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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000114_pilon:717020..720942+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.13979.12.p1 ID=MSTRG.13979.12.p1|Name=MSTRG.13979.12.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3923bp|location=Sequence derived from alignment at sc0000114_pilon:717020..720942+ (Clytia hemisphaerica_ch_hm2_pilon)
GCAGAATGCTATTTGttatgaaatttcaaatataaaaCTAGCGTTAATGT
ATTTAACAGCGCAGTACGAATGCAGCAAtcgaaaatagtttttttcagAC
ATTTTGTATAGAAATAACTTTTATTCGTATAGTTCGTTCACCAAGTCATG
TCATGCAGTTTCAGTGACGTTCGGATggacaaataaaattttttatttgg
ttaatATTTTGTATGGATCTAGGTCAGAATTGCGAGGTAATATTTTGGAA
TGTATTTTACTTACATGGAGTTTTAACGAGGATTGGGATCTAGTTTACAG
CACCGAGCACGAAGAAGATGTCATTGCGCATTCGACACTATTGAACTTCT
GGGGCGTTAGGATTAATGAGTGTTTTCAAACATAAGGCTTGTATTTTCAG
TTGGaattcaaaaaaggaaaattcaaaacataaaacttGAGAGAATTATA
GCTTTTGCAATATAACAATAGCCGACATCCTGGCGTGTTGACAAATTAGG
ATTTTTGCAGCAGTACAGCTTTTCATGTTACTAACAAATACAATAGTGAT
TAGCATCAGAGCTAGGATCTGATTAAGAGGGATCATATAAGTTCCTAATG
TgtacataaaaaaaattgtatgcGCGTGTAGaaaatgctaccaaaaatac
cttgaaaatctaaaagaaagtaaaacctgtaaagaccaaagTTCATTTTA
ATGCAAAAGTCATTAATAGCTTTGTTTGAATACTTCTGCTTGTAAAGATT
CGGtttaaaaaagtcttttttagTGTAGAAATTCTTAGTACAGTAGTCGG
AGACAGTAGCTAATTGAGTGTATTATCGTGTCTTTCAGTAATCAGGTACA
gtttatcattaaaaaaacttaaatcaTGAGAATATTGTTTATTTGATGTT
ACTGATGAGTTCAAAATCTCTACTTCTGCAACAGTTACAGACGGACAATA
ActctacattttttaaataggtGAAACAACAATCTCTCTCTCAAAATTTT
AGTACAAGGTGATGAAATACATGTTACAAGACAGTTGATATAGAAATAAC
TCAATTATCACTTTTTCCCTAAAGGGAGTGGTAATACAAAACGGAGATCG
GCGTTTTGATATAAATAATGGGGCACAAAGCGTTCTCGATCAAGGTGTTG
AACAAAGTGTCAGATTTAATATCAATTTGTCAACCGTTTCACCAAACAAA
ACTTGACTCTAAAcatatatacaaaaaaattgtttgaaagttGTTAACAA
CAAAAAACTGTCAAATAATATGGAAGACATTAAGACTTCTAAAAACTTTT
GTGGTTTTTTAAAGAGATCAATTCGCTGTGAATGAAAAGATAAAGGATGA
CACACTAtgaatgaatttcaaaaaaaatacatttgagTGAATTTGGagag
attttcgaataaaaaactAATCTTGAAGAAAAGGAATAAATCTCCAGTGT
CCGGCAAAGTTCTGAAAACAGTACTGGAGCTTTCAAAGCAACAAGGCATC
TTAGACTTTTAAAGAAGACCATTCTACTCGTGTTTGCTAGAGTTTTGACT
TGTTTAAGCGGTTGCTAAAAAGTCACTAAAGACAAGTATAGACTTAGAGA
AACAAAAACTTAAAGGCTatgtttgtttctttttttagcCTGCAGTATCG
CCACCACCGGAGAAGAAAGGAATCAAGATGATCCGGACTTGTCAATTGTT
CTTGGTTCTCGTCCATAGAACATTCTTATTTGCAGCTGTTCTCATTGGAG
GAACCTACGCCATCAGAGCTATCGAGAACCACTATCGAGAATCGATTTCT
CATATGGAGCTGAAAGATGCAGCTGAATATTGCTATACCATTCTAACGAC
CATAGGTAAGtcttaatttaaaatttgaatgttaAAGAATGTTAATCATG
ACAGTAGAGCCATCGCTTTAATCAAGTTGGAGAATAAAAGAAGTTACTGA
AACAACATAAGAGTTTTGTAAGGAAAACAGTATTCACTACaaaaaaaCTT
ATTAAAATTTGACCATTTCATATCAACACCAAGGGAACTCACAACTTGAC
ATCACTTCACTTGCTAAACTTGAGCTTCCAATGCCGTGATAgcaattgaa
aattgatccctCTAGTATAGAAATTCTTGGCTACCAATtatctcaaaggt
aacgaatcaaATTTACACAACTACTTAGTAATCATCTTTTGCTCGTTCAA
TTATTTCAGGTTACGGCCGTGAGAAAACCCTCCCTACATCAGACTGGGGC
AAAGTGTTCACCATTGTCTACGCAATCATTGGTATACCAGTCGCCATTTT
CACTGTCGGAGCATACGGAGCATTCCTGAAGCATTGTGTGTTGAAGTTAA
TCATTGGTTTAGAGCACTGTTGTTGCTCATGCTGGCAAGGCAAGAAAATG
AATCTCAAAGTGCTTATTATATTGATTCTCCTTTTCATTGcagagttctt
ttgttttggagtCTACGTTTGCTGGTTGGAAGACAACAACCAATGGAatt
atttagattctgtttacAGTTGGTTTCTCACCATGACAACCATTGGATTT
AAACAACACAACCCGTACCCAGACCACTTGGATCTGTTACACGCCTTGGC
CTACCTGGTTACCAGTCTATTCAGCATCATAACTCTGGCCGCCATCTTTC
AAACCGTTCAACAAATGATTGACGCTGTCCACAACCAAGATCGCAGCATC
TGCGCCATGTTGTTTTGTTGTTATAGCAACAATAAGAAAGATGCATACCC
AATGGATAAATACAATTCGAATCATAGTATGCGATATGCAGAATATCCTC
ATGAATAAACAGACCATTAAAGCACTTATGTTGAGAAAATATTAACCAAA
ATATTTATGGATGGTTGGCTGGAGATTTCTGGAAGtgaataattctaaaa
atgggattttaagactttcagacttttaagagtaaaaaaacaattattca
AAATGGACAAAAGAGCTGAATCGAGAGTCaagatttttcatgaaattatt
caacatgaatTAAGCTGATGAATAATGATTAATAACTGTAACTgcaaaca
aatattttcataacATATGGTCTTGGTTTGCAATTTGAGTTTGAATTCAA
AAGTTCACACCTGAAAGTTGCATTCAAGAAGCTaaactttcaattaaaaa
gcTATAATAGAGTATGGTTTTAGATATGAAAACGTATCAATTTCCTAGAT
TAATAAATATAACAAAAGTTAGATAGTCGTTAATTGTAAAGAGTAATCTT
AAAAACTTCCATCATTTTTTGAAGCGTTTTGAAAACTTGAAGACCTTAGt
ttttttGATCAATAATGCAATATGAAACGAAGCCAAATTTGATCAAATCT
GGTATATCTTgaagttgtgatttttttgcattggtatttaaatttaaaag
atcCCTTGCATTAATCAGTGACTTCAAGCTGGGTACAGTTGAATGAACCA
TaaaaaaaCTTGCCTTTTACTGGACTTTTAAGCCAAAAAGGCACAAAAAG
AGTAATTTTGCAGCAAAAGTAGAACTTATTTTGAAATGACAATAAATATC
ATaacaatttagattttttttatcaaaagatgtattatattataaaagaa
gaagttattataaaattttagaataaccaTTTTTAAGCAGTTAAAACTGC
CTTGAAATAGTTGTGTAGCCTCTTGGTATAACACTTGctgtacaaaaatt
tttgttttgctttgtcgtttttgctttttttaagaatagaaattttagtt
tcttttttctcattttatttgtttttttattgataatgtgAATATATAAC
AAATTTAAACAAGGAAAACATGGAAGGTTATTCATATTTAATGACATAAA
GGGATAAACCAGCCACACTAAAATTTAGTCAAATTCTTAGGACAAAAACA
CATTCATTTAAATCCAAAAAGCT Coding sequence (CDS) from alignment at sc0000114_pilon:717020..720942+ >MSTRG.13979.12.p1 ID=MSTRG.13979.12.p1|Name=MSTRG.13979.12.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2520bp|location=Sequence derived from alignment at sc0000114_pilon:717020..720942+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATCTAGGTCAGAATTGCGAGcCTGCAGTATCGCCACCACCGGAGAA
GAAAGGAATCAAGATGATCCGGACTTGTCAATTGTTCTTGGTTCTCGTCC
ATAGAACATTCTTATTTGCAGCTGTTCTCATTGGAGGAACCTACGCCATC
AGAGCTATCGAGAACCACTATCGAGAATCGATTTCTCATATGGAGCTGAA
AGATGCAGCTGAATATTGCTATACCATTCTAACGACCATAGGTTACGGCC
GTGAGAAAACCCTCCCTACATCAGACTGGGGCAAAGTGTTCACCATTGTC
TACGCAATCATTGGTATACCAGTCGCCATTTTCACTGTCGGAGCATACGG
AGCATTCCTGAAGCATTGTGTGTTGAAGTTAATCATTGGTTTAGAGCACT
GTTGTTGCTCATGCTGGCAAGGCAAGAAAATGAATCTCAAAGTGCTTATT
ATATTGATTCTCCTTTTCATTGcagagttcttttgttttggagtCTACGT
TTGCTGGTTGGAAGACAACAACCAATGGAattatttagattctgtttacA
GTTGGTTTCTCACCATGACAACCATTGGATTTAAACAACACAACCCGTAC
CCAGACCACTTGGATCTGTTACACGCCTTGGCCTACCTGGTTACCAGTCT
ATTCAGCATCATAACTCTGGCCGCCATCTTTCAAACCGTTCAACAAATGA
TTGACGCTGTCCACAACCAAGATCGCAGCATCTGCGCCATGTTGTTTTGT
TGTTATAGCAACAATAAGAAAGATGCATACCCAATGGATAAATACAATTC
GAATCATAGTATGCGATATGCAGAATATCCTCATGAATAAATGGATCTAG
GTCAGAATTGCGAGcCTGCAGTATCGCCACCACCGGAGAAGAAAGGAATC
AAGATGATCCGGACTTGTCAATTGTTCTTGGTTCTCGTCCATAGAACATT
CTTATTTGCAGCTGTTCTCATTGGAGGAACCTACGCCATCAGAGCTATCG
AGAACCACTATCGAGAATCGATTTCTCATATGGAGCTGAAAGATGCAGCT
GAATATTGCTATACCATTCTAACGACCATAGGTTACGGCCGTGAGAAAAC
CCTCCCTACATCAGACTGGGGCAAAGTGTTCACCATTGTCTACGCAATCA
TTGGTATACCAGTCGCCATTTTCACTGTCGGAGCATACGGAGCATTCCTG
AAGCATTGTGTGTTGAAGTTAATCATTGGTTTAGAGCACTGTTGTTGCTC
ATGCTGGCAAGGCAAGAAAATGAATCTCAAAGTGCTTATTATATTGATTC
TCCTTTTCATTGcagagttcttttgttttggagtCTACGTTTGCTGGTTG
GAAGACAACAACCAATGGAattatttagattctgtttacAGTTGGTTTCT
CACCATGACAACCATTGGATTTAAACAACACAACCCGTACCCAGACCACT
TGGATCTGTTACACGCCTTGGCCTACCTGGTTACCAGTCTATTCAGCATC
ATAACTCTGGCCGCCATCTTTCAAACCGTTCAACAAATGATTGACGCTGT
CCACAACCAAGATCGCAGCATCTGCGCCATGTTGTTTTGTTGTTATAGCA
ACAATAAGAAAGATGCATACCCAATGGATAAATACAATTCGAATCATAGT
ATGCGATATGCAGAATATCCTCATGAATAAATGGATCTAGGTCAGAATTG
CGAGcCTGCAGTATCGCCACCACCGGAGAAGAAAGGAATCAAGATGATCC
GGACTTGTCAATTGTTCTTGGTTCTCGTCCATAGAACATTCTTATTTGCA
GCTGTTCTCATTGGAGGAACCTACGCCATCAGAGCTATCGAGAACCACTA
TCGAGAATCGATTTCTCATATGGAGCTGAAAGATGCAGCTGAATATTGCT
ATACCATTCTAACGACCATAGGTTACGGCCGTGAGAAAACCCTCCCTACA
TCAGACTGGGGCAAAGTGTTCACCATTGTCTACGCAATCATTGGTATACC
AGTCGCCATTTTCACTGTCGGAGCATACGGAGCATTCCTGAAGCATTGTG
TGTTGAAGTTAATCATTGGTTTAGAGCACTGTTGTTGCTCATGCTGGCAA
GGCAAGAAAATGAATCTCAAAGTGCTTATTATATTGATTCTCCTTTTCAT
TGcagagttcttttgttttggagtCTACGTTTGCTGGTTGGAAGACAACA
ACCAATGGAattatttagattctgtttacAGTTGGTTTCTCACCATGACA
ACCATTGGATTTAAACAACACAACCCGTACCCAGACCACTTGGATCTGTT
ACACGCCTTGGCCTACCTGGTTACCAGTCTATTCAGCATCATAACTCTGG
CCGCCATCTTTCAAACCGTTCAACAAATGATTGACGCTGTCCACAACCAA
GATCGCAGCATCTGCGCCATGTTGTTTTGTTGTTATAGCAACAATAAGAA
AGATGCATACCCAATGGATAAATACAATTCGAATCATAGTATGCGATATG
CAGAATATCCTCATGAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000114_pilon | genome | sc0000114_pilon:717020..720942 + |
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