MSTRG.14063.3.p2 (mRNA) -

Overview
NameMSTRG.14063.3.p2
Unique NameMSTRG.14063.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000115_pilon:573316..579143+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14063.3.p2 ID=MSTRG.14063.3.p2|Name=MSTRG.14063.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5828bp|location=Sequence derived from alignment at sc0000115_pilon:573316..579143+ (Clytia hemisphaerica_ch_hm2_pilon)
agaaattcaaaggggaaaaatgaaaacaaaaaagcaacTGAATACACAGA
GTGGGAGACTTAACAACAAAAGAACAACAGCCAACACGAAACCTCCGCAA
CAATCAAAATATAGTTTCCGGGAACGTGCGATTGTTATTGAATCATCCAC
AGAAAACGAATCGAGTGATGGTGAAACTGTAGACTCAGAAATCGAGAGTA
ACAAAAAACACAGTggagaaaacgaaaaaaacccACAAATCTCAGGTGAT
GAGACTGAGAGTCTTTCAGAATCAGATGTTGAGTCTCTGCCTCACAAGTC
AACAAAAACACGTCAATCTCCAAGGAAATCACCTAGAAAACAACCTCCAG
TAATAGATGACGACAACCCACAAACTTCAGGTGATGAGACTGAGAGTCCT
TCAGAATCAGAAGTCGATTCTCCGCctcaaaaaaacacaaaaaaacgtCA
ATCTCTGAGGAAATCACCTAGAAAACAACCTCCAGTAATAGATGATGAAG
ATTCTGACATCATCTCATCCAAATCTCGAAGATCCACTAATAGGACGCTT
AGATCAGGGATGGAATGCATAGAGGATAGTCCACAGAGTTCACCCAATTC
CGCTGCAGATTCGGCTTCGCCAAAGCTATTTTCACCAGCTGATCCAGAAT
CCCCTGGAAGTCAAAATTCGTCAGTATCGTCCTTTGATGAGTCAAGATTA
AGGAATGAAACCTCTAACCATGCTGAGTAAGCATTGTGTTTCTCTCTCTA
AACCAATTAAAGAGTCTGGTCTTTCAAAAGTTAAtagtgttttgattttc
ttttgtcatttattGTTGGGATCTACCATCACTAGGATGATTTTGGTTGT
GGCGTTTTATATGcctgaaaaatagtttgatatgatatgattgatttctt
ttttctatcttTGTACAATCAGATCGATTCACTTTGATTTCACGCCAATT
ATGAACGTTGACAAGCTTCCTACAACGAATGTCGAAAAACAACCTCCAAA
TACTGTTCCTTATGGCCATGGTAACTATCATACGAATTTAGATTGGTATT
CGTTtaacaatttgaaaatttttgggaATGACTGAATGTGAATGTTTTTG
GATGGTGCTTGGAATAAACTCACATCACtttttttCAGATATAATATCAA
TCAAAAGTTTTGAGTCCGACAAGctcaatttaaaatttccatCATAATTT
TCCCTACACTCCAGGTGCACCAATTGAAGCTTGTAAGATAAAAGATCACT
TATCCATTTATTATAACGAACGTGGCATATGTGATGAATTCGCCAAGAGA
GAAAACCTACAAATTccacaaatgaaaatattatggAATAGCTACCTTGA
GTTTATGACCATCAAAATAATAGGCTGCGATACCGGGCTCGATGGACTGA
TACGATACTCAACTTGCACTGAAATGCATAAACTATGGCACGCACATGTT
TTGAACACACATAATTACAGAACATTCATGGCATTAATCAATAACATTAA
TCCTTTAATCGAATATTTGGACCCTTCTATTGAGCACGCCAATTCTACTG
AAGAAACCAAGAAGAGACAAATCCAGAATACGAAAGAAGCTTACAGGTAT
TGAGTCATTTTGTTCGCAATTTTTGCAGGTTTTGTTAAGTCCGGGATTGt
ttttttATCTGCTTTTACTCTTTTCATTTCCATTGGACGAAAATTACTCA
ATAATTTCCCTGTTAAGCTGGCTGGAATGTGTCATGTTTAAGTAGCTTAT
ACTATGTCCTTCTGAGTTTATGACACCAAACACATTTATATATCCATGTT
TTGTTCATCAGGAAACTATTCAAGAAAGAATGTCCGTGGTTGTCTTCCAC
ACAAGAGGATGATGAAATTCCAACAATAGAAGTATCGGTACCCAATACAC
CAAACACTACAAATGATCGACCAAGTACAATAGATAAAAACTCCAATAGT
AATACATCTAATAAATTAACACACAATGCTCATTCAAAATCATCAAGATC
AGCTAATGACCCTTTAATATCCACCAATAATGGCACTCTTACAAAGACAA
CTAAATCTGTTTCAAAATCATCTAAATCAACCTCTGCTGATAATGTAAAC
TATGCATCTACATCTAATAACAAATCACGTAAACGTaaacaaaataatca
aatcGAGTCCTTGACCGTCAACATAAAGACACACTCCACTGGCAAACTCa
cgttttttgaaagatttacaATAACGCCATCAATAACAGTTCTAAAGTTA
AAAGAAATGCTTGCGCAAAGGCAGGATGTCCCTACTGAGTCCTCTCTTCT
ATGTTTTAGCGGCAAGCATCTTGAAAATCATAAATCATTATCAGAATATG
AAATAACAGATTTGTGTACTATCCATTACGTCGAATCACGCGCCAGTCGA
CGGAATAAGAAATAGTTGTCCACAAGTTTGGAGCAGCATTGTTTTGAGAT
AGTGCGTCCTTTTTGTGCAAGTTGAGATCTGCAACCTTGgctgaaatata
ttgagattttagtgtattttaacgtttttcaaaatttaaagttcgagcga
gaattgctattttagcacttccactttctttcattgaatatttcgatttt
agagggggttcggtggcttctaggctatattccaagccttattcgagtaa
atttgagcttttaaatcctgagatcccaGGTCCTAAGTCTCAAACTGTAG
tctaaggcgcttaaaaatcatttgtggtgtttaaaatttcgccgggaaat
ccccttagtctcaaatattttgtccatgattgtggATTCATCAAGGATTA
ggtgtcttttttttttaatcttatgTTGGCAGCAACCTCGTCAAATTATG
TTTGATGTGTGGTGAAAgtttgtgaaaatatttttttatccattttcttc
TGTAAATTGTTATGCGTCTTCTGTTTTGTCTCTATTTTTCAATCTTTAAG
AATTCTCTTGGGTAGCTAGTaagtattttcgacaccctaaTTATTTTTAG
AGAATGGCTACCTGGGAAATTAATTCTCGTAAAAAATTTGTCCTcattct
tcttcgttttctttctctttttttttactttattttttttacttcttttt
tcattattattccaaaatataacattttttgtttttttaactaCCGTCCC
GCCGTCGAAAATAGCCAAGATTGTGACTATTTTGATAACGAGGATATCAA
GTTTTGTTGGTGATGTGGTTGCATGAAAATTACACTTGACTACTCCATGT
CAATTGCACTAAGCCATATAAAACAGGTTTAGTAATACTTGTTTTATACT
AAAGAGTGGCATTCAGCCGGGTGGACCaaaaaaaaCGCaacataatttat
ttttgacgtATCTTTAAAATTTATCGAGCTTACTTTATAATTTTCACAGG
GATTTTTACTTACCTAGTTTCCATCGTCTCCTGAAATTTGAAATCTATAA
CTTGATTACAAAAGCAATTATCGTTGTTTTAGTACGagtactttttttca
atttgttacAAAATTGACGTCGCAGTATAatgttgatttatttttcaaca
gGTAGATTGCATACAGGTAATATAATCTGGGCAAATTTTATCTTGTACgt
agaaaatttttaatatatcaaaatttagatatttaaaacttttttgattt
tttttatgtctTTTGTATTAGGGTTATCTTTTATTATCACCCTCTTAAGG
AAGACTGTTTTAGTGTCCGGCGAGGAATCAGGGAGGGTTCTCCTGAATCT
CCCTTGATATCTAGTGCGACACttttatgttattgatagccattgtttgt
atgtatggttgtatatatttttgtgtgtttgtgtgtttatGCGTCACCAC
TttcatctttgaaatattttgttctttaaaagatgacttttgagTTGATA
GAGTCTGGTCTAGACTTCATTAAGCCTTTGATTTGAAATTAAAGACCCAT
CTACATTAAGAGCATTTTGAATTTCTACCTTGGCTAGCTTTTCTCTTCCT
TTACatcttttcgaatgtaattatcgaccttatttgattaatgacattcg
aattattttcaaaacaaaataaaaaagtctttttatctagaaaagaacaa
aatctataaaaacattaaaatctaaaagtacaaaCTAAGACTTTTTAAGA
AGCGCAACTTAAAATTGTTACTTGTttactattttttgaatttgacaaaa
aaatttacattattaTATGTTTGTCTGTGTGTCTTTGCCGCCTGAAGAAT
CTAATCTCACTCCTCTattttgacatcaaagtttttcaaataatCGAGAG
CTGAACGGCACATttaaagcgagcgaagcgagaagaATGTAATTGTAGCA
TAATCGTCTCGAACACGACACCAGAAcgcaaataatttttattttatttt
ctattactGCTTCAGAAAGATTTTAATGCAAAGAATGAATGCTTTTAAAG
CTAAAGACATTTTATCAACATATAATGGAAAGAATCACATTTGCGATTTA
TTCTGGAGAAAAGAAAACCTATCAAAAACTGCGATAAACATTTTATGGGA
CCACTATCTAGAATTTATGACCATCAAAGTATTAGCTTTTGATACTGGtg
ttaaaaatcaaatgaaatattCGACAAGTCAAATCATGGAGTCGTTATGG
AATGCGCATGTGCAGTGCACAGAACGTTATCAACAGTTCATGTTGTTGGT
GAATAAGATAAATCCTATGGTTGATTTCATACATCACTCTCTAGAGATGT
CCATCTCCTCTGAAACGTCCAAGAAAAAGCGAAGATATAACACTGCAATT
GCATATaggtattttttatcttttctgttGTGCTTGAATAGTGCACAGCT
TATGTAACGTTTGATGGATTTTAAGGCGAAGATATAGGTGAATGGCAttt
ttttACGTAGGAcaagtgaatttttttcaccagataTTATAAAACTGTAG
TGGGTTAAACTATCGGTATTCTTTCTGTGGTTGTACGTTTCTTACAACAG
CTGATATATTGCGtttttttAAGACGTCCAATTTAACGACCGTTTTTTCT
GTATTGATCAGGAAAAAACTCCGGTCTAGTGAGATGAAAAATGGTAGCCA
TAATATTCTGGGGGAAAATTGCATGAAATTTGCGTCATTAAAACAGAGTA
AACGTGTCGTAAAGCCTACAAGAGTAAGCTCAAATCGCTAATACAGATAT
AGCttttttttACCAAGCTCGGGGTCCTTTATTTCAACAGTCATTTATTT
TGGTTGACATTTAATTTACAGAAAGCTTTTCAATAAAGAATGCAAATGGA
TCTACGATGAAACTGAACCAAACCCTCCAATACCAATAAAGGAATCACGA
AAGCGAAAACAAAAATCGGTGGCAGACGAGTATTCGAAAATCTACGTGAA
ATCGTTAAACGGTAACAAAACGCATACAATTCGAATCGTTTCTTGTATGA
CAGTAAAGCAACTAAAACAATTAATCAAAACTCTAGACGGAACTTCTGTT
GAGCGACAACATCTCATTCTAGCTGGCAAGGAGCTTCAAGATCAATGTCT
ATTGGGTCATTATTGTGTGAGAAGTGGATGTACGATGCATCTGGTGTGTT
CGAAAACGTCCAGAATGTTACAGAAAGTCAATTTCAGAAGATCACCTTGA
ATTTTATAACTGAAAAGATGttagaaatttatcaaaatcttttgaattct
aAAAGCTTTGTCTGCAATATATCTTGAGCTTTTGTGTTGCTTGagttttt
tttgttgtgttgCTTTTTTCCTTTATAATACTTTTATCACTAAGCACAGG
CATTTTGTATGGCCTTAGTAGTGAGCCT

Coding sequence (CDS) from alignment at sc0000115_pilon:573316..579143+

>MSTRG.14063.3.p2 ID=MSTRG.14063.3.p2|Name=MSTRG.14063.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1524bp|location=Sequence derived from alignment at sc0000115_pilon:573316..579143+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAAAGAATGAATGCTTTTAAAGCTAAAGACATTTTATCAACATATAA
TGGAAAGAATCACATTTGCGATTTATTCTGGAGAAAAGAAAACCTATCAA
AAACTGCGATAAACATTTTATGGGACCACTATCTAGAATTTATGACCATC
AAAGTATTAGCTTTTGATACTGGtgttaaaaatcaaatgaaatattCGAC
AAGTCAAATCATGGAGTCGTTATGGAATGCGCATGTGCAGTGCACAGAAC
GTTATCAACAGTTCATGTTGTTGGTGAATAAGATAAATCCTATGGTTGAT
TTCATACATCACTCTCTAGAGATGTCCATCTCCTCTGAAACGTCCAAGAA
AAAGCGAAGATATAACACTGCAATTGCATATagAAAGCTTTTCAATAAAG
AATGCAAATGGATCTACGATGAAACTGAACCAAACCCTCCAATACCAATA
AAGGAATCACGAAAGCGAAAACAAAAATCGGTGGCAGACGAGTATTCGAA
AATCTACGTGAAATCGTTAAACGGTAACAAAACGCATACAATTCGAATCG
TTTCTTGTATGACAGTAAAGCAACTAAAACAATTAATCAAAACTCTAGAC
GGAACTTCTGTTGAGCGACAACATCTCATTCTAGCTGGCAAGGAGCTTCA
AGATCAATGTCTATTGGGTCATTATTGTGTGAGAAGTGGATGTACGATGC
ATCTGGTGTGTTCGAAAACGTCCAGAATGTTACAGAAAGTCAATTTCAGA
AGATCACCTTGAATGCAAAGAATGAATGCTTTTAAAGCTAAAGACATTTT
ATCAACATATAATGGAAAGAATCACATTTGCGATTTATTCTGGAGAAAAG
AAAACCTATCAAAAACTGCGATAAACATTTTATGGGACCACTATCTAGAA
TTTATGACCATCAAAGTATTAGCTTTTGATACTGGtgttaaaaatcaaat
gaaatattCGACAAGTCAAATCATGGAGTCGTTATGGAATGCGCATGTGC
AGTGCACAGAACGTTATCAACAGTTCATGTTGTTGGTGAATAAGATAAAT
CCTATGGTTGATTTCATACATCACTCTCTAGAGATGTCCATCTCCTCTGA
AACGTCCAAGAAAAAGCGAAGATATAACACTGCAATTGCATATagAAAGC
TTTTCAATAAAGAATGCAAATGGATCTACGATGAAACTGAACCAAACCCT
CCAATACCAATAAAGGAATCACGAAAGCGAAAACAAAAATCGGTGGCAGA
CGAGTATTCGAAAATCTACGTGAAATCGTTAAACGGTAACAAAACGCATA
CAATTCGAATCGTTTCTTGTATGACAGTAAAGCAACTAAAACAATTAATC
AAAACTCTAGACGGAACTTCTGTTGAGCGACAACATCTCATTCTAGCTGG
CAAGGAGCTTCAAGATCAATGTCTATTGGGTCATTATTGTGTGAGAAGTG
GATGTACGATGCATCTGGTGTGTTCGAAAACGTCCAGAATGTTACAGAAA
GTCAATTTCAGAAGATCACCTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14063MSTRG.14063Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14063.3.p2MSTRG.14063.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14063.3.p2.exon1MSTRG.14063.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14063.3.p2.exon2MSTRG.14063.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14063.3.p2.exon3MSTRG.14063.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14063.3.p2.exon4MSTRG.14063.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14063.3.p2.exon5MSTRG.14063.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14063.3.p2.exon6MSTRG.14063.3.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000115_pilongenomesc0000115_pilon:573316..579143 +