MSTRG.13965.3.p1 (mRNA) -

Overview
NameMSTRG.13965.3.p1
Unique NameMSTRG.13965.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:543988..551694+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13965.3.p1 ID=MSTRG.13965.3.p1|Name=MSTRG.13965.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7707bp|location=Sequence derived from alignment at sc0000114_pilon:543988..551694+ (Clytia hemisphaerica_ch_hm2_pilon)
cccgtcggcaaacaattttcaaaatgttgcaaaacattcggcattttacc
aatttgccgtctagcccgtgtccacagtgttatataccgctggaaagcta
agatcacgggctttcatttagtaaaaaccagaacgctttagcatacatag
aaataaagttccaagggttcaaagttcacggaaaaatgaaacatttggtt
tgacgtcaacgaaagttgcatgacttctggagtcgctacttggttgcatc
gtgtaaagaactaaaggtatctctttattttgcttcaattcttctttttt
gtttgccaattttgtattgctgttttgggttggattttgaagaaaaaaat
ttctccaaaaatcactttgcactttctttctgtctaacagactttccacc
acactgtctatattttatggtaaaggctgccattctaaattgatttatca
ctgctggggtaccatcttgaaattatgcatgtcattatgtgcatatattt
atttgcagccatgggattcatgcagggaaatctgtcaacaggggttcacc
tgatttctaggtgaaccaagctctataattttagaactttgtctggctga
ggtaaaacttattttttctaaaattttgagcttggatatccaggctaggg
tcaacccatgccatgtgaggggaatagacctttttttaaagaggcagcca
tgttgaataattatgtactccagcataaaaacaatgatacagccatgcat
aatttttaaaatatgcatgatacagtaattatgcatggctgtatcattgt
ttttatgctggagtacatatataattattcaacatggctgcctctttaaa
aaaaggtctactgGGTAGttagttcaaggtgctgacgggacgctcattag
taagcgtctatagttgcgagaataggcctctaaagcctcctgcaactcaa
ccaaatagaaaatagaaatagaaatcaaattttAGAATCTAGTGACTATA
GTGCAGGTAGAGCAACCGGCTACCGTGCGCAAAGTTTTGGGTTCAACCCA
GCTGGGTCATagcaaagatttccaaaatggtacttaatgcctttctgctt
gatgctcagcaactaagagaaggatcaagggtttTAAGCAGTCCTTCACA
GATTgccatagcctggatatccagaccgtaaactatttcaccgtctggTT
TTTTAAGATCatgtttctggtttacggtctggtccaactaactcgtctgc
agggatatttgtCCCTGCATATGGGAGTGCATCTGATTGGCCAATACGTG
GCCCAGTCACTGATCAGAATTTCCGTGGGATTTTGTATGTTTTTCTATGC
Gtgtgcataatttatggaaaaagctgacctcgcaaaaaaagataaacaaa
tgaaaatgaaaacgcaggttcatttctaaacgaaatggccgctggaaatg
AGCCTTCATAAATGTGgatgatgttttgatgtagtttaaagtagttttga
aagtttgtaaaagagCTTTTatagtaagttaattatgtgtgtctgcctgg
gttatCTGCCTGatattctgtcaacaagggtttactcacaggcactatca
aacaaactgtacccaacttttttagttgcaccaaaCTCTAAGATTTTATT
GTATGatgaggtaagagtttttttctaaaattttgagtctaGATACCCAG
GCAAAGTGTGCCATAGAGTGCCACTCAACGtccttacaaaagttgtcttt
ttttatttcccaagcattcgtctcaagcgttcacttccacaataatttat
gtagtTGCTATTTCTGTCAGTCCACAGTCAGGTTCAAcatataccttatt
ggtatatattttcgcgtgttacaaattttcgcgaatcgcgaaattttttc
gaaaaaacgtgtttcgcgtgtattaaatttcgcgattgccgacttctgga
aaattttcgcgtgtattaaatttcgcgattcactaaactaggtattttca
gaaagtgggaatataaagcaagaaaaagactgatttttcttgaaacacaa
cgtttttgatgtaaaaatgctaacaaaatactaagaaaaatttttcgcgt
gtatttaatttcgcgattttgtaattttgaaaaatttaaacagtatcaaa
tttcgcgaaaattggccaaaaaactcgcgaaattaagtacccgcgaaaat
ttgtaacacgcgaaaatatataccaataaggtataaGCATGTTTTTATTC
ACGTggccgaagtgcctactaaaacaatccgggggtaagtggcgaagcaa
catagcagattattcgtaaagtaaagaaatatctttttgcattgacaatc
aaatataacaTATTACATTAtcatttccttaattcaaaaatcaaaaattc
attttgcaatcgcgaaaaaataaaaagatgaattaatattatatatatac
ATAATAAAACGCCCCCATCTTTTACTCTCATCTAATTTCCGATCTCGAGA
CGTGCAAAACGCCTGTCCGCCTGAaaactatgaatttataataattataa
aagacaaaaagtttgatacttcattagtgaaataatcaataaattcctag
tttcaattttcagtggcaCTGTTCGTACAggttcgtagactagtcggaat
gtACCTTCTTTTACTCGTGGGATttatggtaacttttcatctttgttatt
ttcaaaataaagcacAACCGAcaaaaaatgaagcttcaaAAAGTTACTTA
TTTCCAGTCAGTAAAcaattctgacaattaacaaaattgatatgCTGATG
ATTTTTtaggtcaggcaaatgtcttgTATcaggggttctagtcttgaccc
ctaagcctacgcgagattgaaggGTTTGGTTAAACAagacaaaacttgaa
aaaagctggtgttttgaagtgCTTCCGTATGATCGAAATATCGCTCGAAA
TCGAAATTGTGACGCACTGTTAAGTggagggagaaagagtggcaccctcc
cctaccttcggctagatactgtgagatcgggtaacttgcatcagtggagg
ctaacatgcatagacctcaaatattaaaatacaaagttttgaaaaaagaa
tttacctATGAAATTTTAGCCAATACGTTAAGGATTTCCTTAACGTATTT
CTAAGATAATTTCTAAGAGTTGGGTTCATTATCAACATGATTAGCTAGCA
TAGCTAGCATGATTTTTATCTGGTGTGATTGAAATCTGAATTgctaaaaa
aatgagaaaaattgaccaaataaAATTgcaaacttttcttctttttatta
ttattaagaAGCCAATGACTTTATTGTCTAAATAAGAAAGTTATATTTCT
TTTGGATacacaattgaaaaataatattatatataAGTAACACAGCCAAA
ATGCATTTTGATACATTCACCATTCATTTCATGTACAGTATTCAAACGTG
AGGTGAATTGCTTCAAAGCCTTATGAATTTATTTCacattactttttgct
taatttttcttccaaaaagtGTTGAACTAGGTTCGACCTATGAGACAGGG
CACTGTCTTGGATGAAAAGACTtttttgataggtcgattttcaaaaattt
cgagCACTTTCTTACTGTATTTATTGAATTAaggataacttttgatctaa
tgaatcgaatttaataaatgacccattaAAATTTAAGttctatctttctt
cttcccaatgaaataggaatagttcttttaagatttttagatttctagaa
aattagttttaaagagaaaacttttttgtgacACACCCGGTATTTTGTTG
TGACCATAAATTTTATCATATACGTgtcattattaaatatttcatccAGT
TTCATCAGTTCATGTTCCAGCATTGTACATTTCATCATCATACGTTTAAC
ATTAAACATTTTAACATCATTTGTTATCTCATTATGCACTTTAACATTTT
ACCTTCAACAATACCCTTGTCTTTGTGACCCATTGCGATCCACTCCATTG
GCCACTAGATTgaaaaatccttccaaagattgCCCATTTTTTACACCACC
ACAAGATGAATAAGCACACTTAACCTTCCTCCTGACCTTACCCCTGATTT
TGTTCCTTAATTCTTTGGTTGTTTTTAGTATTCATAATGTCTGATCATGC
TAATGTTGTAAAAAATCTGCACAAAAGTTTGAGAAATGAATTCAAACATG
GAATATCTGAAGATGAAATTTGGGATAAACACATCCAGAATAAAGAATCC
CTCCAAAATTATGCAGAATCGATGTGTTCGTTGGCAAAGAATTCATGGAG
AATGGATAATAATAATAGAATCAAATGGTGTTTAGCAACGATTTCATATT
ATTATGAAGGTGGTCTACTCAAAGTCTTGagaaaagaattaaaaacaaag
aagtttGAAGATTTACGAAGTAATAATATTGAAGAGTCTCCTGAGGAGCA
CCAAaggattaattttgagattgaaaatacagtttttgaaattgaagaca
CAAAGAAATTACTACTAGATGTTGGGAGTTGTTATAATCCTTTCGGAGAA
ACTGTAGAATACACCAGTATTGCAATCGATATTGCACCTGCCAATGAGGA
TGTCATATTTTGTGAtttcttgaatttgaatttttctgctGTGAATGAAG
CATACACTCAGATAGATGAcattaaaacaaatttaaagtCTGGAAGTCTG
TTGACAAATACTttcaatgttgttgttttttctttgttactGTCATATTT
CCCATCTCCCAAACAGAGGCTCAAGTGTTGCGTGAATGCCTCCTATGCAT
TGAAAATTAATGGACTCATATTAATTATAACACCTGATTCCTCACATCAA
AACAGGCACCAAGGTATGATGAAGTCCTGGAAAAATGCATTAGAGGAAAT
CGGTTTTGTGCGCTTCAAATACGAAAAACTTGAACATTTACATTGTATGG
CATACAGGAAAGTGAAAGAGTCGGCTATTACTGAATCTTTGATGGATGCT
TTATCAGGATCGTTCTACATACCACAAGATTTTCAAGAAGTTGATAATGA
GAGTCAGTTGCAGAATTAAAGCTAAAGACAATGGTTTTTTCTAGTCTAGA
Ctttatatgaatattatatgtcaattttaattttgtatgaaattattatt
aaacaaattattgtgatgattttttaaattttattaaataaaaagcACCT
TATGAATCAAAGACCTTACTTAATCTTGTCTAAGGTTTTTACTCTGTTTA
TGATGTGTGGCGTTTGATTTTATAATATTGTCTTTTTTCTCtacttttag
aaaataaaatctcAATAATGGGGAAGGGAAGAAATGCAAAAAGTCTTCCA
AAATCAAGAAGTCATGACAAGAAAAATGACAAGAGCTCAAGCATCGATAT
TTCATCCCTTGGAATTGATAAATACAAGATATTTGTCCTTATTTTAGGTA
AACTTGTCTATCAAAAACTTTATCGGGGGAAATAACCAAGTGACAACAGT
CCTTAGAATTCAAGTTGAAAACCTGAAATGCATTCGGACTATAGAGCTAg
cctaaaatgttaaaaagaagCTGCAGTTTCTGCCGACCATGACCAATTTT
TAAGATGCGAGAACTGCAcaaataaatttgaataaaactcTTTATTTGAA
CTCAGAATTCTCTTTTCAAAGGATTAAAATATGGTGTTCTTTGAGAACCG
TAGAAATATTGTTACATTCattctattttcaagatttcagaAGAAGCGTC
GTCATGCTTTTCAAAATTCGACCTTCACTACAAGAGGTCATCATCAGAGT
GTaaaaacctatcaacaacaaaaaagattttaaaaacaaattcataatta
gataataaatttacaataaaaaaaaacaatgttaaaaacaatagaaaaga
tATAGCTTGGTCGAGCATTATATCATTGACCATTTTGTCATTCCATTTCA
GCTGCAATCATTGGCTATCTACATAGTCAACATGTTTATGGGATGTTTGA
ACAACAAAGATTCTTCTCACATCTCTCAACACTTGAAAGAGAACTCTCTT
TCAGAACTGAAATGGTAGGAATCTCCGGACAGTGTTTCAACTTTTGTGTC
CCTGCAAGCAATAAGATCAGCCGATCCTTAAAAAGGCAAATTTTTGGCTG
ATATGGACCAGTCCTGGCCGATTTTGGCCGATCCATGCTGAACCATGTTC
TTAAATCTTTTCTCTAAACAAAGGCCGATCTAGACCACTCCGAATCGACA
CATTTGTTCATTTTCATGGTAATATTTCTCAATTTTGGTACTGTGAACTA
GAacgtttttctgaaaatcagatTGATATTTCCACTGAGGTTACCTTAAA
ATCAAGATttatgtatatatttttgatgaTCATGAAAAGGTAATGTAAAC
AATTCTACTCTTAATTAGTACTCTAATTTTAATAAGATACTAAGATTTTT
CTTATTAAAATTCTTAATGAAGACTACCTTTTTCCCACCCCAAACAATTT
GATCAGAACTAACTAACATGTAAAAATCTGTTTAATAAACCAACGTAGTA
AGGTCATTGAAGAAACACTGAGCACTTCTtcataagtttttttctttttc
agggaCTTTATTATTCTTACTACAAAACAATGGCTGAAGCACCCTCTCTA
TATGATGGATTACATGATCTTGTTAGATGTAATATCACGGAATACCCAGA
TAAAGTTAATGTTCTGCGTAGATTCAACCTTTATCCTGAGGTAAATTATC
TGCCTTTGATACGATCATTATTACCAGGCCATAAAACATTGATTAGGTCC
ATGtttaatgtttttcattgaTTGTCAGCAAGTTTTATTGACTGTTAAAT
ACAAATTATTGTCGAAAAATATTTAACataacattgagtttcaataattc
ccttttttaaagtcaatgtTTTGTATTGActgtcaattattttgttgTCA
GCGCTGTCAATATAAGTAATGAACAgtcaatgcaaaaaattgactgtTAA
CACACAATTTACAGTGTTATTGTTGACGTATCACTACTAgatcaaaaaac
attgattaggccCCTGCTCAATGATTTTCATTGACTGTCAGCAAGTTTTT
CATTGAGTGTCAGCAAGtttttttGACCTGTTGAAtacaaattattgaca
aaaaatattttgcattgactgtcaatcaattttcttgaaaactaaaagaa
tatattgaccGTACATGTTCTCTGACAATTTCGTTATTTTTTGCCACAAT
TATACGTTTCCTTGAGGGTCTCAGCGTTCAGaaaaaaaGAACTTAACTTT
tgtcccactgaaaaaaaaaagcccaaagcaCTAACACACTAAGAATTTCT
TGGAAATCGATTATTGGATTATTTGATACATTGAAATTCAAATCATGGTA
AAAGGTGATCAACTTTTCTTAAGTTTTTGATTATTGTGTTTATTTTTTGT
GTCAAATAATAAGGTTACATGAGCATGGTTAGGTTCTGTGCTCTACATTT
TTAAACTAATTTGATGAAATTATTCGTTTTTAGGTTTTCCTTGGTATGGC
ATACAGAGCTTACAACTATGTGAGCAGTGTTATGAATTGggaaacaaaga
aatgttataGTATCAATCGAGGACAAGGGCTATCACCTGTTGAAAGCTGT
GTTGGTAAGTACTGcgtttagaaaataaaataatctctgcaaaaaaattc
caatatG

Coding sequence (CDS) from alignment at sc0000114_pilon:543988..551694+

>MSTRG.13965.3.p1 ID=MSTRG.13965.3.p1|Name=MSTRG.13965.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2076bp|location=Sequence derived from alignment at sc0000114_pilon:543988..551694+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGGAAGGGAAGAAATGCAAAAAGTCTTCCAAAATCAAGAAGTCATGA
CAAGAAAAATGACAAGAGCTCAAGCATCGATATTTCATCCCTTGGAATTG
ATAAATACAAGATATTTGTCCTTATTTTAGCTGCAATCATTGGCTATCTA
CATAGTCAACATGTTTATGGGATGTTTGAACAACAAAGATTCTTCTCACA
TCTCTCAACACTTGAAAGAGAACTCTCTTTCAGAACTGAAATGggaCTTT
ATTATTCTTACTACAAAACAATGGCTGAAGCACCCTCTCTATATGATGGA
TTACATGATCTTGTTAGATGTAATATCACGGAATACCCAGATAAAGTTAA
TGTTCTGCGTAGATTCAACCTTTATCCTGAGGTTTTCCTTGGTATGGCAT
ACAGAGCTTACAACTATGTGAGCAGTGTTATGAATTGggaaacaaagaaa
tgttataGTATCAATCGAGGACAAGGGCTATCACCTGTTGAAAGCTGTGT
TGGTAAGTACTGcgtttagATGGGGAAGGGAAGAAATGCAAAAAGTCTTC
CAAAATCAAGAAGTCATGACAAGAAAAATGACAAGAGCTCAAGCATCGAT
ATTTCATCCCTTGGAATTGATAAATACAAGATATTTGTCCTTATTTTAGC
TGCAATCATTGGCTATCTACATAGTCAACATGTTTATGGGATGTTTGAAC
AACAAAGATTCTTCTCACATCTCTCAACACTTGAAAGAGAACTCTCTTTC
AGAACTGAAATGggaCTTTATTATTCTTACTACAAAACAATGGCTGAAGC
ACCCTCTCTATATGATGGATTACATGATCTTGTTAGATGTAATATCACGG
AATACCCAGATAAAGTTAATGTTCTGCGTAGATTCAACCTTTATCCTGAG
GTTTTCCTTGGTATGGCATACAGAGCTTACAACTATGTGAGCAGTGTTAT
GAATTGggaaacaaagaaatgttataGTATCAATCGAGGACAAGGGCTAT
CACCTGTTGAAAGCTGTGTTGGTAAGTACTGcgtttagATGGGGAAGGGA
AGAAATGCAAAAAGTCTTCCAAAATCAAGAAGTCATGACAAGAAAAATGA
CAAGAGCTCAAGCATCGATATTTCATCCCTTGGAATTGATAAATACAAGA
TATTTGTCCTTATTTTAGCTGCAATCATTGGCTATCTACATAGTCAACAT
GTTTATGGGATGTTTGAACAACAAAGATTCTTCTCACATCTCTCAACACT
TGAAAGAGAACTCTCTTTCAGAACTGAAATGggaCTTTATTATTCTTACT
ACAAAACAATGGCTGAAGCACCCTCTCTATATGATGGATTACATGATCTT
GTTAGATGTAATATCACGGAATACCCAGATAAAGTTAATGTTCTGCGTAG
ATTCAACCTTTATCCTGAGGTTTTCCTTGGTATGGCATACAGAGCTTACA
ACTATGTGAGCAGTGTTATGAATTGggaaacaaagaaatgttataGTATC
AATCGAGGACAAGGGCTATCACCTGTTGAAAGCTGTGTTGGTAAGTACTG
cgtttagATGGGGAAGGGAAGAAATGCAAAAAGTCTTCCAAAATCAAGAA
GTCATGACAAGAAAAATGACAAGAGCTCAAGCATCGATATTTCATCCCTT
GGAATTGATAAATACAAGATATTTGTCCTTATTTTAGCTGCAATCATTGG
CTATCTACATAGTCAACATGTTTATGGGATGTTTGAACAACAAAGATTCT
TCTCACATCTCTCAACACTTGAAAGAGAACTCTCTTTCAGAACTGAAATG
ggaCTTTATTATTCTTACTACAAAACAATGGCTGAAGCACCCTCTCTATA
TGATGGATTACATGATCTTGTTAGATGTAATATCACGGAATACCCAGATA
AAGTTAATGTTCTGCGTAGATTCAACCTTTATCCTGAGGTTTTCCTTGGT
ATGGCATACAGAGCTTACAACTATGTGAGCAGTGTTATGAATTGggaaac
aaagaaatgttataGTATCAATCGAGGACAAGGGCTATCACCTGTTGAAA
GCTGTGTTGGTAAGTACTGcgtttag
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13965MSTRG.13965Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13965.3.p1MSTRG.13965.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13965.3.p1.exon1MSTRG.13965.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.3.p1.exon2MSTRG.13965.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.3.p1.exon3MSTRG.13965.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.3.p1.exon4MSTRG.13965.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13965.3.p1.exon5MSTRG.13965.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:543988..551694 +