MSTRG.13984.1.p1 (mRNA) -

Overview
NameMSTRG.13984.1.p1
Unique NameMSTRG.13984.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:757051..760231+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13984.1.p1 ID=MSTRG.13984.1.p1|Name=MSTRG.13984.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3181bp|location=Sequence derived from alignment at sc0000114_pilon:757051..760231+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAATGTTGAAGAGAAACCCTGGTAAAAGCAACCAAGAGTTACATCCTGA
CGATCTGATTGGTTAATATTTGATGACGCCCGCCTACGTCAACGATCTTG
TTCgaccaaatttcttttcttctcaAGAAGTGACGTTAGGGAATGTGACG
CAGTTTTCATCATACAGCTAACACGCAAGAAGTCAAAACGTAACAAACCG
AACAGTAAGAATTCATTATACTTGTATACTGTATTTGAACCTGAACGTAG
agattttgtttgttattttttggaaagaaactTCTTTTTGTAAACCTTTC
AGCATTGGTTCTTAGTATTGAATTAAATTTGAGTGAGAAAAAAGCGAAGA
CTAAGGAATTATTATGGTTATATTAGGTAtgcttttttaaaatttttact
tcaattAAACTTTCAAATATATTGTGAATTTATTGTCTGATTGGTTTAAT
TATTTATTATATCAGGTATGGATGTTGCACAAAGTGGACATGTGTTCCAA
CCACCTATGGGACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTT
GCAGCAGCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTC
AATCAATGCACGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATA
CTGACTCGGAGGCCTTCCTACaggtatttcaaatttttttatacctGTTG
CTTTATGTACCGTGAGATTGTACAAAATCGCGCATGTTCACGTGCGCAAT
TTCGTAAAAATTTTGTCTTTATTACGTGAGTGATTCGTCGCTCTCCACTC
CTCCTtatttcttcctggaaaagcatgtaaaatacaaagttaaataaaaa
caaaaatggtagagtagagctgcgagcagagctgcacagttgcatttttt
aatGATCAGCCCTAGGTCTTTTAttttagggctatgcatgttagcttcca
ctgatgtaagttacccaatctcacggtagtaaAGCTAGACAAATTTTTGG
ACCTGCAcatagttttttgtttgtttttatttttgcgcGTAAAACTTATG
CCAGTTATTAGGAACAGGCAGCTTGCTTGGAATTGGGTTGAAGAATCCCT
TGCAAATCATGAGCTTATTTTTCCCCTTTTTAACTGGTTTAAGTGATGAT
TTGTTGGAGATCATGAAAGTATATTTCATTTTATGGTGAATATCACCAgg
ttttttaagatgaaaatctTCCTTTTTATCTAGGAAAATTCTTGATGACC
TGGCAGCAGATTCTCCAGTCAAGATGGAAAACTATGATGATAATGGAAGT
AGTAATTCTTCAAGTCCTGGTGGACCAGAAGAATTGACAGATAaacaaca
acaagctcaacagcaacatcagcaccagcaacaacagcaacaggctcagc
aacaagcacaacaacaatatcaaagtattcaactcaaTGGCGTAATTGCT
CCCCCATCTTCAGTTGGTAGCACAGTGGTTCAGCTAAATGATGGCCAGGT
ACGTATAATTTAATGGATGAACATAATTCTGCTAGTGTAATACCGGAAGT
TGCTCTAATTCCACTCATCTTTAGATAAGAAGAAATAGAGATATGCATCT
tactaaatttcaaattttacttttcaggCTTACACGATAAAAGGTTCTCT
TCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAG
AAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGGTAAATA
TTGCTTGATTTTTAcaattattttcaccattttatcaAGAACAGTTTCTG
AATCTGAAACTGAATTTCTTTAACAAATTAGGAAAGTTAGCAGAAAACAC
CAGAGACCAAATTAAGGCATCGCATTTTGCAATTTGTGAtgccttttttg
gattttttacaagctaaaaatttaTCCATTTCAGGATGAAAAAACTATGC
TTGCTAAATTCAATGCATGAAATACTGCTACTTTCTAAGTTAACCAAACA
GCTGAttgatcttgaatttaaaagctCCAAATCAGCATTTTAGTCAGTAT
AACATTAACtaaatttatgattttgttcatttttaggGAAGCAGCCAGAG
AATGCAGGcggaagaaaaaagaatatgtaaAATGTCTAGAAAATAGAGTT
GCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAATCTCT
AAAGGACTTATACTGTAGTAAAGGAGATTAAGTTGGTGGTTTGTGTCATA
ATATAGAGCTGATGTTTGTAAATAGACGTATGTTTTAGAGTTTTTATGGt
ttaaatatcttttttctTAACTGATgactaaaaacaacaaaatgatattt
ttattagCACTTTAGAAGGATATTATTTTTcatatgaatttaaaaaaagt
gaaatcttATTTGTTAAGTGTACAAAAATTTGGAGTGGAGTGGGTCAGCC
TTACTTTCTTTGCATGAATCAATTGCACACTAATTTACAATCAACGTAAT
TCCTTATCCTGGACAAGGAAATGAGTGATTTAGCtgaattatattttcat
tttaattacTTTCTTATCTGTTTAGCTCAACAGTTTGTTATCATCAGAGC
AAACCTTTTAAGATGACATCAAATATTATTtcggtcaatttttcatttat
tttcaaaacccATGTTGCAATTTTCCTGATGTCATATTGACTGTTTGTTT
TATGATTAAATCTGTTTACAAATTTGTTCCCTAAACAAGATGATGTTTTC
ATCTAAATGGATTTctaaacgtcaattgacgtcaAGTATCGTTAAAGTGG
CTTAAGACCCTTCACTTAGATTTTGTGCACGGTTAATAATAATGtattat
ttttcagtttatatatattttttatcgtctcaatttatccacttttcgtg
cttttctttctttttttttgttatggGAATTTTGGAATTGTTTGTTAAGT
CCTACCCGGTTCcatgttttatttgtttcaatattCTGGTGTTTTTGCTT
TGGTATGcattagtttttttatatatttgtttGTCTGTTTTTGAGCCTGT
ATTAATACTGTAAATATTTTACATTATCTCGATAATATTAATAACGAGTC
CTTTCCGTGACAAACTTATTATTGTACATACAATATACCTGTATCCTTAC
aaccaaaatacaaaattattaCCAAATTAAA

Coding sequence (CDS) from alignment at sc0000114_pilon:757051..760231+

>MSTRG.13984.1.p1 ID=MSTRG.13984.1.p1|Name=MSTRG.13984.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2928bp|location=Sequence derived from alignment at sc0000114_pilon:757051..760231+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACCACC
TCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCA
TTCAAACAAATCAACAATTACAGCAGCAACTTCAATCAATGCACGATAAT
GCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCCTTC
CTACagGAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAGATGG
AAAACTATGATGATAATGGAAGTAGTAATTCTTCAAGTCCTGGTGGACCA
GAAGAATTGACAGATAaacaacaacaagctcaacagcaacatcagcacca
gcaacaacagcaacaggctcagcaacaagcacaacaacaatatcaaagta
ttcaactcaaTGGCGTAATTGCTCCCCCATCTTCAGTTGGTAGCACAGTG
GTTCAGCTAAATGATGGCCAGgCTTACACGATAAAAGGTTCTCTTCCTGT
TGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAGAAG
CAACTAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCAGCCAGA
GAATGCAGGcggaagaaaaaagaatatgtaaAATGTCTAGAAAATAGAGT
TGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAATCTC
TAAAGGACTTATACTGTAGTAAAGGAGATTAAATGGATGTTGCACAAAGT
GGACATGTGTTCCAACCACCTATGGGACCACCTCCGAGCTCTCTTAGCGA
AAAGTCAGCTATTTTGCAGCAGCAGTCGGTCATTCAAACAAATCAACAAT
TACAGCAGCAACTTCAATCAATGCACGATAATGCTGAAAATAACAGGCAG
AAAAGTAGAGAGATACTGACTCGGAGGCCTTCCTACagGAAAATTCTTGA
TGACCTGGCAGCAGATTCTCCAGTCAAGATGGAAAACTATGATGATAATG
GAAGTAGTAATTCTTCAAGTCCTGGTGGACCAGAAGAATTGACAGATAaa
caacaacaagctcaacagcaacatcagcaccagcaacaacagcaacaggc
tcagcaacaagcacaacaacaatatcaaagtattcaactcaaTGGCGTAA
TTGCTCCCCCATCTTCAGTTGGTAGCACAGTGGTTCAGCTAAATGATGGC
CAGgCTTACACGATAAAAGGTTCTCTTCCTGTTGGATTGGAAAGTGCAAC
GCTAGCGTCTCCTCAACAAATGGCAGAAGAAGCAACTAGGAAAAGAGAAC
TAAGGTTATACAAAAATAGgGAAGCAGCCAGAGAATGCAGGcggaagaaa
aaagaatatgtaaAATGTCTAGAAAATAGAGTTGCAGTACTAGAAAACCA
AAATAAAGCTCTAATAGAAGAACTAAAATCTCTAAAGGACTTATACTGTA
GTAAAGGAGATTAAATGGATGTTGCACAAAGTGGACATGTGTTCCAACCA
CCTATGGGACCACCTCCGAGCTCTCTTAGCGAAAAGTCAGCTATTTTGCA
GCAGCAGTCGGTCATTCAAACAAATCAACAATTACAGCAGCAACTTCAAT
CAATGCACGATAATGCTGAAAATAACAGGCAGAAAAGTAGAGAGATACTG
ACTCGGAGGCCTTCCTACagGAAAATTCTTGATGACCTGGCAGCAGATTC
TCCAGTCAAGATGGAAAACTATGATGATAATGGAAGTAGTAATTCTTCAA
GTCCTGGTGGACCAGAAGAATTGACAGATAaacaacaacaagctcaacag
caacatcagcaccagcaacaacagcaacaggctcagcaacaagcacaaca
acaatatcaaagtattcaactcaaTGGCGTAATTGCTCCCCCATCTTCAG
TTGGTAGCACAGTGGTTCAGCTAAATGATGGCCAGgCTTACACGATAAAA
GGTTCTCTTCCTGTTGGATTGGAAAGTGCAACGCTAGCGTCTCCTCAACA
AATGGCAGAAGAAGCAACTAGGAAAAGAGAACTAAGGTTATACAAAAATA
GgGAAGCAGCCAGAGAATGCAGGcggaagaaaaaagaatatgtaaAATGT
CTAGAAAATAGAGTTGCAGTACTAGAAAACCAAAATAAAGCTCTAATAGA
AGAACTAAAATCTCTAAAGGACTTATACTGTAGTAAAGGAGATTAAATGG
ATGTTGCACAAAGTGGACATGTGTTCCAACCACCTATGGGACCACCTCCG
AGCTCTCTTAGCGAAAAGTCAGCTATTTTGCAGCAGCAGTCGGTCATTCA
AACAAATCAACAATTACAGCAGCAACTTCAATCAATGCACGATAATGCTG
AAAATAACAGGCAGAAAAGTAGAGAGATACTGACTCGGAGGCCTTCCTAC
agGAAAATTCTTGATGACCTGGCAGCAGATTCTCCAGTCAAGATGGAAAA
CTATGATGATAATGGAAGTAGTAATTCTTCAAGTCCTGGTGGACCAGAAG
AATTGACAGATAaacaacaacaagctcaacagcaacatcagcaccagcaa
caacagcaacaggctcagcaacaagcacaacaacaatatcaaagtattca
actcaaTGGCGTAATTGCTCCCCCATCTTCAGTTGGTAGCACAGTGGTTC
AGCTAAATGATGGCCAGgCTTACACGATAAAAGGTTCTCTTCCTGTTGGA
TTGGAAAGTGCAACGCTAGCGTCTCCTCAACAAATGGCAGAAGAAGCAAC
TAGGAAAAGAGAACTAAGGTTATACAAAAATAGgGAAGCAGCCAGAGAAT
GCAGGcggaagaaaaaagaatatgtaaAATGTCTAGAAAATAGAGTTGCA
GTACTAGAAAACCAAAATAAAGCTCTAATAGAAGAACTAAAATCTCTAAA
GGACTTATACTGTAGTAAAGGAGATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13984MSTRG.13984Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13984.1.p1MSTRG.13984.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13984.1.p1.exon1MSTRG.13984.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13984.1.p1.exon2MSTRG.13984.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13984.1.p1.exon3MSTRG.13984.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13984.1.p1.exon4MSTRG.13984.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13984.1.p1.exon5MSTRG.13984.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:757051..760231 +