MSTRG.14039.4.p1 (mRNA) -

Overview
NameMSTRG.14039.4.p1
Unique NameMSTRG.14039.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000115_pilon:277628..281586+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.14039.4.p1 ID=MSTRG.14039.4.p1|Name=MSTRG.14039.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3959bp|location=Sequence derived from alignment at sc0000115_pilon:277628..281586+ (Clytia hemisphaerica_ch_hm2_pilon)
GTTCAAGATGGCTGCCGCTTCTACATCATCTGAAAAACTCAATTCTTGTG
TAAAAACAGATGTATTTTTATCCCACGATTGGGGTGAAGATGGTATAACT
AATCACAAAAAGGTCGAGAAAATCAACGAGGCGATCAAAGGATTGGGATA
TGTGACTTGGTTCGACAATGAACGAATGGTTGGTAACGTACGAGAACAGA
TGGCAAACGGAATCCTAAACACCAAATGTTTTATTGCTTTCATTACAAAG
CATTATCATAACAAAGTGGTCTTCGGTCTTGATAAAGATAATTGTCGagc
tgaatttaattttgccAGCATGAAAGTCCCAATGGTTGCTGTACTTCTTG
ATCCATCGATGAAAAACCCTCATGATTGGAAAGGGAATCTAGGATTCACA
CTCGCAACACAATTATATATTGATTTGTCTGGTGATATCAATGATGAAAA
GTATTTGACGAATCAACTCAAACTTCTGAAAAAAGATTTGACGTCCAAAG
GAATCTTCCCAAATAAATTAGAAGAGACAGCGAATGAATTGAAAGGTAAT
TTTTGTCTCGTTTTGTAGAAATCGTATCGATATAAAGGCCAGCTTTAAGA
AAACTAACCACCCAAGAAATTATTGactaaattttcttaatttcaacTAT
AAACATACGagtaaaagtgtgataactggtttaaCGATTTAACGGATTAT
CTTTTTGTACGGCCCATTTAAAATGTTGATTTCATTATATTCACTTTAAT
TACAAAATCATTTCCCTCCCTTTTCTACGGAAGCCCATTAGTGCCATTTA
GATTTTCCTTTAGTTTTTTAAcgacgaaactaaaaaaattgacgacaaaa
ctaaaaaattgacaacaaaaataaaaaattgacgacgaaaatgaaaaatt
gacgacgaaactgaaaataaattgttactTTGTTTCGTTGTCgaaaaaat
tgacaacgaaactaaaaaaattgacgacaaaactaaaaaattgacgacga
aactgaaaataaattgttacttcgtttcgtcgtcgaaaaaaaTCGACAAC
GAAACtagaaaatatttgagaatGGTGGCCCTGGTGGTTGAAAATTAATT
CTGGTGGATTATGAAGTGGGATTTGATAGTTCCGGTGAATGCAATGCTGG
TGAAGATGGTTCTTGTGAATGAGATGCTGGTAATGATGAACTAGAATAAG
GATGTGATGGTGGCCCGGGGATGCTGGCCCGGGGATGGTGGAGATTGTTG
GAATCAACGGTGTCAATGGAATCATTGGAATTAATCAATagcaaatgatg
gaatcaatggagcagatgatggaatcaataatggagcagatgatggaatc
aatggtgcaaatgATGAAATAAATAGAACAGATGATGGAATCCATTGTGC
GGGTGATGGAACCAACTATTGATTCTATCATTTGCACCattcatttcatc
attgattagtTCCAATGATTTCATTGACACCCCAGTGACTCCAACATCTC
CACTATCACATCCTTATTCTGGTTCATCATTGCCAGCATCTTATTCACAA
GAACCATCTTCACCagcattgcattcaccagaactatCAAATCCATTTTC
AGAATCCACCAGAATCAATaatatttccatttttcaaccatcagggccac
cattttcaattttttttagttttatagttcgattttttcgacgacgaaaa
gaagtaacaatttattttcagtttcgtcgtcaatttttcagtttcgtcgt
caatttctttagtttcgtcgttAAAAAACTAAAGGAGAATCTAAATGGCA
CTAATGGGCTTCCgtacttttttgtttatttattcgGTTATTCAATTCGC
ATTTTACGTTTTTGTGATAAGAACATTCATTCATGTTCACGTTATCGATA
TCTGAAATTACCCGAAAATGCGAAATCTTTCGGTATCCGAattttcttgt
cgaatatctcAAAAATTATTATACTCAAGTCAACGCCCCAGTAATAAATA
TTACGCTTACAGTTTTAGATATTCGATGGGAAGGCGATCCTTTGGTGAAG
AACGCTGTTGAAAATCAAGAAACAATACAGGATGAAAGCATTGAGAAATT
GAAGGGGAAAGTAAATAATCTACGGAGAAATGGGGAGTGGGCCGAAGCTA
TTCCTCTTTATGAAGATATTATTAAGAAACAATCTTCCACTTTCGGTGAG
AACCACAAGGATACTCTGGATACCAGATACTGGTTGGCTCTTTGTCATTG
CCAGCAAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCCG
ACAAACAATCTTCCACTTCAGGTGAAAACGACAAGAATACTCTGAATACC
AGATACTGCTTGGCTCTATGTTATTACGAACAAAATGATTACCAAAAAGC
CATACCAATCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTGGGTG
AGAACCACGAGGATACTCTGAATACCAGATACTGCTTGGCTCTTTGTTAT
TACGAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGC
TGACAAACGAACTTCCACTTTAGGTGAAAATGAAGCAGATACTCTGGATA
CCAGATACTGGTTGGCTCTTCGTCATTACCAGCAAAATGATTACAAAAAA
GCCATACCAATTTTCCAGGATGTAGCCGAGAAACAATCTTCCACTTTAGG
TGAGAACCACGAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTT
ATCACCAACAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTA
GCTGACAAACGAACTTCCACTTTAGGTGAAAATGAAGCAGATACTCTGGA
TACCAGATACTGGTTGGCTCTTTGTCATTACCAGCAAAATGATTACAAAA
AAGCCATACCAATTTTCCAGGATGTAGCCGAGAAACAATCTTCCACTTTA
GGTGAGAACCACGAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTG
TTATCACCAACAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATG
TAGCTGACAAACGAACTTCCACTTTGGGTGAGAACCACGAGGATACTCTG
AATACCAGATACTGCTTGGCTCTTTCTTATTTCAAACAAAATGATTACCA
AAAAGCCATACCAATCTTCCAGGATGTAGCCGATAAACGAACTTCCACCA
TAGGGGAGAACCACGAGGATACTCTGAATACCAGATACTGGTTGGCTCGT
TGTTATTACCAACAAAATGATTACCAAAAATCCATACCAATTTTCCAGCA
TGTAGCCGACAAACAGTCTTCCACTTTAGGGGAGAACCACAAGGATACTC
TGAATACCAGATACTGGTTGGCTTTTTGTCATTACCAGCAAAATGATTAC
AAAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCAC
TTTAGGGAAGAACCACAAGGATACTCTGAATACCAGACACATGTTGGCTT
TTTGTTATCACCAACAAAATGATTACCAAAAATCCATACCAATTTTCCAG
CATGTAGCCAACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATAC
TCTGAATACCAGATACTGGTTGGCTTTTTGTTATTACGAACAAAATGATT
ACCAAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCC
ACTTTAGGGAAGAACCACAAGGATACTCTGAATACCAGATACTGGTTGGC
TTTTTGTTATCACCAACAAAATGATTACCAAAAAGCCATACCAATTTTCC
AGCATGTAGCCGACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGAT
ACTCTGAATACCAGACACATGTTGGCTTTTTGTTATCACCAACAAAATGA
TTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCCGACAAACAAACCT
CCACTATAG

Coding sequence (CDS) from alignment at sc0000115_pilon:277628..281586+

>MSTRG.14039.4.p1 ID=MSTRG.14039.4.p1|Name=MSTRG.14039.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4068bp|location=Sequence derived from alignment at sc0000115_pilon:277628..281586+ (Clytia hemisphaerica_ch_hm2_pilon)
TTCAAGATGGCTGCCGCTTCTACATCATCTGAAAAACTCAATTCTTGTGT
AAAAACAGATGTATTTTTATCCCACGATTGGGGTGAAGATGGTATAACTA
ATCACAAAAAGGTCGAGAAAATCAACGAGGCGATCAAAGGATTGGGATAT
GTGACTTGGTTCGACAATGAACGAATGGTTGGTAACGTACGAGAACAGAT
GGCAAACGGAATCCTAAACACCAAATGTTTTATTGCTTTCATTACAAAGC
ATTATCATAACAAAGTGGTCTTCGGTCTTGATAAAGATAATTGTCGagct
gaatttaattttgccAGCATGAAAGTCCCAATGGTTGCTGTACTTCTTGA
TCCATCGATGAAAAACCCTCATGATTGGAAAGGGAATCTAGGATTCACAC
TCGCAACACAATTATATATTGATTTGTCTGGTGATATCAATGATGAAAAG
TATTTGACGAATCAACTCAAACTTCTGAAAAAAGATTTGACGTCCAAAGG
AATCTTCCCAAATAAATTAGAAGAGACAGCGAATGAATTGAAAGTTTTAG
ATATTCGATGGGAAGGCGATCCTTTGGTGAAGAACGCTGTTGAAAATCAA
GAAACAATACAGGATGAAAGCATTGAGAAATTGAAGGGGAAAGTAAATAA
TCTACGGAGAAATGGGGAGTGGGCCGAAGCTATTCCTCTTTATGAAGATA
TTATTAAGAAACAATCTTCCACTTTCGGGGAGAACCACAAGGATACTCTG
AATACCAGATACTGGTTGGCTTTTTGTCATTACCAGCAAAATGATTACAA
AAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTT
TAGGGAAGAACCACAAGGATACTCTGAATACCAGACACATGTTGGCTTTT
TGTTATCACCAACAAAATGATTACCAAAAATCCATACCAATTTTCCAGCA
TGTAGCCAACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTC
TGAATACCAGATACTGGTTGGCTTTTTGTTATTACGAACAAAATGATTAC
CAAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCAC
TTTAGGGAAGAACCACAAGGATACTCTGAATACCAGATACTGGTTGGCTT
TTTGTTATCACCAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAG
CATGTAGCCGACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATAC
TCTGAATACCAGACACATGTTGGCTTTTTGTTATCACCAACAAAATGATT
ACCAAAAAGCCATACCAATTTTCCAGGATGTAGCCGACAAACAAACCTCC
ACTATATTCAAGATGGCTGCCGCTTCTACATCATCTGAAAAACTCAATTC
TTGTGTAAAAACAGATGTATTTTTATCCCACGATTGGGGTGAAGATGGTA
TAACTAATCACAAAAAGGTCGAGAAAATCAACGAGGCGATCAAAGGATTG
GGATATGTGACTTGGTTCGACAATGAACGAATGGTTGGTAACGTACGAGA
ACAGATGGCAAACGGAATCCTAAACACCAAATGTTTTATTGCTTTCATTA
CAAAGCATTATCATAACAAAGTGGTCTTCGGTCTTGATAAAGATAATTGT
CGagctgaatttaattttgccAGCATGAAAGTCCCAATGGTTGCTGTACT
TCTTGATCCATCGATGAAAAACCCTCATGATTGGAAAGGGAATCTAGGAT
TCACACTCGCAACACAATTATATATTGATTTGTCTGGTGATATCAATGAT
GAAAAGTATTTGACGAATCAACTCAAACTTCTGAAAAAAGATTTGACGTC
CAAAGGAATCTTCCCAAATAAATTAGAAGAGACAGCGAATGAATTGAAAG
TTTTAGATATTCGATGGGAAGGCGATCCTTTGGTGAAGAACGCTGTTGAA
AATCAAGAAACAATACAGGATGAAAGCATTGAGAAATTGAAGGGGAAAGT
AAATAATCTACGGAGAAATGGGGAGTGGGCCGAAGCTATTCCTCTTTATG
AAGATATTATTAAGAAACAATCTTCCACTTTCGGGGAGAACCACAAGGAT
ACTCTGAATACCAGATACTGGTTGGCTTTTTGTCATTACCAGCAAAATGA
TTACAAAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTT
CCACTTTAGGGAAGAACCACAAGGATACTCTGAATACCAGACACATGTTG
GCTTTTTGTTATCACCAACAAAATGATTACCAAAAATCCATACCAATTTT
CCAGCATGTAGCCAACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGG
ATACTCTGAATACCAGATACTGGTTGGCTTTTTGTTATTACGAACAAAAT
GATTACCAAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTC
TTCCACTTTAGGGAAGAACCACAAGGATACTCTGAATACCAGATACTGGT
TGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGCCATACCAATT
TTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAGGGAAGAACCACAA
GGATACTCTGAATACCAGACACATGTTGGCTTTTTGTTATCACCAACAAA
ATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCCGACAAACAA
ACCTCCACTATATTCAAGATGGCTGCCGCTTCTACATCATCTGAAAAACT
CAATTCTTGTGTAAAAACAGATGTATTTTTATCCCACGATTGGGGTGAAG
ATGGTATAACTAATCACAAAAAGGTCGAGAAAATCAACGAGGCGATCAAA
GGATTGGGATATGTGACTTGGTTCGACAATGAACGAATGGTTGGTAACGT
ACGAGAACAGATGGCAAACGGAATCCTAAACACCAAATGTTTTATTGCTT
TCATTACAAAGCATTATCATAACAAAGTGGTCTTCGGTCTTGATAAAGAT
AATTGTCGagctgaatttaattttgccAGCATGAAAGTCCCAATGGTTGC
TGTACTTCTTGATCCATCGATGAAAAACCCTCATGATTGGAAAGGGAATC
TAGGATTCACACTCGCAACACAATTATATATTGATTTGTCTGGTGATATC
AATGATGAAAAGTATTTGACGAATCAACTCAAACTTCTGAAAAAAGATTT
GACGTCCAAAGGAATCTTCCCAAATAAATTAGAAGAGACAGCGAATGAAT
TGAAAGTTTTAGATATTCGATGGGAAGGCGATCCTTTGGTGAAGAACGCT
GTTGAAAATCAAGAAACAATACAGGATGAAAGCATTGAGAAATTGAAGGG
GAAAGTAAATAATCTACGGAGAAATGGGGAGTGGGCCGAAGCTATTCCTC
TTTATGAAGATATTATTAAGAAACAATCTTCCACTTTCGGGGAGAACCAC
AAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTCATTACCAGCA
AAATGATTACAAAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAAAC
AGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGAATACCAGACAC
ATGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAATCCATACC
AATTTTCCAGCATGTAGCCAACAAACAGTCTTCCACTTTAGGGAAGAACC
ACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTTATTACGAA
CAAAATGATTACCAAAAAGCCATACCAATTTTCCAGCATGTAGCCGACAA
ACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGAATACCAGAT
ACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGCCATA
CCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAGGGAAGAA
CCACAAGGATACTCTGAATACCAGACACATGTTGGCTTTTTGTTATCACC
AACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCCGAC
AAACAAACCTCCACTATA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.14039MSTRG.14039Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14039.4.p1.exon1MSTRG.14039.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14039.4.p1.exon2MSTRG.14039.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.14039.4.p1.exon3MSTRG.14039.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.14039.4.p1MSTRG.14039.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000115_pilongenomesc0000115_pilon:277628..281586 +