCTGTAGAGGAAATTTACTACAAAAGTCTTTCATCCAAGGATATGCTT
GGTTGGTCAGTGGAATGATATTCTATGGATTTTCTTTATCGGCTGATCAG
CTTGGAGGATCTCTCTATCTCAATTTCATCCTGGTCAGCTTGGTTGAACT
TCCAGGAATTTGCATGGCGCTCGCTTCTTGTGAGCGTTTCGGACGTAAAA
GGACAGTCACCATTCCGATGCTGATTGGTGGCTTAGTTTGTGGAGCTATC
CCTATCTTTGAATCGGGGTTAGTGGCATCGAATCTTGGTAAAGTTGTCCT
CGCTCTCATTGGGAAGATGTTCATTACGACTAGCTTCAACTCCATCTACA
CATGGTCTGCCGAGTTGTATCCTACAGAATTGCGCGCAGAAGGTTTGGGT
TTTTGTCAAGTGACGAGCCGAATAGGAGCTGCTCTCGCGCCTTGGGTTGT
GAAAGGGTTTCGTGTGTTGCATCAAAGCTCACCATTTCTGGTAATGTCAG
CTCTAGCGATCGTATCTGCAGTCACCTTGTTATTTTTACCGGAAACGAAA
GGCGAAGATCTTTTGGAAGACGTCAAAGATCTGAAGGAAATGGATGAAAA
TGGAAATGTTTATAAGGAAATCGAAATTTGAAGACGAGAAAAGAGAAATT
TGTAATGTTGTCATGACTTTAATGTCATTAACAACTTCTGTTGAACAATA
TATTCAAGGTTCATGGGAGAGAAGTGTACTTTTAGACTTTTATTTTTTGT
ACATATCGGAATCAACTTTACTTTTCAATAACATAGCATTTTTTTAGAAA
TACCGTATTACTTCGAATGAACGCCCCC

Coding sequence (CDS) from alignment at sc0000117_pilon:1022127..1024604-

>MSTRG.14254.1.p1 ID=MSTRG.14254.1.p1|Name=MSTRG.14254.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000117_pilon:1022127..1024604- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAGAAAACGAAATTGCTGAAGAAAGTTTCCACAGATGAGATTCTTGA
ACAAATCGGAGAATTCGGTAGATTCCAATGGATATTGGATGGTATATTTT
GCATCATGCTTTTACCAGCCACCTTTCAAACACTCATCATGTACTTTGCA
GCGCTGCAACCAGAATGGAGATGCGTGGCAAACAGTACCATTTGTAATCT
CAATGGTACTTTTTCAAGTGAGAACGAATTCCGTTGTGGCATCCCAAGAT
CTGAATGGGAATTCACTCAACCCAAAGATTACTCCATCGTTACTGAATAT
GATATTTACTGCGATACAGAGTGGATCGTTAATCTCTCGACATCTATCTT
ATTTTTGGGTTGGTCGGTAGGTTCCATGATATTGGGTTGGCTGGCGGACA
ACTACGGTCGCAAAACAGTCCTCTTCCCGTCTCTGTTCATCACGCTGCTG
ATCGGTGCTATATCACCCTTCGTACCGAACATTTTCATCTTCATCGGCTG
TCGGTTTGTTGTTGGACTCTTCCTCCCTGGTACTGCTCTCCAGATGTTCA
TCATCATATCGGAGTTGGTTGGTGGAAAGCATCGACCGAAAGCCGGCCTC
ATTCTCTGGATCTTCCTCACTGTCTCATTCTGCTTGCTTGGTATCAAGGC
CTACTTCATACGACAATGGAAGATGTTGTTTGTAGTGTGCACGGTACCTT
ATGTTTTCATTTTCGCTTTCTACAAATTCGTTCCAGAATCGGTCCGTTGG
CTTCGACTGCATGGAAAATATAGGGAGGCCCTGAACACATTGGAAAGAAT
TGCAGCTTGGAATGGGACCAGCCTTGACAAGAATATATCATTGGATGATC
ACTTGTTTCAGGTCCACGTGACTCGCCCCAAACCTCTATTTTTTTTCTGT
AGAGGAAATTTACTACAAAAGTCTTTCATCCAAGGATATGCTTGGTTGGT
CAGTGGAATGATATTCTATGGATTTTCTTTATCGGCTGATCAGCTTGGAG
GATCTCTCTATCTCAATTTCATCCTGGTCAGCTTGGTTGAACTTCCAGGA
ATTTGCATGGCGCTCGCTTCTTGTGAGCGTTTCGGACGTAAAAGGACAGT
CACCATTCCGATGCTGATTGGTGGCTTAGTTTGTGGAGCTATCCCTATCT
TTGAATCGGGGTTAGTGGCATCGAATCTTGGTAAAGTTGTCCTCGCTCTC
ATTGGGAAGATGTTCATTACGACTAGCTTCAACTCCATCTACACATGGTC
TGCCGAGTTGTATCCTACAGAATTGCGCGCAGAAGGTTTGGGTTTTTGTC
AAGTGACGAGCCGAATAGGAGCTGCTCTCGCGCCTTGGGTTGTGAAAGGG
TTTCGTGTGTTGCATCAAAGCTCACCATTTCTGGTAATGTCAGCTCTAGC
GATCGTATCTGCAGTCACCTTGTTATTTTTACCGGAAACGAAAGGCGAAG
ATCTTTTGGAAGACGTCAAAGATCTGAAGGAAATGGATGAAAATGGAAAT
GTTTATAAGGAAATCGAAATTTGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.14254	MSTRG.14254	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14254.1.p1	MSTRG.14254.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.14254.1.p1.exon2	MSTRG.14254.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.14254.1.p1.exon1	MSTRG.14254.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000117_pilon	genome	sc0000117_pilon:1022127..1024604 -

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MSTRG.14254.1.p1 (mRNA) -