MSTRG.14145.1.p1 (mRNA) -

Overview
NameMSTRG.14145.1.p1
Unique NameMSTRG.14145.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000116_pilon:1019755..1021983+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14145.1.p1 ID=MSTRG.14145.1.p1|Name=MSTRG.14145.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2229bp|location=Sequence derived from alignment at sc0000116_pilon:1019755..1021983+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAAATAGTCAAATGATAAGAAAAGATGGATGGTTTTTGATTCCTAAATA
GATAGAATCGATATTTTAATATCTAGACAGTTTTTCTACTATTTTCACGG
GTTCCAAGGCCAGCTATCCATAAACTGAACGCAACATAGGAAGGAGTGTG
GGGATTACAACCGGGAACCCCTTGTTTCAGGCGCCGACTCCTGTAGGTCA
CCTAGCCACCATtccttaaaattgaaatataattATGCATTTGGCAGTTT
TTTCGGCCCAAATCATTTTGGTCTATGCACAATGGTACGaaaaaaaCcta
atcaaccaaccaaaaacaACAAGTATTGATACAAAGGATGCTTCAAAACC
TGTCCCAGCAAGATCACCTATCGAATGTGTTTTGAAATGCAAGAGAAAAC
TCCAAAAAGGTTATTTCATTGAAAGGAAACAACTATGcttttgctttcaa
agtaaAGAACAAGAATTACTTTTGGAtgacgaaaatgaaaatttagatgG
AGCTTCGTTCCAGGAGCACAAGGAGCACATGGTAAGCAAAATTTTGTATA
GGAGCAACTTTTAAGAACAACGAgactcaaaaatgccaaaaattgcaaaa
atagatcttatcggagtttttcatttctctaaaaaagcgttccattgtgg
gattgtttcgggagtattacaatagaattccctcgaggaattcctaagag
atttctattgtaatattcCCGAAACAATCCCCACAACGCattgatttttt
agaaaaattagaaactccgataagatctattgtcAACGGACCCTTAGAGA
GGCCAAACGTTACCGTCATAATACCCAGCATCTATTTTTGCCAGAGTCCC
CTCCCCTCGGGTTTGATAGAGGCTGGAAATTCCTGCTCTCAGTCtccttg
ttttaattttctttctttagcaATGTGGAAGTGAAATCAAAACATGCAAA
GACGTCAAAGAGATTTGTCCATATTGCAAATCAGGAATTTATGAAATGGA
AATTCTTGGTCAAAAAACGAAAGCCTTTTGTGACTTGACAACAGACGGCG
GTAAAGTATTTTTGACTTAATTTTTCGTCCAACGAATGTGCCAGCCCATA
GTGCTTAGTTCACTAATTTAAGCTATTTAGACAAAAATTGTAACTTTTGG
AAGGTAACAAAATATATAATAGGGCATTCATTTGATCAAAAAACAAGCCC
CTAAAAATGTCGAATCAAAAAAGGTCAAAGgatttgtttttacataagtg
ttcctgtttcataccagacacatatttcatatcaggatagTGTCTCCCTG
TTATTACATTatactgatataagcaaaaatatattttcccatttcctttc
tgaccaatcttactCCACATCCTTGTCAAaccaatgtgaaaaaacttgta
agtcaaaattgatgagtaagcaaccgatatcactcttatttaaaaacaaa
aactttaaaacaaatgttaagatttttaatcgaacatttttataggCGGA
TGGCTGCAAATAACGAATATCAAATTTGACGACGCAAACAAAATCGATTC
AATCTATACAAATCACATAGCTCAGCCATCTCCTATCACTGACCTCCAAA
ATGCACCAAACTCGCAATTCATGTTGGACCCACTCGCCTTACAAAGGCTT
TTCAATGACGAAGGTTACAGCGAGCTAAGAATCAAATGCTATAAACCATG
GCACGGCAGAACCCTTGACGTCGTTCTATACGGTGAAAAGATACACAAAT
ATGTAAATAGCGAAGCGTGGACCGTCGGTGGATGCGACGCAGTTCGGTTT
TTACCAGGTGATAACTCATCAATGTTCCTGTCCCCTTGTGCTGATTACAG
AATCGGATCAGGTGAATATTTGTTTTATCAATTCCCCTTTTGGGTATTTG
CAGACAATCACGTGACAATTTCAAAACCCCTCGCTCGGTATGAATGCGAC
GATTACAAGAACTGGAATGGGTATTCTCCTATCGGAAATTGGCAATTCTA
TATTCGCTAAAATTATTTCTACTTAAAGTCGTTTACACAGCACACCCACA
TGTTATGTTAAATgtaaaacaagacgacttgaagtcgaaaatttcgcgta
gaatttgaactacatgggaaaaacaagaagtagatgaagctaatctgaaa
tctactttacatcgagccttgatgaaacaattttacaacaagaacaacga
ggcttaaaattgctaaaaaataagaccaa

Coding sequence (CDS) from alignment at sc0000116_pilon:1019755..1021983+

>MSTRG.14145.1.p1 ID=MSTRG.14145.1.p1|Name=MSTRG.14145.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2826bp|location=Sequence derived from alignment at sc0000116_pilon:1019755..1021983+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATTTGGCAGTTTTTTCGGCCCAAATCATTTTGGTCTATGCACAATG
GTACGaaaaaaaCctaatcaaccaaccaaaaacaACAAGTATTGATACAA
AGGATGCTTCAAAACCTGTCCCAGCAAGATCACCTATCGAATGTGTTTTG
AAATGCAAGAGAAAACTCCAAAAAGGTTATTTCATTGAAAGGAAACAACT
ATGcttttgctttcaaagtaaAGAACAAGAATTACTTTTGGAtgacgaaa
atgaaaatttagatgGAGCTTCGTTCCAGGAGCACAAGGAGCACATGcaA
TGTGGAAGTGAAATCAAAACATGCAAAGACGTCAAAGAGATTTGTCCATA
TTGCAAATCAGGAATTTATGAAATGGAAATTCTTGGTCAAAAAACGAAAG
CCTTTTGTGACTTGACAACAGACGGCGgCGGATGGCTGCAAATAACGAAT
ATCAAATTTGACGACGCAAACAAAATCGATTCAATCTATACAAATCACAT
AGCTCAGCCATCTCCTATCACTGACCTCCAAAATGCACCAAACTCGCAAT
TCATGTTGGACCCACTCGCCTTACAAAGGCTTTTCAATGACGAAGGTTAC
AGCGAGCTAAGAATCAAATGCTATAAACCATGGCACGGCAGAACCCTTGA
CGTCGTTCTATACGGTGAAAAGATACACAAATATGTAAATAGCGAAGCGT
GGACCGTCGGTGGATGCGACGCAGTTCGGTTTTTACCAGGTGATAACTCA
TCAATGTTCCTGTCCCCTTGTGCTGATTACAGAATCGGATCAGGTGAATA
TTTGTTTTATCAATTCCCCTTTTGGGTATTTGCAGACAATCACGTGACAA
TTTCAAAACCCCTCGCTCGGTATGAATGCGACGATTACAAGAACTGGAAT
GGGTATTCTCCTATCGGAAATTGGCAATTCTATATTCGCTAAATGCATTT
GGCAGTTTTTTCGGCCCAAATCATTTTGGTCTATGCACAATGGTACGaaa
aaaaCctaatcaaccaaccaaaaacaACAAGTATTGATACAAAGGATGCT
TCAAAACCTGTCCCAGCAAGATCACCTATCGAATGTGTTTTGAAATGCAA
GAGAAAACTCCAAAAAGGTTATTTCATTGAAAGGAAACAACTATGctttt
gctttcaaagtaaAGAACAAGAATTACTTTTGGAtgacgaaaatgaaaat
ttagatgGAGCTTCGTTCCAGGAGCACAAGGAGCACATGcaATGTGGAAG
TGAAATCAAAACATGCAAAGACGTCAAAGAGATTTGTCCATATTGCAAAT
CAGGAATTTATGAAATGGAAATTCTTGGTCAAAAAACGAAAGCCTTTTGT
GACTTGACAACAGACGGCGgCGGATGGCTGCAAATAACGAATATCAAATT
TGACGACGCAAACAAAATCGATTCAATCTATACAAATCACATAGCTCAGC
CATCTCCTATCACTGACCTCCAAAATGCACCAAACTCGCAATTCATGTTG
GACCCACTCGCCTTACAAAGGCTTTTCAATGACGAAGGTTACAGCGAGCT
AAGAATCAAATGCTATAAACCATGGCACGGCAGAACCCTTGACGTCGTTC
TATACGGTGAAAAGATACACAAATATGTAAATAGCGAAGCGTGGACCGTC
GGTGGATGCGACGCAGTTCGGTTTTTACCAGGTGATAACTCATCAATGTT
CCTGTCCCCTTGTGCTGATTACAGAATCGGATCAGGTGAATATTTGTTTT
ATCAATTCCCCTTTTGGGTATTTGCAGACAATCACGTGACAATTTCAAAA
CCCCTCGCTCGGTATGAATGCGACGATTACAAGAACTGGAATGGGTATTC
TCCTATCGGAAATTGGCAATTCTATATTCGCTAAATGCATTTGGCAGTTT
TTTCGGCCCAAATCATTTTGGTCTATGCACAATGGTACGaaaaaaaCcta
atcaaccaaccaaaaacaACAAGTATTGATACAAAGGATGCTTCAAAACC
TGTCCCAGCAAGATCACCTATCGAATGTGTTTTGAAATGCAAGAGAAAAC
TCCAAAAAGGTTATTTCATTGAAAGGAAACAACTATGcttttgctttcaa
agtaaAGAACAAGAATTACTTTTGGAtgacgaaaatgaaaatttagatgG
AGCTTCGTTCCAGGAGCACAAGGAGCACATGcaATGTGGAAGTGAAATCA
AAACATGCAAAGACGTCAAAGAGATTTGTCCATATTGCAAATCAGGAATT
TATGAAATGGAAATTCTTGGTCAAAAAACGAAAGCCTTTTGTGACTTGAC
AACAGACGGCGgCGGATGGCTGCAAATAACGAATATCAAATTTGACGACG
CAAACAAAATCGATTCAATCTATACAAATCACATAGCTCAGCCATCTCCT
ATCACTGACCTCCAAAATGCACCAAACTCGCAATTCATGTTGGACCCACT
CGCCTTACAAAGGCTTTTCAATGACGAAGGTTACAGCGAGCTAAGAATCA
AATGCTATAAACCATGGCACGGCAGAACCCTTGACGTCGTTCTATACGGT
GAAAAGATACACAAATATGTAAATAGCGAAGCGTGGACCGTCGGTGGATG
CGACGCAGTTCGGTTTTTACCAGGTGATAACTCATCAATGTTCCTGTCCC
CTTGTGCTGATTACAGAATCGGATCAGGTGAATATTTGTTTTATCAATTC
CCCTTTTGGGTATTTGCAGACAATCACGTGACAATTTCAAAACCCCTCGC
TCGGTATGAATGCGACGATTACAAGAACTGGAATGGGTATTCTCCTATCG
GAAATTGGCAATTCTATATTCGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14145MSTRG.14145Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14145.1.p1MSTRG.14145.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14145.1.p1.exon1MSTRG.14145.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14145.1.p1.exon2MSTRG.14145.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14145.1.p1.exon3MSTRG.14145.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000116_pilongenomesc0000116_pilon:1019755..1021983 +