MSTRG.14163.6.p1 (mRNA) -

Overview
NameMSTRG.14163.6.p1
Unique NameMSTRG.14163.6.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000117_pilon:141851..146405+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14163.6.p1 ID=MSTRG.14163.6.p1|Name=MSTRG.14163.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4555bp|location=Sequence derived from alignment at sc0000117_pilon:141851..146405+ (Clytia hemisphaerica_ch_hm2_pilon)
GCCTTGTTCAAACTTTCAGCAtgatcataattttttttgaattcacgGAT
AAAATTATCGAAAAAGTCTTTAAAGTTTTGCAACAGAAAGGTTTTAGTCA
AATTCTCTTTGGAGAATATTTCATGGTttaagaaatctcaaaatctgCTT
GCTTATAGTACACTGATCTGACCACGTGCCAAATTCTGCATAGTTTTAAG
ACTTTTATGAataatgataatatttttcaatttcaggctcaaatttttga
agagaaatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGA
AGATGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGAC
AGACGAACAGTATGGTAaggctacacgctttttttataagaaccatgctt
ttccatttcatcatggatactCTTAATTTTTGAGGGGAAAATTATCCTAA
ATTACGGTATTCTTGGATTAGGATTCAAATTTAACTTCAATTTAACATGA
AATACATAGCTGAAGCATAAACTGGCACTTTTGTGAAAGCCTTGAGCTTT
ATAGATGGGTAATTGGCGATTAAcagttaaaaatgctctaaaaactaaaa
atggcattcttaggttccatgatggtgatattcttacatactatattctt
aaatttttcgcCAATTTCACTATAAATATTctgagtatattcttataaaa
agagtgcGTGTATTTAATGAAATAAccattaaagtctattcacgataagt
gtgcactcttttttcttttacctataacttttgaaggaattctttaatat
ttataaatttggtatcattggaaagatattagtgagtggaacaatttgaa
ataaaaaaatctttagaaaagttctaaaaatgaagatgaaaatgaagaag
aaaaatataaaaatcttgtagaaaagtgctatgactataattttcactga
agtgaattcttaattgtcgaacgtcatcactgtgaaaaaatttctcaaaa
ataatcattcaatcaaaagatatcaaacaaagttataagctgattgacgt
caaaaaacgatgttttctgctgttttttagggtcaatcacttattaactt
tgtatcataactttatcttgaataaatattttagtgaaatttcttcccag
tgatgacctcctaagatcaaagaatctctccagcgaaaatgaaagttata
ctgtagcacttttctacaagatcttcatttttttcttctttattttcatc
ttcgtttttagaatttttttcaaaacttttttatttcaaattgttccact
cacaaatatctctccaacgataccaaatttataaaaattgaagatttccT
TCAAaggttataggtaaaagaaaaaagagtgcacacttatcatgaacaga
ctttagataggaaaagaaacttttggtcaattcaaaattttaagccaCTC
TTTCTCGatcaataatttttgaattagctattttttccaactaattttgt
taagaaaaaaatttccttcgcAAAGCAAAATCCTTTAATTGTGTAGCCTA
AATtcttaaatattcttaaataGCTTTTGATAAAGTAGCCGCTCGTTAAA
ATTTGTATTCACTTCCTCTAAAAACTAGTTGACACGACATGAGGTAATAT
ACCTTAAGAACTTTTCTCGAGGTGGAGAAAACTTTTACTTATTGGTAATT
TGGAATTTTAGATGCTACCAAGGACCATGTTTATTAGCGAGTgcctcact
aaaaaccgagaTTTTTTATCCCGTtgattgcgtagaaaaaacgcgggtga
cgtctagtataggctacatGTTTATCAGAATATTTTCGTTTATAGAAATC
ACACGAAATGGACCGCGATGATGTCGATGCTGGAGGAAGGGAGAAATCTA
GCCTTGGTATTATTCTGAATGAGCTAGACCGTGAGATCAAAATGGCTCCA
ACAGTTGCCGAATTCGAAATGACGGAACCAATGAAAGCATTGTTGAAGAA
GTTGGCAGTCATTAGAGTTTGCACAAAAGAATGTGAGAATGAAGAAGATT
GCCTTAAAAGGCTTTTGGaagattcaaaacattttgagaaGATTTATCGC
GAAAGGGGTCGTAAGTATTCTTCTTTTCAAACAAGATTATACAAATTGtg
tctccataacttgaacatgCGCAGAGGGAACAAGAATTTATGCgttcgaa
attttgaattatcgAGTAAGGTTAataaagcattgttaactgaagggaca
agaaaacttgtttgagttaagggaTAGTACTTAAAAAACGACAGTTTTCT
TcctgttttattcaaaatactttaataaaATACCATAACTTTGTATCGGG
GGATAAAGTCGTCTTTGACGACGGTTGAGATGGCTATCGAAGTATATTAT
GTTGTCTTAAATGAAGCTGAtgaatgaaaaagtgaaaagtccTCTTTGAC
GACGTCTTGGACAATGAGAGAATAATAGACCTTCATAGCAGTTTTGGAGT
ACTTTCTGTAAATTCTAGCGGTTAGAGGAAAAGGAGACAATGGAATTGGA
AAAGaagttttttatctttataGACAAATCAGAGAATCTGCATGATGACC
ATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATC
GTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATCC
TATTTTTGGAGTTCTGTTGAACCCTACTGGAGGTTTgtatattgggctct
tccaaaaaGTTTTCGTACATGAGGAGTGGATGATAGAGTTTcctaaaatc
tacaaaatttgccttgtccgaggggggggggtaacttTAATCattttgag
ggtaattttgactGTCAAGGGGGTCAAgaaatgcttgtccggggggtaaa
tttccaaaataattttatatcctccaccccccccatatatttaaatattt
tctggaaaagcccattctcatttttgtcatattttttttgattccaTCTT
CCCAAACTCGAACTAAAAAAGTCTCTTAGCTATGGtatttttcatgattc
tgatagcgctcacgattGTTCATGTTCATCAGgtatataagaatatttat
aagaacaattttagaaaaacaacgaGGCTCGaaaaaaaaccccaaaaata
gaaaattttaagaacattgttgAGCCAAGAataactacaatcatggtcgt
aatatttgagaaaaaagggaaatccaccagGAAGTTTTGAATAATAACcg
caatcgatttgtaagtgctctaaagtaggttggaagggtagagttttaac
tctgagttttaacatgagacttaagactgaggatcgaaatgttcaaaaat
ggtccattaaggctcataatatagcctggaggtctataaacccgagccaa
attgatagatggcccaaaatcggcTTTCTcacccgaactccaaatttcga
aaaacgagaaaataagcttaattctcaatagatttcgaccatgattgtaa
atGCTTAGTAAATTATCACATTAGAATAGACCTCAATCCTATCTATTAAA
AACCAGAACAGGCCAATTGATGCTCATACCacgaaaacaataaaaaataa
ccgagcctgaaaaaaattaccttatcggccctttttacaccggtcCTTAT
TACgtcacgagcccaaaaataccGCCAATaaaggccggtgtaaaaagTGC
CGATAAGATatactgattcttataaagaagttTAAAATTTAGTTCTCATT
CTTGGTATTTATTAAGGGCTTGTTGGGCCAGGTGATTTAAAATGGATGCA
CGATTCTTTATTCGACGATTTGGGACCTTTTGCATATCATTCAGCTGTTC
ATGATGCTTTCGgatatttgaaaacaaaccataATTCTGGTCCTGGATAT
TGTTATTTGAACAAAGGAATTTTTGGTGATTGGAGTCCATTTGGTGGACA
ATTATTTGGCTTGAGGTATTGGAATGGGCTTTTGGGTGAAGCCCAACCAG
AAGAAGCAAAGGCAGATCAGTTTGTGTTCAAATAAAAAGCGATAACACAA
TTGAAACTCTTATAGGTAAACAAAGTTTCTAAAGCTATACCCTATTTCTG
TGCAGAATGGTGCATCCGTGAATATTATTTCTTGTTCATCCTGTAACATT
TAAGTTACTAAGTTATGAGTATTTCAGCttttatttctttctaagaattt
tagaatttgtagtatagtatatttttataaattttatctttCAAAGATCT
TAAGGAtttttttCATCATCGGTTGAGAAATTTAGGTATTTAGAGTACCG
TACCAAAGcgatttttccatttcatcatggatattcttaatttttacaaa
aactttctaTACAGGGGAAATGCTTTTTCACTCTTTCAGGTTCAGGTTCA
GGTTTTAGTTCAGCCCCCCgggggggtggcaggggtggggggtactaggg
caatgggttacggggtTGctcgctggtcagggtacctttttaacctccac
gagtcccaggtaggggtcacaaaaacactaaaatagaaaaattccctcgt
agggt

Coding sequence (CDS) from alignment at sc0000117_pilon:141851..146405+

>MSTRG.14163.6.p1 ID=MSTRG.14163.6.p1|Name=MSTRG.14163.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3204bp|location=Sequence derived from alignment at sc0000117_pilon:141851..146405+ (Clytia hemisphaerica_ch_hm2_pilon)
atgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGATGT
CAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGACGA
ACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAGGA
AGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAGAT
CAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAAAG
CATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGTGAG
AATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacattttga
gaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATGACC
ATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATC
GTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATCC
TATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAGGTG
ATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTGCA
TATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaaccataA
TTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTGGA
GTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTTTG
GGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAAATA
AatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGATG
TCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGACG
AACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAGG
AAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAGA
TCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAAA
GCATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGTGA
GAATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacattttg
agaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATGAC
CATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGAT
CGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATC
CTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAGGT
GATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTGC
ATATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaaccata
ATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTGG
AGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTTT
GGGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAAAT
AAatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGAT
GTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGAC
GAACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAG
GAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAG
ATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAA
AGCATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGTG
AGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacatttt
gagaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATGA
CCATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGA
TCGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGAT
CCTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAGG
TGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTG
CATATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaaccat
aATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTG
GAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTT
TGGGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAAA
TAAatgGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGA
TGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGA
CGAACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGA
GGAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGA
GATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGA
AAGCATTGTTGAAGAAGTTGGCAGTCATTAGAGTTTGCACAAAAGAATGT
GAGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGaagattcaaaacattt
tgagaaGATTTATCGCGAAAGGGGTCACAAATCAGAGAATCTGCATGATG
ACCATGACTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTG
ATCGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGA
TCCTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGGCCAG
GTGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTT
GCATATCATTCAGCTGTTCATGATGCTTTCGgatatttgaaaacaaacca
taATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATT
GGAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTT
TTGGGTGAAGCCCAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTTCAA
ATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14163MSTRG.14163Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14163.6.p1MSTRG.14163.6.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14163.6.p1.exon1MSTRG.14163.6.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.6.p1.exon2MSTRG.14163.6.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.6.p1.exon3MSTRG.14163.6.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.6.p1.exon4MSTRG.14163.6.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14163.6.p1.exon5MSTRG.14163.6.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000117_pilongenomesc0000117_pilon:141851..146405 +