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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000117_pilon:808374..811862+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.14226.2.p1 ID=MSTRG.14226.2.p1|Name=MSTRG.14226.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3489bp|location=Sequence derived from alignment at sc0000117_pilon:808374..811862+ (Clytia hemisphaerica_ch_hm2_pilon)
TCGACGATGACTTGTTATGGCCAATGAGAGCTCGTGTCCGATGTTCAATT
GTGACAAATCTAACGGACGATATAGAGCTATAGTCCGGTAGAATTAGCCT
GAGACCTGGACAAAATTCCCaacaagctgaaattttgcacagaggtccCC
AATAGGATACTTGAccaccaaaaaaaaagccccatcGATTCGGACatggg
aaaactttttacgGACGATTTAATTTCGGACACGTCcgaaaaataaactt
gaaaaaaaagttctcaaAATATGCAAGTgtcatatatcaaaagaaagata
atttcaatacgaacaaaaaaattgCCTACAGGAAAGCCTGGAAATCATCT
CACAAAGAGTTAGGAGACCTCGAATACATCAtggttttcatcttcttttt
atattatgtttaaattctttaaaattactATTATGTTTAAGTTTGTATGA
GTATGATTTTTAGGTTCAAAATACGATTTTAAGAGATTGAACACTCACAA
AGatctttttcattatttttgatgCCATTGCAGTGTAAatatgtaaacat
tcgaatgcGAATAAGTGTTATTTACATTCATCAATTCATCAACTTGACAA
CTCCTGAAaggtatatttttcattttttgaaaagtaactTTTAACATGAT
CTGTGTATATATTTCATCTGTTTTTATTTAgagtaaaaatgaaagaaata
ttaaaagtttaaatAAAAGTGGTGTATTGTAGAATGGCTACATTGGGCAG
AGTATGCATTTTATGTGAAGAAGATGTTCAGCCAGACAATCTAGTTGAAG
TCAAGAAAAAAGGCTTCGACAGACTCGTTCAAGTTGCCAAACAAAGAAAG
CTCGAAGATTTGCACAGGTTTTTATATCTCAGTAGTTTTAAGAAAAGGCC
CAGGAAGTGTGTAAATTAGATTCATTAGAACCTTAGAAGTATAGAGTTTT
CGACAGTCCCTTTTAATAGTTTACTACAAGGTTGGGTTTAGGTTTTTTAA
GGTTCATCTTCTTCCGATGTTTATCAGCATAGTAATGTCAGGATTTTTTA
ACCTGAGAACAGATGTGGAGTTTTCTTAATgcgacacgctgaagctctaa
agatcgctgaaaactaacatctgaggaaaatggtcatgtttctatgaaaa
aatttcagtcagaaaTTTGTCTTGTGCCAAAAGCGCCAATATTAAAAACT
TGCTGAGATGCAGATGGCATATTCTTCAGATTGAATATTTTCGCCCacgt
ctttagagctttagcgtactgAGCCAGATAATACggaatctgttatcagg
ttaggatTTTTGAACAAGGGTAGATCAAATAGGTACTCTTGAGaagaaaa
ttttagttttaaggCTCATAACCAttacggctagttcgaaacacagATCA
CAGGTCATAGTTCACTTCCTCATCTAAAACATACTTTATACGAGTATGTT
CTAATACCACTTATTGTATTAGAACATACGTTATAGACATTTCTAACAAT
AACTATGATTTGTTAATCTTATTTACAGCAACTTGAAGGAACGGGAGGTT
GGAAACGTCTACGTCCATCATGACTGTAGGAgaaagtttgtggacaaaag
GAAAATGGATGATGGTCATATTACCGTCAAGAAGCGGTTGAGATCATCAG
TTGGAGCGATGGGTTCATTCAACTGGAAGTTGCATTGCATTTACTGCGGT
GAACAAAAAGATGAAAAGCGGAAAAGTAATGAAGTCAGCGAGGTGGAAAC
AATTCCGATCAAAAGAAGCATCCTAGCACAATGCGATGCAAGGAATGATG
AATGGGGAGACTTAGTCCGTGACCGTGTATTACCATCCATCGATATTGTA
GCAGACGAAGGATTCTATCATCGCTCGTGTAtggaaaagttttttacaaT
CAAGTCAGGAAAGAAATCTGGACGTCCTGTTAACGAATTGATGCAGGATA
GTTTTGATAAACTGTGTGAATGGATGGAAGGTGCAAGCGAACATGAGCCA
CTTCTGCTAAAGGAAGTATATGCAAAGCTTGTAGAAATGAGTGGAGACTC
TAACAGCTGTTACAGTTCTAAGCAGCTGCGAAGAAAGCTGAAGGATCGTT
ACCAAGatcatttaatatttattgaaGAAGATGGAAGATCGAGTATGTTG
TGCTTTAAAGACTTTGCTTGGTTTATAATGAACGACTTCAAGAAAAACCA
TTCCCCGACTCCGGGTTCAATAATGACAGCAGCTGCAAAAATAATAAAGT
CAGAATTCCGTCAAATGGCATCCAACAAGTCTCACTATCCTGACATAGAA
AAGATTACGGACATGGAATACTTGAAGAAATGGATCCCAGAAAGTTTACT
TGGGCTATTAAAGGAGCTCATCCCATCAGAACTAAAGCAAGTCAGCATTG
GCCAATGTATATCACAATCAGCTAAACCAAGGTCAATGTTGGCACCAATT
CCTTTTGGCATTGGAGTAGATGTTGATAGATCTTTCGAATCCAAATGGTT
CATAAACCACCTGGCTAAACTTGGCTTCTCCGTTTCATATGATGAAGTAA
CAAACTTTAAGAGGTCAGCTGCTTCAGCTTCTGAAGGTGATGGTCCAGTT
GAAGGTGGTGGTCCAGTTGAAGGTGGTGTTTCCGTTGAAGGTGATGGTCC
AGCCGAAGGTGATGGTCCAGCCGAAGGTGGTGTTCCCGTTGAAGGTGGTG
GTCTAGTTGAaggtggtgtttccgttgaaggtggtggtccagttgaaggt
ggtgttttcgttgaaggtggtggtCCAGTTGAAGGTCGTGTTTCCGTTGA
AGGTGGTGTTTCCGTTGAAGGTGGTGTTCCCGTTGAAGGTCGTGTTTCCG
TTGAAGGTGGTGTTTCCGTTGAAGGTGGTGTTCCCGTTGAAGCTGGTGTT
TCCGCAGGAACAATAAACAACTTTTTTGAGCAATATGCAGCCGATAACAT
GGATAATAATCTGAGAACTCTAACAGGAAAGGGTACGTTTCACGGGATGG
GGATAATCTCCATGTCTACAAATGGTGCAAAAACATTCCAAGCAATCAGA
CGTTTGaagaaaaacgagaaaaaacaAACGACGGGATCCGTACCAATCAT
TCCTTATTTTGGATCTCATGAACGTGGCTTGTCAAAGCTAAGATTCAAAA
AGATTAAAGATCTTTCTGAGAGTTTCAAAGATGACGTCATGCACTATTAC
CAAGAGAAGACCATCGACCTTGTATGGCAATTAGCATGGCACTTTAAAAC
CCGAGAATCTGCTAGACCGAATTGGCAAGGATTTATGCAGACTGCGGCAG
TACCAGAAAATAGCGACAATCCCGTGTCAAAGTCGTCCATAACATTCTTA
CCCATCATCGACCTCAGTTCATCTGACGAAACTTGCTTATACTCAACACT
TCTATTCATTAAAGACGAAGCAAAGAAGCACAAAATTGAAGTACCCTGTA
TCACCTTTGATCAGCCTCTATGGCAGAAAGCTATCGGGA Coding sequence (CDS) from alignment at sc0000117_pilon:808374..811862+ >MSTRG.14226.2.p1 ID=MSTRG.14226.2.p1|Name=MSTRG.14226.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5166bp|location=Sequence derived from alignment at sc0000117_pilon:808374..811862+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGATGGTCATATTACCGTCAAGAAGCGGTTGAGATCATCAGTTGG
AGCGATGGGTTCATTCAACTGGAAGTTGCATTGCATTTACTGCGGTGAAC
AAAAAGATGAAAAGCGGAAAAGTAATGAAGTCAGCGAGGTGGAAACAATT
CCGATCAAAAGAAGCATCCTAGCACAATGCGATGCAAGGAATGATGAATG
GGGAGACTTAGTCCGTGACCGTGTATTACCATCCATCGATATTGTAGCAG
ACGAAGGATTCTATCATCGCTCGTGTAtggaaaagttttttacaaTCAAG
TCAGGAAAGAAATCTGGACGTCCTGTTAACGAATTGATGCAGGATAGTTT
TGATAAACTGTGTGAATGGATGGAAGGTGCAAGCGAACATGAGCCACTTC
TGCTAAAGGAAGTATATGCAAAGCTTGTAGAAATGAGTGGAGACTCTAAC
AGCTGTTACAGTTCTAAGCAGCTGCGAAGAAAGCTGAAGGATCGTTACCA
AGatcatttaatatttattgaaGAAGATGGAAGATCGAGTATGTTGTGCT
TTAAAGACTTTGCTTGGTTTATAATGAACGACTTCAAGAAAAACCATTCC
CCGACTCCGGGTTCAATAATGACAGCAGCTGCAAAAATAATAAAGTCAGA
ATTCCGTCAAATGGCATCCAACAAGTCTCACTATCCTGACATAGAAAAGA
TTACGGACATGGAATACTTGAAGAAATGGATCCCAGAAAGTTTACTTGGG
CTATTAAAGGAGCTCATCCCATCAGAACTAAAGCAAGTCAGCATTGGCCA
ATGTATATCACAATCAGCTAAACCAAGGTCAATGTTGGCACCAATTCCTT
TTGGCATTGGAGTAGATGTTGATAGATCTTTCGAATCCAAATGGTTCATA
AACCACCTGGCTAAACTTGGCTTCTCCGTTTCATATGATGAAGTAACAAA
CTTTAAGAGGTCAGCTGCTTCAGCTTCTGAAGGTGATGGTCCAGTTGAAG
GTGGTGGTCCAGTTGAAGgtggtgtttccgttgaaggtggtggtccagtt
gaaggtggtgttttcgttgaaggtggtggtCCAGTTGAAGGTCGTGTTTC
CGTTGAAGGTGGTGTTTCCGTTGAAGCTGGTGTTTCCGCAGGAACAATAA
ACAACTTTTTTGAGCAATATGCAGCCGATAACATGGATAATAATCTGAGA
ACTCTAACAGGAAAGGGTACGTTTCACGGGATGGGGATAATCTCCATGTC
TACAAATGGTGCAAAAACATTCCAAGCAATCAGACGTTTGaagaaaaacg
agaaaaaacaAACGACGGGATCCGTACCAATCATTCCTTATTTTGGATCT
CATGAACGTGGCTTGTCAAAGCTAAGATTCAAAAAGATTAAAGATCTTTC
TGAGAGTTTCAAAGATGACGTCATGCACTATTACCAAGAGAAGACCATCG
ACCTTGTATGGCAATTAGCATGGCACTTTAAAACCCGAGAATCTGCTAGA
CCGAATTGGCAAGGATTTATGCAGACTGCGGCAGTACCAGAAAATAGCGA
CAATCCCGTGTCAAAGTCGTCCATAACATTCTTACCCATCATCGACCTCA
GTTCATCTGACGAAACTTGCTTATACTCAACACTTCTATTCATTAAAGAC
GAAGCAAAGAAGCACAAAATTGAAGTACCCTGTATCACCTTTGATCAGCC
TCTATGGCAGAAAGCTATCGGGATGGATGATGGTCATATTACCGTCAAGA
AGCGGTTGAGATCATCAGTTGGAGCGATGGGTTCATTCAACTGGAAGTTG
CATTGCATTTACTGCGGTGAACAAAAAGATGAAAAGCGGAAAAGTAATGA
AGTCAGCGAGGTGGAAACAATTCCGATCAAAAGAAGCATCCTAGCACAAT
GCGATGCAAGGAATGATGAATGGGGAGACTTAGTCCGTGACCGTGTATTA
CCATCCATCGATATTGTAGCAGACGAAGGATTCTATCATCGCTCGTGTAt
ggaaaagttttttacaaTCAAGTCAGGAAAGAAATCTGGACGTCCTGTTA
ACGAATTGATGCAGGATAGTTTTGATAAACTGTGTGAATGGATGGAAGGT
GCAAGCGAACATGAGCCACTTCTGCTAAAGGAAGTATATGCAAAGCTTGT
AGAAATGAGTGGAGACTCTAACAGCTGTTACAGTTCTAAGCAGCTGCGAA
GAAAGCTGAAGGATCGTTACCAAGatcatttaatatttattgaaGAAGAT
GGAAGATCGAGTATGTTGTGCTTTAAAGACTTTGCTTGGTTTATAATGAA
CGACTTCAAGAAAAACCATTCCCCGACTCCGGGTTCAATAATGACAGCAG
CTGCAAAAATAATAAAGTCAGAATTCCGTCAAATGGCATCCAACAAGTCT
CACTATCCTGACATAGAAAAGATTACGGACATGGAATACTTGAAGAAATG
GATCCCAGAAAGTTTACTTGGGCTATTAAAGGAGCTCATCCCATCAGAAC
TAAAGCAAGTCAGCATTGGCCAATGTATATCACAATCAGCTAAACCAAGG
TCAATGTTGGCACCAATTCCTTTTGGCATTGGAGTAGATGTTGATAGATC
TTTCGAATCCAAATGGTTCATAAACCACCTGGCTAAACTTGGCTTCTCCG
TTTCATATGATGAAGTAACAAACTTTAAGAGGTCAGCTGCTTCAGCTTCT
GAAGGTGATGGTCCAGTTGAAGGTGGTGGTCCAGTTGAAGgtggtgtttc
cgttgaaggtggtggtccagttgaaggtggtgttttcgttgaaggtggtg
gtCCAGTTGAAGGTCGTGTTTCCGTTGAAGGTGGTGTTTCCGTTGAAGCT
GGTGTTTCCGCAGGAACAATAAACAACTTTTTTGAGCAATATGCAGCCGA
TAACATGGATAATAATCTGAGAACTCTAACAGGAAAGGGTACGTTTCACG
GGATGGGGATAATCTCCATGTCTACAAATGGTGCAAAAACATTCCAAGCA
ATCAGACGTTTGaagaaaaacgagaaaaaacaAACGACGGGATCCGTACC
AATCATTCCTTATTTTGGATCTCATGAACGTGGCTTGTCAAAGCTAAGAT
TCAAAAAGATTAAAGATCTTTCTGAGAGTTTCAAAGATGACGTCATGCAC
TATTACCAAGAGAAGACCATCGACCTTGTATGGCAATTAGCATGGCACTT
TAAAACCCGAGAATCTGCTAGACCGAATTGGCAAGGATTTATGCAGACTG
CGGCAGTACCAGAAAATAGCGACAATCCCGTGTCAAAGTCGTCCATAACA
TTCTTACCCATCATCGACCTCAGTTCATCTGACGAAACTTGCTTATACTC
AACACTTCTATTCATTAAAGACGAAGCAAAGAAGCACAAAATTGAAGTAC
CCTGTATCACCTTTGATCAGCCTCTATGGCAGAAAGCTATCGGGATGGAT
GATGGTCATATTACCGTCAAGAAGCGGTTGAGATCATCAGTTGGAGCGAT
GGGTTCATTCAACTGGAAGTTGCATTGCATTTACTGCGGTGAACAAAAAG
ATGAAAAGCGGAAAAGTAATGAAGTCAGCGAGGTGGAAACAATTCCGATC
AAAAGAAGCATCCTAGCACAATGCGATGCAAGGAATGATGAATGGGGAGA
CTTAGTCCGTGACCGTGTATTACCATCCATCGATATTGTAGCAGACGAAG
GATTCTATCATCGCTCGTGTAtggaaaagttttttacaaTCAAGTCAGGA
AAGAAATCTGGACGTCCTGTTAACGAATTGATGCAGGATAGTTTTGATAA
ACTGTGTGAATGGATGGAAGGTGCAAGCGAACATGAGCCACTTCTGCTAA
AGGAAGTATATGCAAAGCTTGTAGAAATGAGTGGAGACTCTAACAGCTGT
TACAGTTCTAAGCAGCTGCGAAGAAAGCTGAAGGATCGTTACCAAGatca
tttaatatttattgaaGAAGATGGAAGATCGAGTATGTTGTGCTTTAAAG
ACTTTGCTTGGTTTATAATGAACGACTTCAAGAAAAACCATTCCCCGACT
CCGGGTTCAATAATGACAGCAGCTGCAAAAATAATAAAGTCAGAATTCCG
TCAAATGGCATCCAACAAGTCTCACTATCCTGACATAGAAAAGATTACGG
ACATGGAATACTTGAAGAAATGGATCCCAGAAAGTTTACTTGGGCTATTA
AAGGAGCTCATCCCATCAGAACTAAAGCAAGTCAGCATTGGCCAATGTAT
ATCACAATCAGCTAAACCAAGGTCAATGTTGGCACCAATTCCTTTTGGCA
TTGGAGTAGATGTTGATAGATCTTTCGAATCCAAATGGTTCATAAACCAC
CTGGCTAAACTTGGCTTCTCCGTTTCATATGATGAAGTAACAAACTTTAA
GAGGTCAGCTGCTTCAGCTTCTGAAGGTGATGGTCCAGTTGAAGGTGGTG
GTCCAGTTGAAGgtggtgtttccgttgaaggtggtggtccagttgaaggt
ggtgttttcgttgaaggtggtggtCCAGTTGAAGGTCGTGTTTCCGTTGA
AGGTGGTGTTTCCGTTGAAGCTGGTGTTTCCGCAGGAACAATAAACAACT
TTTTTGAGCAATATGCAGCCGATAACATGGATAATAATCTGAGAACTCTA
ACAGGAAAGGGTACGTTTCACGGGATGGGGATAATCTCCATGTCTACAAA
TGGTGCAAAAACATTCCAAGCAATCAGACGTTTGaagaaaaacgagaaaa
aacaAACGACGGGATCCGTACCAATCATTCCTTATTTTGGATCTCATGAA
CGTGGCTTGTCAAAGCTAAGATTCAAAAAGATTAAAGATCTTTCTGAGAG
TTTCAAAGATGACGTCATGCACTATTACCAAGAGAAGACCATCGACCTTG
TATGGCAATTAGCATGGCACTTTAAAACCCGAGAATCTGCTAGACCGAAT
TGGCAAGGATTTATGCAGACTGCGGCAGTACCAGAAAATAGCGACAATCC
CGTGTCAAAGTCGTCCATAACATTCTTACCCATCATCGACCTCAGTTCAT
CTGACGAAACTTGCTTATACTCAACACTTCTATTCATTAAAGACGAAGCA
AAGAAGCACAAAATTGAAGTACCCTGTATCACCTTTGATCAGCCTCTATG
GCAGAAAGCTATCGGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000117_pilon | genome | sc0000117_pilon:808374..811862 + |
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