MSTRG.14133.1.p1 (mRNA) -

Overview
NameMSTRG.14133.1.p1
Unique NameMSTRG.14133.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000116_pilon:846510..850255+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14133.1.p1 ID=MSTRG.14133.1.p1|Name=MSTRG.14133.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3746bp|location=Sequence derived from alignment at sc0000116_pilon:846510..850255+ (Clytia hemisphaerica_ch_hm2_pilon)
GGAGTGCAAAATCGTCAACGAATACTTTTGACAACAAATAAACATGTCTC
GTGATTTAAACTGACAGTGCAATcaataagaaattttcaaagagGTTTCA
AACAAGCTTAAACAAGAAAGGTTCGAGCAAGGAAGTAAAAAGCTTGTGTT
TTTATTGCCCTCAATTTACAAGTGAGATTTAATCTTTCGACGAATAAGAT
GTTGTTGGAAGCTCTCTTCATTACGACAAGTAAGATGTTGGTTCTCTTAC
TACTTTGCAACTATATGTCCTAGTACTATCATTattcaacttttgttttt
tttcttctacacTGCATTgtccaacctcgtccccgtgtatcccaggcttt
atttacattactgattgacgccagagaattatatcatgaacatataaacg
actggacatctaccttttattgtctctttgaagcgagcttcgttgccgcc
tgtatttcaaaattggtatgaaaaatccgacaatattccgtcataatttt
atttctttgaattatttaggtaaaagattgatagagcttgaacattactc
ctaatgcacaaaaaaattattttcaatttttttcacaagtttgtaacata
ttttatcaacattttcaactctaaaatgcagaatttcaactgcgtgtata
cttttgaatcccttttgtcactccaataattttttttatgacttgAaaaa
aatagcttgccaaagtttagagcctgtgttataagaatatcgaaattaga
atgcgacactctctaaaattattagacacttttaagtcaaaatttagaaa
tattagtcggagttttgacaagctgacgatgattttgcctctgttatctt
tgttatgatatagataaaagacttgagaagagtagagcaacagagacttt
tgtcgaagttttgacgttgttagcaaggtactcccaagtggtatatcatc
aaaatctattgtttcattttatgcttttaacgaggcggcaacgaagctag
cagccctttctacaaaaagacaaaggagatggatgtccagtcgtttatat
gttcatgattatATCTAGCGCAGTAACaccatcaaaaagctgataaatac
gcagggaacgacgAGGTTGTGCATTGTCCTCATATATAAATTACGGACTT
TCCTAATAAGATGTTACATTTTCATTGTGATCTAGAACAGCCCCAATATC
TCTCAGCAATATAGACTGGTTTTCTAGCTACATTTTTTCACATGTTTGTG
TATATGTGTTGAACGaattctttcaatttcaatGTATGTAcctcaaaaaa
ctaaacatgGCAAATAAAAAATTCCCAAACATACTAAACTCCAACCGTGA
TTTATCTGTTTCTTTCAATGTATTTTAGTTGTCAGTGCTCAGGGTGGTGT
ATTCGTTCGAAAGGAGGCTGACCTCTGGGTATATCGTGGATATGGTCCAG
CATGCTCTGAGGGAATCAACAAAATACGAGCAGCTTTTGGTGACGAAAAC
CTCACATGGGATGATGAACTGTCATTAGAAGCTGAGAACTGGGCACTAAC
GCAAGCCATCAATTCTCCTAATGATGATTCTAAACATGCAGATACAAAGA
ACGGTGAAAATACATTTCAAGCTTGGTATTCCACCGTAGAACAATTTATT
GACGCCATCACTTGTGACTATCCTTTATGGGCGTGGTACCAGTAAGTCAA
CACTCTACCCTACACTTTTACCTGACCCTTAAGTCACTGATAATAAATCG
ATCCAAAGAATTTtctctaaagtctgtccagatataattggcagtggaaa
caagaacgcctgtaacttttgatagtcaaatataattatggaattttttt
ttgcttgtttcagagaatcaaaagcgctatatttgaatgtatttttggtt
gaaaaattcgcgatttttagcggttaaatttgcgattgcaaaaatttagc
tttttttctacttatgctataacgttcatttttacaccagtagtagttca
accttaggttaagaagttttttaaatttcaaggcgaacaaaaaagtcctt
cggaagatacgggacccgaaataccccttggtagcacttttctgtgaaat
atcaaatctccaacttattactggCAAACTCGAACGGAACACTAAGTGGT
GCCagtggctctgggtacaagATCTCCCTTGCTGGTTGAAGATACTAAAT
GAGTCTTCGGAACATCCAGCATCCAGGGATGTCTTGTGCAAAGAATCTGT
ATGGTAGTTTAAATCCTTGGCTAGAAATTGGGTTAATTTCCTGTAGCGAT
TTAACGAGACAGTAAATGTCCATACAACTTTATTAAAGTTAATGACAGAT
TCGATggtggaaataatttttattcacAATTTAGGGAGCGTGACCCAAAG
AAGCCATCAAAAGGCTTGATCAATCAACTAGTTGGtgaaaaagtgaagaa
ataTGGGATGGGCATGGTCGTCAACACTGCAAAGAAAGTTGTGTATTTTG
TCGGCCATTTTGATTACAACATGCCAATCGATCGAAAGATTTGGGATGAC
TATCTCAGCAAAAAGGAAAAATGGggtaaaaatcattttacaaATATTAC
GCGTTTGATTTATAGGAAcgtttataatttttgaaaccttcggatgttca
gAATGTTCGAATTTTCAAAGTATGGCACTCCCTATATTCAGTATACCTAA
ACGTTAGATTTGTGGGGCTCGATAAGCTGAACATATTTATGCATCATTGA
AAAGGAGTTTTTCAAGAGTATTTTTAAACCTTGTATCCTACCTTTTGTAT
TCTAGTTATTCCGAGCAGAGATCGTTTGAAGAGTAAAAAAGGTTCACTGA
CTCCGTCTTGTCGTGATTATAAACGAAACATTATACCGTGCAAATCTTCC
TTCAGAAGAACACGATACCACCAGGATGAGGAGAGGTAGGAATAACCTAT
tctcacacccctgtctcacagttaTCCAGTCAAAACCTTTTGGCcaggaa
gaaaaagaaaattaagaaatattGCATTTCGATCAACTCAGGGGGAGAGA
ACTTCAGTGTGTCtcattattcttttatagtaGAATTGCAATTGAAATTC
TTAACTTTGCAAGTtctaagccttaaaatgttcttgtttttaataattta
gccatcaaagccttgttcttatatagattgttcttataagaaacttGTGT
TGATGAAATTCACCTttctatcttcatttttagGCATGTCATTGTTATTG
AACCAAAAAGTTTCCCAATCGTTCTCTAAATCATACACCATAGCTCAGTA
TGTCAACGTTATTTTTGGTAtcgagtgcaatttttctcatctttgctgat
tttgACAGTACACTTTGGCAAGCTTGAAAAATATACCCATAAAGATAGCG
TTACCtttatctttcaaaatttaataatgaaaattattaGCTCGAAAATT
AGTAtgtataatttttctttctaaaattattttgtaaatttattgTCTAG
ATTTTAGTTTTAGAGTGAAAGTAAAACTAACGAAATTATCTCCTGATTTT
TATTGGAGACTACAGTATCTATGAAATTTTCTCTAAGTGATTATTTTAAT
CCCTCGCggataatttttggaaatgttttttACTACTGTCTTAAAATAGG
TTTAGAATGGTGATAAAGATAATAAAAAGTCATCAAAAGGTCTTAGCTTC
GATACGTCAATCGGTTTTGGTTGTTTACCCAACGAACAGGTCATTG

Coding sequence (CDS) from alignment at sc0000116_pilon:846510..850255+

>MSTRG.14133.1.p1 ID=MSTRG.14133.1.p1|Name=MSTRG.14133.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3555bp|location=Sequence derived from alignment at sc0000116_pilon:846510..850255+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGTTGGAAGCTCTCTTCATTACGACAATTGTCAGTGCTCAGGGTGG
TGTATTCGTTCGAAAGGAGGCTGACCTCTGGGTATATCGTGGATATGGTC
CAGCATGCTCTGAGGGAATCAACAAAATACGAGCAGCTTTTGGTGACGAA
AACCTCACATGGGATGATGAACTGTCATTAGAAGCTGAGAACTGGGCACT
AACGCAAGCCATCAATTCTCCTAATGATGATTCTAAACATGCAGATACAA
AGAACGGTGAAAATACATTTCAAGCTTGGTATTCCACCGTAGAACAATTT
ATTGACGCCATCACTTGTGACTATCCTTTATGGGCGTGGTACCAGGAGCG
TGACCCAAAGAAGCCATCAAAAGGCTTGATCAATCAACTAGTTGGtgaaa
aagtgaagaaataTGGGATGGGCATGGTCGTCAACACTGCAAAGAAAGTT
GTGTATTTTGTCGGCCATTTTGATTACAACATGCCAATCGATCGAAAGAT
TTGGGATGACTATCTCAGCAAAAAGGAAAAATGGgTTATTCCGAGCAGAG
ATCGTTTGAAGAGTAAAAAAGGTTCACTGACTCCGTCTTGTCGTGATTAT
AAACGAAACATTATACCGTGCAAATCTTCCTTCAGAAGAACACGATACCA
CCAGGATGAGGAGAGGCATGTCATTGTTATTGAACCAAAAAGTTTCCCAA
TCGTTCTCTAAATGTTGTTGGAAGCTCTCTTCATTACGACAATTGTCAGT
GCTCAGGGTGGTGTATTCGTTCGAAAGGAGGCTGACCTCTGGGTATATCG
TGGATATGGTCCAGCATGCTCTGAGGGAATCAACAAAATACGAGCAGCTT
TTGGTGACGAAAACCTCACATGGGATGATGAACTGTCATTAGAAGCTGAG
AACTGGGCACTAACGCAAGCCATCAATTCTCCTAATGATGATTCTAAACA
TGCAGATACAAAGAACGGTGAAAATACATTTCAAGCTTGGTATTCCACCG
TAGAACAATTTATTGACGCCATCACTTGTGACTATCCTTTATGGGCGTGG
TACCAGGAGCGTGACCCAAAGAAGCCATCAAAAGGCTTGATCAATCAACT
AGTTGGtgaaaaagtgaagaaataTGGGATGGGCATGGTCGTCAACACTG
CAAAGAAAGTTGTGTATTTTGTCGGCCATTTTGATTACAACATGCCAATC
GATCGAAAGATTTGGGATGACTATCTCAGCAAAAAGGAAAAATGGgTTAT
TCCGAGCAGAGATCGTTTGAAGAGTAAAAAAGGTTCACTGACTCCGTCTT
GTCGTGATTATAAACGAAACATTATACCGTGCAAATCTTCCTTCAGAAGA
ACACGATACCACCAGGATGAGGAGAGGCATGTCATTGTTATTGAACCAAA
AAGTTTCCCAATCGTTCTCTAAATGTTGTTGGAAGCTCTCTTCATTACGA
CAATTGTCAGTGCTCAGGGTGGTGTATTCGTTCGAAAGGAGGCTGACCTC
TGGGTATATCGTGGATATGGTCCAGCATGCTCTGAGGGAATCAACAAAAT
ACGAGCAGCTTTTGGTGACGAAAACCTCACATGGGATGATGAACTGTCAT
TAGAAGCTGAGAACTGGGCACTAACGCAAGCCATCAATTCTCCTAATGAT
GATTCTAAACATGCAGATACAAAGAACGGTGAAAATACATTTCAAGCTTG
GTATTCCACCGTAGAACAATTTATTGACGCCATCACTTGTGACTATCCTT
TATGGGCGTGGTACCAGGAGCGTGACCCAAAGAAGCCATCAAAAGGCTTG
ATCAATCAACTAGTTGGtgaaaaagtgaagaaataTGGGATGGGCATGGT
CGTCAACACTGCAAAGAAAGTTGTGTATTTTGTCGGCCATTTTGATTACA
ACATGCCAATCGATCGAAAGATTTGGGATGACTATCTCAGCAAAAAGGAA
AAATGGgTTATTCCGAGCAGAGATCGTTTGAAGAGTAAAAAAGGTTCACT
GACTCCGTCTTGTCGTGATTATAAACGAAACATTATACCGTGCAAATCTT
CCTTCAGAAGAACACGATACCACCAGGATGAGGAGAGGCATGTCATTGTT
ATTGAACCAAAAAGTTTCCCAATCGTTCTCTAAATGTTGTTGGAAGCTCT
CTTCATTACGACAATTGTCAGTGCTCAGGGTGGTGTATTCGTTCGAAAGG
AGGCTGACCTCTGGGTATATCGTGGATATGGTCCAGCATGCTCTGAGGGA
ATCAACAAAATACGAGCAGCTTTTGGTGACGAAAACCTCACATGGGATGA
TGAACTGTCATTAGAAGCTGAGAACTGGGCACTAACGCAAGCCATCAATT
CTCCTAATGATGATTCTAAACATGCAGATACAAAGAACGGTGAAAATACA
TTTCAAGCTTGGTATTCCACCGTAGAACAATTTATTGACGCCATCACTTG
TGACTATCCTTTATGGGCGTGGTACCAGGAGCGTGACCCAAAGAAGCCAT
CAAAAGGCTTGATCAATCAACTAGTTGGtgaaaaagtgaagaaataTGGG
ATGGGCATGGTCGTCAACACTGCAAAGAAAGTTGTGTATTTTGTCGGCCA
TTTTGATTACAACATGCCAATCGATCGAAAGATTTGGGATGACTATCTCA
GCAAAAAGGAAAAATGGgTTATTCCGAGCAGAGATCGTTTGAAGAGTAAA
AAAGGTTCACTGACTCCGTCTTGTCGTGATTATAAACGAAACATTATACC
GTGCAAATCTTCCTTCAGAAGAACACGATACCACCAGGATGAGGAGAGGC
ATGTCATTGTTATTGAACCAAAAAGTTTCCCAATCGTTCTCTAAATGTTG
TTGGAAGCTCTCTTCATTACGACAATTGTCAGTGCTCAGGGTGGTGTATT
CGTTCGAAAGGAGGCTGACCTCTGGGTATATCGTGGATATGGTCCAGCAT
GCTCTGAGGGAATCAACAAAATACGAGCAGCTTTTGGTGACGAAAACCTC
ACATGGGATGATGAACTGTCATTAGAAGCTGAGAACTGGGCACTAACGCA
AGCCATCAATTCTCCTAATGATGATTCTAAACATGCAGATACAAAGAACG
GTGAAAATACATTTCAAGCTTGGTATTCCACCGTAGAACAATTTATTGAC
GCCATCACTTGTGACTATCCTTTATGGGCGTGGTACCAGGAGCGTGACCC
AAAGAAGCCATCAAAAGGCTTGATCAATCAACTAGTTGGtgaaaaagtga
agaaataTGGGATGGGCATGGTCGTCAACACTGCAAAGAAAGTTGTGTAT
TTTGTCGGCCATTTTGATTACAACATGCCAATCGATCGAAAGATTTGGGA
TGACTATCTCAGCAAAAAGGAAAAATGGgTTATTCCGAGCAGAGATCGTT
TGAAGAGTAAAAAAGGTTCACTGACTCCGTCTTGTCGTGATTATAAACGA
AACATTATACCGTGCAAATCTTCCTTCAGAAGAACACGATACCACCAGGA
TGAGGAGAGGCATGTCATTGTTATTGAACCAAAAAGTTTCCCAATCGTTC
TCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14133MSTRG.14133Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14133.1.p1MSTRG.14133.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14133.1.p1.exon1MSTRG.14133.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14133.1.p1.exon2MSTRG.14133.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14133.1.p1.exon3MSTRG.14133.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14133.1.p1.exon4MSTRG.14133.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14133.1.p1.exon5MSTRG.14133.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000116_pilongenomesc0000116_pilon:846510..850255 +