MSTRG.13965.4.p2 (mRNA) -

Overview
NameMSTRG.13965.4.p2
Unique NameMSTRG.13965.4.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:605828..612924+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13965.4.p2 ID=MSTRG.13965.4.p2|Name=MSTRG.13965.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7097bp|location=Sequence derived from alignment at sc0000114_pilon:605828..612924+ (Clytia hemisphaerica_ch_hm2_pilon)
GTTTGACTTCAGGTTTTGATCAATGAATGGAAGTATTGGATTGTTGGTGA
GAACATCCAAGAAGATGATGACGATCAAACCTCACCCACAAAACCTTTCG
CAAGGGTAAATTCCTTCATCTTGGTAGTTCTTCACTTggtttcatttttg
aagtcCTTGGCCTTAGAGTTTATTTACTTTAGACAACAACATTATTACAT
ATTCCTTCCTCATAATTAAGGTGCCAGGGTAAATTACTGCACCAGTACTT
AGTAACTTTTATTAAACTCTGAATATCCACAGTGCCTCATTCCTCAACAT
AAAAAGAACTGTTAATTGAGGTTACATCACATCACTATTTCTTTACTGAA
AGATGTCAGTGAAGCCAATTCAATCTTACAAAAACTTATCCATATCTGTC
TTGTCTTGGCGTGGTTAAAGTGAGGAGTCACATGTATACCATGACAGGCG
AAGCTTCTTTACATTTCCAATACAGTACTCGCGTCAAAAGCTGTAGAAAA
TGGACTGGTGTTCCAGTTTACTAGTTTTAAATTACATCTAAAGTCATTGC
AACAACCATAGATTTATGAAGTCCGAagagctagatgtcgtgcttttgct
gaaaagtgtgccgaggttggtaggaaatcctacctaagtcacgtgacatt
acaatataatttcagcgcttgaccaataaggagattcgcgggttttcgaa
aacaaaagcagcaacattaatattttttaattaatttcatattttttacg
atattcactcttttttgcttggaagaacttaaagtacgacatctaaccct
tcgggctttacagaaatctgtggcgACAGCACGCTTACAGATACAGATAT
CAATGTTTTTCGACCAAGGTAATGGAGCTCGAACCCAGTGTCCTAGTACC
AATATGGTCGGGTCAAGatgaacattttacaagaatttttggacctaccc
cggtggaggtcctataaattaacctttgtccgtctgtccgtccgtccgtt
agttaccagcttttctcatgattggctcattagttttttctgattttttg
cacaatgatgcaaaatggcaatgcccaaaatgtgacggagcccgattttc
gaaaaaaaatttttgggggcaaatttgggccaaaaaacggctaaaaaacg
ggttttttggactttgtgaaaaattggatcattaattttttctgattttt
tgcacgaaagtaaggtaccatcataggtataagatggctcaagcagattt
ttgcaaaaaaattttgttggctcaaaaaacgcatgtttatctataagaat
cactattaataagcatacatcaatgttcttagtcaaattactcaatttct
ttatgagatagatgttttttctgctcatgagggcttacttttgaagaata
tgtgtgtttagacaggaaatttgggttgcttggcgtgttttcatagaaaa
actggccaaattcgatattttcttataagcacattatcaattacttaggt
attggcttttctcgagattggctctttcattctttatgattttttacaca
aagatgcataactataaacccttgaatgtgacagaacccgattttcgaaa
aaaaatgtgtttgggcaaatttgggccaaaaaacggctaaaaacggtttt
tttggttaaattactcaatttttttatgagatagatgtttttttttctca
cgagggcttacttttgaagaatatgtgtgtttagacaggaaatttgggtt
gattggcgtgtttttatagaaaaactggccaaattctatattttttataa
gcacattatcaattgcttaggtattagattgattggctctttcatttttt
acgattttttgcacaaagatgcataactataaatcctcgaatgtgacgga
gcccgatttttggagaaaaaaaatttgggtaaatttcagctaaaaaaacg
gccataaaagggttttttggacttagtgaaatattggaccattgtttttt
tctgattttttgtatgaaagtagataaaagatggctcaagcagacttttg
tataaaatgaatttttcagctcaaaaaaagcatcttgataaataagaatc
actattaataaacatacgtcaatgttcttagccaaattactcaatttttt
ggagatgtttttttgctcacgaagtcttgaatatgaaagaacaagagcat
gaaattttggtttctaaacgttttttttttataagaaacaaacgactaat
tttaatagatcgtcactatttgtgttctgaatgattgtttaatggtcacg
tcacgtagatatcaattataaacgtgttaaatgcataatccaggtaggtc
catcaaagtatcacttgttgtcattggattggtagttaactattcaaaca
aaaacttttattatatttttctaaagaacgcatcatctctattgttttga
ataaccaattatgtgagcatcttatCAAAACTTCATCACAACTGGTATGG
TCAATAGTTGATTGATGTATTTACATgcactttatttatttttcaggcAT
TATACTTGGTTTTACAAGCAGCTTGTTTCTTGGTGATGGCCGTAATGTTG
ATgagattgaaattattttctacACCTGCTTTGTGTATATTGTCAAGCCT
TCTTGCATCAAGAGAGGTTCGTAgtgatttttttagatttttagttaaca
atgtataatttatttatgatccTGGACTTTGATTTTGTCGCAAGttgata
ttttcagtttttgaccTCCATAATCTTCTCCCCCAGTGTTGGGTTTTCAA
TTCAGCATTGGTATTTGCGTAAAATACTCCATTTTATagagttttgatat
ttctttgaTGTGACTTTCATCAAATTCGGTTAAACTCAAAGacgcttttt
ttatttcaaacaatTAAAAGAGCGTGAAAAGTCTATTTTGGTCAAAGATT
ACGTTCGTTGATTCCTTGAATAAATACCTATacatattttttcaatgaat
ttgaATACAGTCGCTTTCAAGTTGTCTTCtaaccagccaccagaaccgtt
ggaagaCCAACGGATCCgacgagactcgaactcacaaccatgccattcac
gggtatttgctctaccattgagctacgggtctAAATTCATgttgaacata
ttttttcagGTATACAGTTTCATTCCGAAACGCATTCAACAATATGCAGC
AGTGTTCATAATCCTTGGTGTGATGTCCGTTCAAGGCTATCCCAATTTGA
AAGAACAATTCGTAAGTCCCCTTTCCTTTGTTTTTCCTTATCTAATATTC
CAATAGTGGATTGGCCGCCGTTCACTCTAAAGGGAGCTGAGCCAATTTCC
CATCgaagaggaatgatagtcggcctttaaATTTGATGCATCCGCAGTCG
AGTTTAATGTCCCTTGCGCCTAAACCAAAAAATAATTCGGTTGGACCCAC
AAATCCCGAAAACACATACTGGGGTCCaggcctcccgctgcaaaatcctt
gacgtgGTCTGCCTAAACGCAACAATAAATCTAAACTAACTTTGTTGAAA
TTTTCCCTATCTTTATAGCTTTAATGTAtctgatgaaaatttctgcatat
GAATGCCAGatctcgttcgttcgttcgttcgttcgtgaATTTGAATAAGT
TCAAGTTAGAATTATTCTCCAACTTCGCTCCAAAtagttttggatatttt
taacgatggtttcgaataacttttgatttttgaaatttacttttctAGAA
TATGAAAGGAGAATATAATAATCCAGAACTTGAACAACTGGTAAGCATCT
TATTTTACTTTCTTAATACACTTGAGGCTCTTTATTGAGAACGAAGTGTT
AAGTGTTACTTACCATGGGTTTGGTGCCAAAtttaaaacttcatttttat
CTTTGTAGAACTCTGAGTTTCGTGTACTTTTCAATCGTCAGCTTGATACA
AAACGATCaaggattttataaaaaataaattctaaactttgtatttttgt
cCTaaaaaaaTCTAATGACATACTCTATTATTTCATTTCCCAGATCGAAT
GGTTACGAGAGCATAGCAATCCGAGTATGTACCGAACTTTatcttaaaaa
tcttaaaatcaaacAATTCTAATATTAGAATTgtttgattttaagatttt
taagatTCAAATGTTGGATCTACTAACTTGTTCGCGCTGTtcctcatttt
tcattttttgtaccTGCTGAACAAACAATACAGAAAGATGAAGtaattta
aaaatcaattattaCTAATCACTAAAATTAAACTCTAATAATAGACTTGC
AGTGATTTAGATACCAAACATTCGTTATTCTTTAGATGATGTGTTTGCTG
GTGCCATGCCAACGATGGCGGCCATCAAGTTGTCGGTCAAACGCCCAATT
GTCAACCATCCGCATTACGAAGATTCCGGTCTTAGGTAAGGTTCCAAATT
TCATCTCATACGGGTGAGGATATCAAAATATCGAACAAGGTAGATCCGAT
ATTTTACTTGGATAGCACATTAAgacttttgattgttttaatgCGGTTCA
CGGCCAGTCTGCTCGGGCTAAAAACTGAACTAGAGCAAAAGCATCTATGG
CAAACCATTAGACAATACAATACTAAACGCTGGCGAATCATTGATTGGTC
TGCAATGATATCACCAATGGGGATGTAGTTGAACTGAAAATCTTTGAGTA
TTTCAATAACAAAACTACCCTCGCTTTTAACAATGCATACTAGACTATGC
ATCAGTCCTTTTTGGATGATCTTTTTTCTGAGTTAGTTTGTTTGTCAATT
ATGCCTACCAATTTCCATCATTTCAAAAAGCCTTCGTTGTTAATCTTTAT
AGAGCACGGACGAAGCGAGTTTACCAGATGTACAGCCGTAAGCCATGTGA
GTTTGTtcacgatgaaatcaaagcgATGGGTGTCACTTATTACGTCTTTG
AAGATTCATGGTGCTTCAGAAGTTTCAGGTAAAATTTATGGTTACCTAGT
TAACTTGAGTGTTTTACTGTTCGGGAACTATATTCTCTTGTTTATTGCGT
GCCCTTGACTTATACAAacttatttcgaaattttttaccAATTCTTCCCA
GATTATATCAGGAATCATTGACCAGAAGTTCCCTTGTTTTTGCCTTAGCT
AAATAAGcgacttattttgaaaataacatttACTTAACTGATTTAGGTGT
TATACTTTTTTCAGGGATGGATGCGCACTCCCAGAGGTCTGGGACATAGA
AGACCCGAAGAACAAAGGACGTCCTTCTTGTTGCAGCCTGATTCGACAAA
ATCCTGGACGTTTCAAGATCATTTTCAGCAACAAAACTTATGTCGTTCTA
AAGGTTTAAGTTCGTGACAATGTGCTCTCGTTCTAAGTAATGTCATGTAG
GTTTATGTTTGAATTTCCTGTCAACTCTCTCACAGCTTTCATTAGTTAGG
GGTATTATTTTCTCATCAGTAATTTTGATCGTCTCTCAAATATTATATTC
TGACTCAtttcagaagcagccggcggagagattttttagaaatatgtatt
cttatcttctaggagaccaaatgttatgacctttcaacttttttatacaa
atgatgtgttctgatttctaggaaacctttatcgcactatttgtctccct
aaacttatcactactttatggtttgatgtgttgtaaaatctaggaaaaac
aggTTGTCAAGataaacttgtaagatatttgtttttctccacgaaaaatg
tgttctgaagctttctagggttacctagactaGACAACAAGAAGAACACA
ttagatgaccttgattatacccctgtctcgtcagaacacatctaTTTTTT
AACTGATTATTTTTCGaagatctgatcagaacagatcaaatttttagctg
aaatatgctctcagaacacatagGaaaaaaagatcgcctcgccggctgct
ttcgtcTTTTGTTACCTTTTGTACTAAACTGGTAAAGCATACAgttctct
ttaattcgatctttaagacttttcttcaaattacagagagagattcaaat
tttgaaaagtattttACACTTCTTTTGAGAGAGGTTCCAATATTTTGGTT
TGACCAAACCCTCAACCAACCAACCTTTAGTTCATTATGTTATGTTTAGT
TGAATGGTTTTTGTCCTTTATACAGTAATTGAATTCATATAGTAATTAGT
TCGTATAATAATTCGTATATGTGTTACTCTTCGGTTTTGGTGATAGTATT
TAATTTTAGGGGTAATACTGGTAATTTTTCGTTTATTGATTTTGTTAAAA
CtaatgataatgataatttaTAACACAATAGGTAATGTTTCGTTTAGTTC
TAATTATGAGAAGCGatatatttttcagaattttccatCAATATCTTAAC
TAgagttttttaataattttaggTAGTTTTGAACCtgaaattttcatcga
ttttgcATAGTTAAAAGGTATATCAATCAGATTTATTCGAAACCGATTTG
CTGTAAATCCAAGTTGcgaaaatgggctcttccagaaaaaaattgaatat
ggaggAGGgcggtggaggatataacagtTTTTGGAAATTACCTCCTGAAC
AATGCgacttttgatcccccggacaacagatctgaccccccggacattca
TAATTACCCCCacacaaggcaaattttgtagatttttcaatactcccccc
cccccccgaacaatttatttaaaatattttccaccCTTATGTACgaaaat
attttctggaagagcccaatggtaATAAGTTACAAATTCAAATTAATTCT
CAGCAATTTGATACAGTAAGAAATTCGGAAAATTTTATCGGTAATTTTTA
TATCACTTTTAGGGAAATGTATTAATGTCTTGATGTATTAGAATTCTACA
GGTCAGAAAAGTAACACCTTCCTTTTTATAAGTTCTATTCGGGACTTTTG
ATACATCTAATGGAACATAAtggtgttttgttttttcttagcTAGTATAT
AATGGTaatatttatttgaaaatgttttaacgTTTAGGTAGAACatttta
ttaacgttttttgctctttaatgataatttttaaaaggaaatatttt

Coding sequence (CDS) from alignment at sc0000114_pilon:605828..612924+

>MSTRG.13965.4.p2 ID=MSTRG.13965.4.p2|Name=MSTRG.13965.4.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1053bp|location=Sequence derived from alignment at sc0000114_pilon:605828..612924+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCAACGATGGCGGCCATCAAGTTGTCGGTCAAACGCCCAATTGTCAA
CCATCCGCATTACGAAGATTCCGGTCTTAGAGCACGGACGAAGCGAGTTT
ACCAGATGTACAGCCGTAAGCCATGTGAGTTTGTtcacgatgaaatcaaa
gcgATGGGTGTCACTTATTACGTCTTTGAAGATTCATGGTGCTTCAGAAG
TTTCAGGGATGGATGCGCACTCCCAGAGGTCTGGGACATAGAAGACCCGA
AGAACAAAGGACGTCCTTCTTGTTGCAGCCTGATTCGACAAAATCCTGGA
CGTTTCAAGATCATTTTCAGCAACAAAACTTATGTCGTTCTAAAGGTTTA
AATGCCAACGATGGCGGCCATCAAGTTGTCGGTCAAACGCCCAATTGTCA
ACCATCCGCATTACGAAGATTCCGGTCTTAGAGCACGGACGAAGCGAGTT
TACCAGATGTACAGCCGTAAGCCATGTGAGTTTGTtcacgatgaaatcaa
agcgATGGGTGTCACTTATTACGTCTTTGAAGATTCATGGTGCTTCAGAA
GTTTCAGGGATGGATGCGCACTCCCAGAGGTCTGGGACATAGAAGACCCG
AAGAACAAAGGACGTCCTTCTTGTTGCAGCCTGATTCGACAAAATCCTGG
ACGTTTCAAGATCATTTTCAGCAACAAAACTTATGTCGTTCTAAAGGTTT
AAATGCCAACGATGGCGGCCATCAAGTTGTCGGTCAAACGCCCAATTGTC
AACCATCCGCATTACGAAGATTCCGGTCTTAGAGCACGGACGAAGCGAGT
TTACCAGATGTACAGCCGTAAGCCATGTGAGTTTGTtcacgatgaaatca
aagcgATGGGTGTCACTTATTACGTCTTTGAAGATTCATGGTGCTTCAGA
AGTTTCAGGGATGGATGCGCACTCCCAGAGGTCTGGGACATAGAAGACCC
GAAGAACAAAGGACGTCCTTCTTGTTGCAGCCTGATTCGACAAAATCCTG
GACGTTTCAAGATCATTTTCAGCAACAAAACTTATGTCGTTCTAAAGGTT
TAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13965MSTRG.13965Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13965.4.p2.exon1MSTRG.13965.4.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.4.p2.exon2MSTRG.13965.4.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.4.p2.exon3MSTRG.13965.4.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.4.p2.exon4MSTRG.13965.4.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.4.p2.exon5MSTRG.13965.4.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.4.p2.exon6MSTRG.13965.4.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.4.p2.exon7MSTRG.13965.4.p2.exon7Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13965.4.p2MSTRG.13965.4.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:605828..612924 +