|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000115_pilon:277560..282369+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.14039.1.p1 ID=MSTRG.14039.1.p1|Name=MSTRG.14039.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4810bp|location=Sequence derived from alignment at sc0000115_pilon:277560..282369+ (Clytia hemisphaerica_ch_hm2_pilon)
AGGTTTTGGTTTTCTACACATAagttaaaagaaataaaaattgagtGAAG
TAGGAAGCATAGACGATTGTTCAAGATGGCTGCCGCTTCTACATCATCTG
AAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTTATCCCACGATTGG
GGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGAAAATCAACGAGGC
GATCAAAGGATTGGGATATGTGACTTGGTTCGACAATGAACGAATGGTTG
GTAACGTACGAGAACAGATGGCAAACGGAATCCTAAACACCAAATGTTTT
ATTGCTTTCATTACAAAGCATTATCATAACAAAGTGGTCTTCGGTCTTGA
TAAAGATAATTGTCGagctgaatttaattttgccAGCATGAAAGTCCCAA
TGGTTGCTGTACTTCTTGATCCATCGATGAAAAACCCTCATGATTGGAAA
GGGAATCTAGGATTCACACTCGCAACACAATTATATATTGATTTGTCTGG
TGATATCAATGATGAAAAGTATTTGACGAATCAACTCAAACTTCTGAAAA
AAGATTTGACGTCCAAAGGAATCTTCCCAAATAAATTAGAAGAGACAGCG
AATGAATTGAAAGGTAATTTTTGTCTCGTTTTGTAGAAATCGTATCGATA
TAAAGGCCAGCTTTAAGAAAACTAACCACCCAAGAAATTATTGactaaat
tttcttaatttcaacTATAAACATACGagtaaaagtgtgataactggttt
aaCGATTTAACGGATTATCTTTTTGTACGGCCCATTTAAAATGTTGATTT
CATTATATTCACTTTAATTACAAAATCATTTCCCTCCCTTTTCTACGGAA
GCCCATTAGTGCCATTTAGATTTTCCTTTAGTTTTTTAAcgacgaaacta
aaaaaattgacgacaaaactaaaaaattgacaacaaaaataaaaaattga
cgacgaaaatgaaaaattgacgacgaaactgaaaataaattgttactTTG
TTTCGTTGTCgaaaaaattgacaacgaaactaaaaaaattgacgacaaaa
ctaaaaaattgacgacgaaactgaaaataaattgttacttcgtttcgtcg
tcgaaaaaaaTCGACAACGAAACtagaaaatatttgagaatGGTGGCCCT
GGTGGTTGAAAATTAATTCTGGTGGATTATGAAGTGGGATTTGATAGTTC
CGGTGAATGCAATGCTGGTGAAGATGGTTCTTGTGAATGAGATGCTGGTA
ATGATGAACTAGAATAAGGATGTGATGGTGGCCCGGGGATGCTGGCCCGG
GGATGGTGGAGATTGTTGGAATCAACGGTGTCAATGGAATCATTGGAATT
AATCAATagcaaatgatggaatcaatggagcagatgatggaatcaataat
ggagcagatgatggaatcaatggtgcaaatgATGAAATAAATAGAACAGA
TGATGGAATCCATTGTGCGGGTGATGGAACCAACTATTGATTCTATCATT
TGCACCattcatttcatcattgattagtTCCAATGATTTCATTGACACCC
CAGTGACTCCAACATCTCCACTATCACATCCTTATTCTGGTTCATCATTG
CCAGCATCTTATTCACAAGAACCATCTTCACCagcattgcattcaccaga
actatCAAATCCATTTTCAGAATCCACCAGAATCAATaatatttccattt
ttcaaccatcagggccaccattttcaattttttttagttttatagttcga
ttttttcgacgacgaaaagaagtaacaatttattttcagtttcgtcgtca
atttttcagtttcgtcgtcaatttctttagtttcgtcgttAAAAAACTAA
AGGAGAATCTAAATGGCACTAATGGGCTTCCgtacttttttgtttattta
ttcgGTTATTCAATTCGCATTTTACGTTTTTGTGATAAGAACATTCATTC
ATGTTCACGTTATCGATATCTGAAATTACCCGAAAATGCGAAATCTTTCG
GTATCCGAattttcttgtcgaatatctcAAAAATTATTATACTCAAGTCA
ACGCCCCAGTAATAAATATTACGCTTACAGTTTTAGATATTCGATGGGAA
GGCGATCCTTTGGTGAAGAACGCTGTTGAAAATCAAGAAACAATACAGGA
TGAAAGCATTGAGAAATTGAAGGGGAAAGTAAATAATCTACGGAGAAATG
GGGAGTGGGCCGAAGCTATTCCTCTTTATGAAGATATTATTAAGAAACAA
TCTTCCACTTTCGGTGAGAACCACAAGGATACTCTGGATACCAGATACTG
GTTGGCTCTTTGTCATTGCCAGCAAAATGATTACCAAAAAGCCATACCAA
TTTTCCAGGATGTAGCCGACAAACAATCTTCCACTTCAGGTGAAAACGAC
AAGAATACTCTGAATACCAGATACTGCTTGGCTCTATGTTATTACGAACA
AAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTAGCTGACAAAC
GAACTTCCACTTTGGGTGAGAACCACGAGGATACTCTGAATACCAGATAC
TGCTTGGCTCTTTGTTATTACGAACAAAATGATTACCAAAAAGCCATACC
AATTTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTAGGTGAAAATG
AAGCAGATACTCTGGATACCAGATACTGGTTGGCTCTTCGTCATTACCAG
CAAAATGATTACAAAAAAGCCATACCAATTTTCCAGGATGTAGCCGAGAA
ACAATCTTCCACTTTAGGTGAGAACCACGAGGATACTCTGAATACCAGAT
ACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGCCATA
CCAATCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTAGGTGAAAA
TGAAGCAGATACTCTGGATACCAGATACTGGTTGGCTCTTTGTCATTACC
AGCAAAATGATTACAAAAAAGCCATACCAATTTTCCAGGATGTAGCCGAG
AAACAATCTTCCACTTTAGGTGAGAACCACGAGGATACTCTGAATACCAG
ATACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAAGCCA
TACCAATCTTCCAGGATGTAGCTGACAAACGAACTTCCACTTTGGGTGAG
AACCACGAGGATACTCTGAATACCAGATACTGCTTGGCTCTTTCTTATTT
CAAACAAAATGATTACCAAAAAGCCATACCAATCTTCCAGGATGTAGCCG
ATAAACGAACTTCCACCATAGGGGAGAACCACGAGGATACTCTGAATACC
AGATACTGGTTGGCTCGTTGTTATTACCAACAAAATGATTACCAAAAATC
CATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTAGGGG
AGAACCACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTCAT
TACCAGCAAAATGATTACAAAAAAGCCATACCAATTTTCCAGCATGTAGC
CGACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGAATA
CCAGACACATGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAAAA
TCCATACCAATTTTCCAGCATGTAGCCAACAAACAGTCTTCCACTTTAGG
GAAGAACCACAAGGATACTCTGAATACCAGATACTGGTTGGCTTTTTGTT
ATTACGAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGCATGTA
GCCGACAAACAGTCTTCCACTTTAGGGAAGAACCACAAGGATACTCTGAA
TACCAGATACTGGTTGGCTTTTTGTTATCACCAACAAAATGATTACCAAA
AAGCCATACCAATTTTCCAGCATGTAGCCGACAAACAGTCTTCCACTTTA
GGGAAGAACCACAAGGATACTCTGAATACCAGACACATGTTGGCTTTTTG
TTATCACCAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATG
TAGCCGACAAACAAACCTCCACTATAGGGGAGAACCACGAGGATACTCTG
AATACCAGATACTGGTCGGCTCGTTGTTATTTCAAACAAAATGATTACCA
AAAAGCCATACCAATTTTCCAGGATGTAGCTGAGAAACAAACTTCAACTT
TGGGTGAGAACGACGCAGATACTCTGAATACCAGACACATGTTGGCTCGT
TgttgttacaaacaaaattaTTACCAAAAAGCCATACCAATTTTCCAGGA
TGTAGCTGAGAAACAATCTTCCACTTTGGGTGAGAACGATAAGAATACTC
TGAATACCAGATACTGGTTAGCTGGTTGTTATTTCAAACAAAATGATTAC
CAAAAAGCCATACTTATACTAGAAGACGTCTTTAGAAGACAAACCTCAAC
GTTAGGAGGAAACCACAACCAAACTGTTCGAAGCAAGGGACTTTTAAATA
CTTGCAACGAATTGATTAATTAGTAAAATAACAATACAttttgacttaat
atttttagttttatagttctatagttttattgtctttttttgaattatAG
TCGAACGTGCACAGCGCCCTGTGTTTAACTCGAGCAAAAGTTctagccaa
atccgaccttttttgaaggcTTCAGGCTCCCCAAAGAATTTTTGATATGC
AggcagacattctcagatttcTAGCCCGAGCTAAAgggaaaaaattgaag
atgagaacataatttttatttacttttaatcATACATTCCGTCATCATTT
TTGTGGTAAAATTTCAGCATTGCTTATATTCATGTaagcttgcatccgtt
tttggTTTGG Coding sequence (CDS) from alignment at sc0000115_pilon:277560..282369+ >MSTRG.14039.1.p1 ID=MSTRG.14039.1.p1|Name=MSTRG.14039.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3879bp|location=Sequence derived from alignment at sc0000115_pilon:277560..282369+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGCCGCTTCTACATCATCTGAAAAACTCAATTCTTGTGTAAAAAC
AGATGTATTTTTATCCCACGATTGGGGTGAAGATGGTATAACTAATCACA
AAAAGGTCGAGAAAATCAACGAGGCGATCAAAGGATTGGGATATGTGACT
TGGTTCGACAATGAACGAATGGTTGGTAACGTACGAGAACAGATGGCAAA
CGGAATCCTAAACACCAAATGTTTTATTGCTTTCATTACAAAGCATTATC
ATAACAAAGTGGTCTTCGGTCTTGATAAAGATAATTGTCGagctgaattt
aattttgccAGCATGAAAGTCCCAATGGTTGCTGTACTTCTTGATCCATC
GATGAAAAACCCTCATGATTGGAAAGGGAATCTAGGATTCACACTCGCAA
CACAATTATATATTGATTTGTCTGGTGATATCAATGATGAAAAGTATTTG
ACGAATCAACTCAAACTTCTGAAAAAAGATTTGACGTCCAAAGGAATCTT
CCCAAATAAATTAGAAGAGACAGCGAATGAATTGAAAGTTTTAGATATTC
GATGGGAAGGCGATCCTTTGGTGAAGAACGCTGTTGAAAATCAAGAAACA
ATACAGGATGAAAGCATTGAGAAATTGAAGGGGAAAGTAAATAATCTACG
GAGAAATGGGGAGTGGGCCGAAGCTATTCCTCTTTATGAAGATATTATTA
AGAAACAATCTTCCACTTTCGGTGAGAACCACAAGGATACTCTGGATACC
AGATACTGGTTGGCTCTTTGTCATTGCCAGCAAAATGATTACCAAAAAGC
CATACCAATTTTCCAGGATGTAGCCGACAAACAATCTTCCACTTCAGGGG
AGAACCACGAGGATACTCTGAATACCAGATACTGGTCGGCTCGTTGTTAT
TTCAAACAAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGC
TGAGAAACAAACTTCAACTTTGGGTGAGAACGACGCAGATACTCTGAATA
CCAGACACATGTTGGCTCGTTgttgttacaaacaaaattaTTACCAAAAA
GCCATACCAATTTTCCAGGATGTAGCTGAGAAACAATCTTCCACTTTGGG
TGAGAACGATAAGAATACTCTGAATACCAGATACTGGTTAGCTGGTTGTT
ATTTCAAACAAAATGATTACCAAAAAGCCATACTTATACTAGAAGACGTC
TTTAGAAGACAAACCTCAACGTTAGGAGGAAACCACAACCAAACTGTTCG
AAGCAAGGGACTTTTAAATACTTGCAACGAATTGATTAATTAGATGGCTG
CCGCTTCTACATCATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTA
TTTTTATCCCACGATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGT
CGAGAAAATCAACGAGGCGATCAAAGGATTGGGATATGTGACTTGGTTCG
ACAATGAACGAATGGTTGGTAACGTACGAGAACAGATGGCAAACGGAATC
CTAAACACCAAATGTTTTATTGCTTTCATTACAAAGCATTATCATAACAA
AGTGGTCTTCGGTCTTGATAAAGATAATTGTCGagctgaatttaattttg
ccAGCATGAAAGTCCCAATGGTTGCTGTACTTCTTGATCCATCGATGAAA
AACCCTCATGATTGGAAAGGGAATCTAGGATTCACACTCGCAACACAATT
ATATATTGATTTGTCTGGTGATATCAATGATGAAAAGTATTTGACGAATC
AACTCAAACTTCTGAAAAAAGATTTGACGTCCAAAGGAATCTTCCCAAAT
AAATTAGAAGAGACAGCGAATGAATTGAAAGTTTTAGATATTCGATGGGA
AGGCGATCCTTTGGTGAAGAACGCTGTTGAAAATCAAGAAACAATACAGG
ATGAAAGCATTGAGAAATTGAAGGGGAAAGTAAATAATCTACGGAGAAAT
GGGGAGTGGGCCGAAGCTATTCCTCTTTATGAAGATATTATTAAGAAACA
ATCTTCCACTTTCGGTGAGAACCACAAGGATACTCTGGATACCAGATACT
GGTTGGCTCTTTGTCATTGCCAGCAAAATGATTACCAAAAAGCCATACCA
ATTTTCCAGGATGTAGCCGACAAACAATCTTCCACTTCAGGGGAGAACCA
CGAGGATACTCTGAATACCAGATACTGGTCGGCTCGTTGTTATTTCAAAC
AAAATGATTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCTGAGAAA
CAAACTTCAACTTTGGGTGAGAACGACGCAGATACTCTGAATACCAGACA
CATGTTGGCTCGTTgttgttacaaacaaaattaTTACCAAAAAGCCATAC
CAATTTTCCAGGATGTAGCTGAGAAACAATCTTCCACTTTGGGTGAGAAC
GATAAGAATACTCTGAATACCAGATACTGGTTAGCTGGTTGTTATTTCAA
ACAAAATGATTACCAAAAAGCCATACTTATACTAGAAGACGTCTTTAGAA
GACAAACCTCAACGTTAGGAGGAAACCACAACCAAACTGTTCGAAGCAAG
GGACTTTTAAATACTTGCAACGAATTGATTAATTAGATGGCTGCCGCTTC
TACATCATCTGAAAAACTCAATTCTTGTGTAAAAACAGATGTATTTTTAT
CCCACGATTGGGGTGAAGATGGTATAACTAATCACAAAAAGGTCGAGAAA
ATCAACGAGGCGATCAAAGGATTGGGATATGTGACTTGGTTCGACAATGA
ACGAATGGTTGGTAACGTACGAGAACAGATGGCAAACGGAATCCTAAACA
CCAAATGTTTTATTGCTTTCATTACAAAGCATTATCATAACAAAGTGGTC
TTCGGTCTTGATAAAGATAATTGTCGagctgaatttaattttgccAGCAT
GAAAGTCCCAATGGTTGCTGTACTTCTTGATCCATCGATGAAAAACCCTC
ATGATTGGAAAGGGAATCTAGGATTCACACTCGCAACACAATTATATATT
GATTTGTCTGGTGATATCAATGATGAAAAGTATTTGACGAATCAACTCAA
ACTTCTGAAAAAAGATTTGACGTCCAAAGGAATCTTCCCAAATAAATTAG
AAGAGACAGCGAATGAATTGAAAGTTTTAGATATTCGATGGGAAGGCGAT
CCTTTGGTGAAGAACGCTGTTGAAAATCAAGAAACAATACAGGATGAAAG
CATTGAGAAATTGAAGGGGAAAGTAAATAATCTACGGAGAAATGGGGAGT
GGGCCGAAGCTATTCCTCTTTATGAAGATATTATTAAGAAACAATCTTCC
ACTTTCGGTGAGAACCACAAGGATACTCTGGATACCAGATACTGGTTGGC
TCTTTGTCATTGCCAGCAAAATGATTACCAAAAAGCCATACCAATTTTCC
AGGATGTAGCCGACAAACAATCTTCCACTTCAGGGGAGAACCACGAGGAT
ACTCTGAATACCAGATACTGGTCGGCTCGTTGTTATTTCAAACAAAATGA
TTACCAAAAAGCCATACCAATTTTCCAGGATGTAGCTGAGAAACAAACTT
CAACTTTGGGTGAGAACGACGCAGATACTCTGAATACCAGACACATGTTG
GCTCGTTgttgttacaaacaaaattaTTACCAAAAAGCCATACCAATTTT
CCAGGATGTAGCTGAGAAACAATCTTCCACTTTGGGTGAGAACGATAAGA
ATACTCTGAATACCAGATACTGGTTAGCTGGTTGTTATTTCAAACAAAAT
GATTACCAAAAAGCCATACTTATACTAGAAGACGTCTTTAGAAGACAAAC
CTCAACGTTAGGAGGAAACCACAACCAAACTGTTCGAAGCAAGGGACTTT
TAAATACTTGCAACGAATTGATTAATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000115_pilon | genome | sc0000115_pilon:277560..282369 + |
|
