MSTRG.13953.1.p1 (mRNA) -

Overview
NameMSTRG.13953.1.p1
Unique NameMSTRG.13953.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:361898..365652+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13953.1.p1 ID=MSTRG.13953.1.p1|Name=MSTRG.13953.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3755bp|location=Sequence derived from alignment at sc0000114_pilon:361898..365652+ (Clytia hemisphaerica_ch_hm2_pilon)
CATAAACAGTGCAAACTGAAACAACTGCGATGTTCAGGAATCATTGTAAC
GATTTGGTACAAATATGGGGTTGGTATAGATTGCATTTGGATAGGGTTTC
GTTCCGTTTATGAGACCATTACAGATATGCCAGAACTTCTGAAACAATTC
TATATTTACTGTATGATCTTTACAATACATCGTGGTGCTGAAGCTGGCAA
GAATAAAGTCTTTCTGTTAGTGCTTGATGGATTGGTATACAATTTTCGTG
ATTTCACTTCAAATCTGACGAATTTCAAATACATAGCGGAAAATGGTGTC
AGTGCAGAACGCATGGTGCCTCCTTTTCCTAGTGACACGTGGCCTACCAT
GACCACTCTCAACACTGGACTGTACACAGAGTCACACGGCATCTTAAAAA
ACCGAATGTTCGATGAAAAACgaaatttgacatttgattATAATCAGGAC
AATTTTCTTAGTTATTATGGTAGATTTTACAGTAAAGAACCTTTTTGGTT
GACCAACCAAAAGCAAGGAGGTTAGTGTAGTACATTGATATCACATCCAT
ATCAGCACACCAACAAATATTTTACCAattaaaatgaaacatttgataGT
CatagtttactagcaaataaacaaacaacaaaaacttttactggATATAT
TTCAATTAAACTGAtggtgtctcttattttgcagGAAACAGTTCAGTATA
CCGATGGCCTGGTCATTTAGCTTTTGATGAAAAGCCAAAGTACCACGAAA
ACGAAAGCCACATCAATGCGCAGCACTTCACGGACGCGCGAAAAGCTATC
GATGAGACGTTTGCAAATTTGGAGAAAGATTCTTCATTGAACTTCATGGT
GGTGTATGTGGATCAACCAGATCCCATTGGACATAAATATGGGGTGAACT
CCACAGAGGTACGTCATAAAAATCATTTACTACGTCTACATGTTCAGTTC
TTATATACTCCTTGCGCTTTGATTAAGTTTCTTTgataacaaatgttttt
tttcattttgaaaaattcctatTACACAGAGCATTAAAACACCGCCTTTC
TCATAGAGCCAGGAATACCCCTCCCTCCTGGAAATATTGACCATAATCGT
CCCTAAGTGGAAAATTGTACTCTAATTTCTGTCCCCACTGAATAATCAAA
TAaccaaatcctcactgcaaaaatttgcattatctttttttccatctcca
ctgaattttctgatttgaaaacaatggaattgaaatccccagccatataC
ATATGGGATAATCAATTCCGCCCATCGAGCTTCAGTAAAAACTGGTGTTA
GTCAAAAGTTTTGATAACTGGCTTGCTGAGAGGTAGATAGTGCGAGCCAT
AAACGTTATGACTGGGTTTGACATTGTTGTCTTAGTATCGCAACACAATT
CAACGATTGGATTCAGAAGTTGTTGGGTACATCAAGGAGAAATTGAAACC
TCACCCTAATGTCGATTTCATTGTTGTGGCTGACCACGGAATGGCTGATC
TGACAGACAATGTGACCACAGTCTTGTACATGGATGATTGGTTGAAGAAG
GATGCATACATTTTGAAAGGTTTTGAAATGGTCTCACCAACTCAAAATTT
CACAGTGGACGACTTGTGGAGGAACTTGACCAAACTGAATGATACAGGGA
TGGCAGAAATCTACAGGTAGAATACACGACTATTCACGTAGcactttctt
tttaaataactaACTGTCAAGCCCAAAGGTCTGGCTATTACTCTTCCAGT
AAGACTTAAAAGCCTGGAGTGGTTTATTTTGTAGACACCAAAgccttcat
tttcttcttcatggaTTGACCCATTTCAACCGTGATTCTCAAATGTTTAA
ACTGTAATTATTCCACAGGAAAATATTAGCGACATCAGATTAAAAATTGC
GGGAGTAACACAGCTAAACTTTAATCTGAAAGCTTTATTATAACCTCTCG
actaaattttatcaaaactcaAAACACTGAATTTCATGTACAATTTCTCT
CCCAGACAAAACGATTCAACATACGATTTTCCATCTCGTTTACATTACAA
ACATGACCCAAGGATTTCACCCATCCTGGTCTTGCCAAAACCGAACTGGA
GGATCGCCAAAGGGAGGAGCAAGAACCTCACTTTCACTATCGGTCAGCAT
GGTTATGACGTCAAATTTAAAGAAATGAGTACCATATTCTTTGCTATGGG
CCCTTCCTTCAAGAAAAACATCACCATGGACCCTTTTGAGTCGGTTAATC
TCGTCCCCTTGATGGCAAATATACTCGGGGTTGAGGCTCAACCGAACAAT
GGAACAGTAAATACATTTAAGAATGTTTTAACTCCACGTGTCAAGCATCA
AACGAGAAATGATGAAAGATTGAAAGCTAAGGATAGGACTAAACCTATTG
TAGGGCCTGATGGCCTAACAGAGTTCACTCGCTTTATCTATTACTAGCAG
GATAAGTGCTCATAAGTAAATAGTGAAGTATCTTTTCTCTCAATATGTCA
CTGCTTAGCACAGGCCATATGACGGTTCAAGGATAACGAAATAGTTGATA
AACTTTAAATGAAGGTGTGGTCATACGTTTATGAAACTTGGATGACTTTT
GGAAGGTTTGATCAGGTACTGAATTTAATTGTGTTGAGAGGGGAATAGAA
TGATTGGTTctcgaaaatacaaaagaaatgcTTCATTAATACTTTCCATC
ATCGAATAACGAACTACTTCTATAAAATATTATATTACATCTAttttttt
GTAGtcttttttaaaattgtttgttATAAATGTgcgaaataaaataataa
aacaaactttttcattaTGTCAGTAGAAGAGATATTCCTACACGAAATGA
AACGTAATAGCAACATAGTTCTGTTTTTCAGCTGGAAGAGATGTAGGAAC
TAATCCCTTGCAATTAATGACCAACTAAATTGTTTTACCGTCGTAGAGCA
TAGTTATGTGCGTTcataaaagaacaaatataaataataaaCTCAGTCAG
TCAGGGGAATCTTTCAACTGTGGAGATTGTGTTGGTTAAGCTTCTTGTTT
ATACCGCAATTACaggatttccctgactgattGCTataaaaggtaaataa
aatatACACTAAACTGAACTCTGAATATAACTTGATCAGAAAAAGTTATC
AAGTCAGGAGGTACAAATATGGGACACGAGATTTTATAGTTAATACCACC
AACCTATAAgggggggACCCACACGTCTTCTAATTTGGATTTCAAAAGCC
TAAAAAATGTGAATTCAACCACCTTCACAATTTGGctctttaaattttct
taaagtaAATGATACGCTTATCCTGGATATATGAAACATGAAACCTCCTA
AGTTGTCTCACTTATCTCTGCCCACTgtttagcctgggtatccaagctca
aaattttagaaaaaataagttttacctcagccagagaAAGTTCtgaaatt
atagagcttggttcacctagaaatcaggtgtacccctgttgacagatttt
cctgcatgaatcccatggctgcaaataaatatatgcacataatgacatgc
ataatttcaagatggtaccccagcagtgataaatcaatttagaatggcag
ccttgattataaaatatagacagtgtggtggaaagtctgtctGCAAAGTg
atttttggagaatttttttttcaaaatccaaccccaaacagcaatacaaa
attggcaaacaaaaatgaagaattgaagcaaaataaagatatacctttag
ttctt

Coding sequence (CDS) from alignment at sc0000114_pilon:361898..365652+

>MSTRG.13953.1.p1 ID=MSTRG.13953.1.p1|Name=MSTRG.13953.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5868bp|location=Sequence derived from alignment at sc0000114_pilon:361898..365652+ (Clytia hemisphaerica_ch_hm2_pilon)
CATAAACAGTGCAAACTGAAACAACTGCGATGTTCAGGAATCATTGTAAC
GATTTGGTACAAATATGGGGTTGGTATAGATTGCATTTGGATAGGGTTTC
GTTCCGTTTATGAGACCATTACAGATATGCCAGAACTTCTGAAACAATTC
TATATTTACTGTATGATCTTTACAATACATCGTGGTGCTGAAGCTGGCAA
GAATAAAGTCTTTCTGTTAGTGCTTGATGGATTGGTATACAATTTTCGTG
ATTTCACTTCAAATCTGACGAATTTCAAATACATAGCGGAAAATGGTGTC
AGTGCAGAACGCATGGTGCCTCCTTTTCCTAGTGACACGTGGCCTACCAT
GACCACTCTCAACACTGGACTGTACACAGAGTCACACGGCATCTTAAAAA
ACCGAATGTTCGATGAAAAACgaaatttgacatttgattATAATCAGGAC
AATTTTCTTAGTTATTATGGTAGATTTTACAGTAAAGAACCTTTTTGGTT
GACCAACCAAAAGCAAGGAGGAAACAGTTCAGTATACCGATGGCCTGGTC
ATTTAGCTTTTGATGAAAAGCCAAAGTACCACGAAAACGAAAGCCACATC
AATGCGCAGCACTTCACGGACGCGCGAAAAGCTATCGATGAGACGTTTGC
AAATTTGGAGAAAGATTCTTCATTGAACTTCATGGTGGTGTATGTGGATC
AACCAGATCCCATTGGACATAAATATGGGGTGAACTCCACAGAGTATCGC
AACACAATTCAACGATTGGATTCAGAAGTTGTTGGGTACATCAAGGAGAA
ATTGAAACCTCACCCTAATGTCGATTTCATTGTTGTGGCTGACCACGGAA
TGGCTGATCTGACAGACAATGTGACCACAGTCTTGTACATGGATGATTGG
TTGAAGAAGGATGCATACATTTTGAAAGGTTTTGAAATGGTCTCACCAAC
TCAAAATTTCACAGTGGACGACTTGTGGAGGAACTTGACCAAACTGAATG
ATACAGGGATGGCAGAAATCTACAGACAAAACGATTCAACATACGATTTT
CCATCTCGTTTACATTACAAACATGACCCAAGGATTTCACCCATCCTGGT
CTTGCCAAAACCGAACTGGAGGATCGCCAAAGGGAGGAGCAAGAACCTCA
CTTTCACTATCGGTCAGCATGGTTATGACGTCAAATTTAAAGAAATGAGT
ACCATATTCTTTGCTATGGGCCCTTCCTTCAAGAAAAACATCACCATGGA
CCCTTTTGAGTCGGTTAATCTCGTCCCCTTGATGGCAAATATACTCGGGG
TTGAGGCTCAACCGAACAATGGAACAGTAAATACATTTAAGAATGTTTTA
ACTCCACGTGTCAAGCATCAAACGAGAAATGATGAAAGATTGAAAGCTAA
GGATAGGACTAAACCTATTGTAGGGCCTGATGGCCTAACAGAGTTCACTC
GCTTTATCTATTACTAGCATAAACAGTGCAAACTGAAACAACTGCGATGT
TCAGGAATCATTGTAACGATTTGGTACAAATATGGGGTTGGTATAGATTG
CATTTGGATAGGGTTTCGTTCCGTTTATGAGACCATTACAGATATGCCAG
AACTTCTGAAACAATTCTATATTTACTGTATGATCTTTACAATACATCGT
GGTGCTGAAGCTGGCAAGAATAAAGTCTTTCTGTTAGTGCTTGATGGATT
GGTATACAATTTTCGTGATTTCACTTCAAATCTGACGAATTTCAAATACA
TAGCGGAAAATGGTGTCAGTGCAGAACGCATGGTGCCTCCTTTTCCTAGT
GACACGTGGCCTACCATGACCACTCTCAACACTGGACTGTACACAGAGTC
ACACGGCATCTTAAAAAACCGAATGTTCGATGAAAAACgaaatttgacat
ttgattATAATCAGGACAATTTTCTTAGTTATTATGGTAGATTTTACAGT
AAAGAACCTTTTTGGTTGACCAACCAAAAGCAAGGAGGAAACAGTTCAGT
ATACCGATGGCCTGGTCATTTAGCTTTTGATGAAAAGCCAAAGTACCACG
AAAACGAAAGCCACATCAATGCGCAGCACTTCACGGACGCGCGAAAAGCT
ATCGATGAGACGTTTGCAAATTTGGAGAAAGATTCTTCATTGAACTTCAT
GGTGGTGTATGTGGATCAACCAGATCCCATTGGACATAAATATGGGGTGA
ACTCCACAGAGTATCGCAACACAATTCAACGATTGGATTCAGAAGTTGTT
GGGTACATCAAGGAGAAATTGAAACCTCACCCTAATGTCGATTTCATTGT
TGTGGCTGACCACGGAATGGCTGATCTGACAGACAATGTGACCACAGTCT
TGTACATGGATGATTGGTTGAAGAAGGATGCATACATTTTGAAAGGTTTT
GAAATGGTCTCACCAACTCAAAATTTCACAGTGGACGACTTGTGGAGGAA
CTTGACCAAACTGAATGATACAGGGATGGCAGAAATCTACAGACAAAACG
ATTCAACATACGATTTTCCATCTCGTTTACATTACAAACATGACCCAAGG
ATTTCACCCATCCTGGTCTTGCCAAAACCGAACTGGAGGATCGCCAAAGG
GAGGAGCAAGAACCTCACTTTCACTATCGGTCAGCATGGTTATGACGTCA
AATTTAAAGAAATGAGTACCATATTCTTTGCTATGGGCCCTTCCTTCAAG
AAAAACATCACCATGGACCCTTTTGAGTCGGTTAATCTCGTCCCCTTGAT
GGCAAATATACTCGGGGTTGAGGCTCAACCGAACAATGGAACAGTAAATA
CATTTAAGAATGTTTTAACTCCACGTGTCAAGCATCAAACGAGAAATGAT
GAAAGATTGAAAGCTAAGGATAGGACTAAACCTATTGTAGGGCCTGATGG
CCTAACAGAGTTCACTCGCTTTATCTATTACTAGCATAAACAGTGCAAAC
TGAAACAACTGCGATGTTCAGGAATCATTGTAACGATTTGGTACAAATAT
GGGGTTGGTATAGATTGCATTTGGATAGGGTTTCGTTCCGTTTATGAGAC
CATTACAGATATGCCAGAACTTCTGAAACAATTCTATATTTACTGTATGA
TCTTTACAATACATCGTGGTGCTGAAGCTGGCAAGAATAAAGTCTTTCTG
TTAGTGCTTGATGGATTGGTATACAATTTTCGTGATTTCACTTCAAATCT
GACGAATTTCAAATACATAGCGGAAAATGGTGTCAGTGCAGAACGCATGG
TGCCTCCTTTTCCTAGTGACACGTGGCCTACCATGACCACTCTCAACACT
GGACTGTACACAGAGTCACACGGCATCTTAAAAAACCGAATGTTCGATGA
AAAACgaaatttgacatttgattATAATCAGGACAATTTTCTTAGTTATT
ATGGTAGATTTTACAGTAAAGAACCTTTTTGGTTGACCAACCAAAAGCAA
GGAGGAAACAGTTCAGTATACCGATGGCCTGGTCATTTAGCTTTTGATGA
AAAGCCAAAGTACCACGAAAACGAAAGCCACATCAATGCGCAGCACTTCA
CGGACGCGCGAAAAGCTATCGATGAGACGTTTGCAAATTTGGAGAAAGAT
TCTTCATTGAACTTCATGGTGGTGTATGTGGATCAACCAGATCCCATTGG
ACATAAATATGGGGTGAACTCCACAGAGTATCGCAACACAATTCAACGAT
TGGATTCAGAAGTTGTTGGGTACATCAAGGAGAAATTGAAACCTCACCCT
AATGTCGATTTCATTGTTGTGGCTGACCACGGAATGGCTGATCTGACAGA
CAATGTGACCACAGTCTTGTACATGGATGATTGGTTGAAGAAGGATGCAT
ACATTTTGAAAGGTTTTGAAATGGTCTCACCAACTCAAAATTTCACAGTG
GACGACTTGTGGAGGAACTTGACCAAACTGAATGATACAGGGATGGCAGA
AATCTACAGACAAAACGATTCAACATACGATTTTCCATCTCGTTTACATT
ACAAACATGACCCAAGGATTTCACCCATCCTGGTCTTGCCAAAACCGAAC
TGGAGGATCGCCAAAGGGAGGAGCAAGAACCTCACTTTCACTATCGGTCA
GCATGGTTATGACGTCAAATTTAAAGAAATGAGTACCATATTCTTTGCTA
TGGGCCCTTCCTTCAAGAAAAACATCACCATGGACCCTTTTGAGTCGGTT
AATCTCGTCCCCTTGATGGCAAATATACTCGGGGTTGAGGCTCAACCGAA
CAATGGAACAGTAAATACATTTAAGAATGTTTTAACTCCACGTGTCAAGC
ATCAAACGAGAAATGATGAAAGATTGAAAGCTAAGGATAGGACTAAACCT
ATTGTAGGGCCTGATGGCCTAACAGAGTTCACTCGCTTTATCTATTACTA
GCATAAACAGTGCAAACTGAAACAACTGCGATGTTCAGGAATCATTGTAA
CGATTTGGTACAAATATGGGGTTGGTATAGATTGCATTTGGATAGGGTTT
CGTTCCGTTTATGAGACCATTACAGATATGCCAGAACTTCTGAAACAATT
CTATATTTACTGTATGATCTTTACAATACATCGTGGTGCTGAAGCTGGCA
AGAATAAAGTCTTTCTGTTAGTGCTTGATGGATTGGTATACAATTTTCGT
GATTTCACTTCAAATCTGACGAATTTCAAATACATAGCGGAAAATGGTGT
CAGTGCAGAACGCATGGTGCCTCCTTTTCCTAGTGACACGTGGCCTACCA
TGACCACTCTCAACACTGGACTGTACACAGAGTCACACGGCATCTTAAAA
AACCGAATGTTCGATGAAAAACgaaatttgacatttgattATAATCAGGA
CAATTTTCTTAGTTATTATGGTAGATTTTACAGTAAAGAACCTTTTTGGT
TGACCAACCAAAAGCAAGGAGGAAACAGTTCAGTATACCGATGGCCTGGT
CATTTAGCTTTTGATGAAAAGCCAAAGTACCACGAAAACGAAAGCCACAT
CAATGCGCAGCACTTCACGGACGCGCGAAAAGCTATCGATGAGACGTTTG
CAAATTTGGAGAAAGATTCTTCATTGAACTTCATGGTGGTGTATGTGGAT
CAACCAGATCCCATTGGACATAAATATGGGGTGAACTCCACAGAGTATCG
CAACACAATTCAACGATTGGATTCAGAAGTTGTTGGGTACATCAAGGAGA
AATTGAAACCTCACCCTAATGTCGATTTCATTGTTGTGGCTGACCACGGA
ATGGCTGATCTGACAGACAATGTGACCACAGTCTTGTACATGGATGATTG
GTTGAAGAAGGATGCATACATTTTGAAAGGTTTTGAAATGGTCTCACCAA
CTCAAAATTTCACAGTGGACGACTTGTGGAGGAACTTGACCAAACTGAAT
GATACAGGGATGGCAGAAATCTACAGACAAAACGATTCAACATACGATTT
TCCATCTCGTTTACATTACAAACATGACCCAAGGATTTCACCCATCCTGG
TCTTGCCAAAACCGAACTGGAGGATCGCCAAAGGGAGGAGCAAGAACCTC
ACTTTCACTATCGGTCAGCATGGTTATGACGTCAAATTTAAAGAAATGAG
TACCATATTCTTTGCTATGGGCCCTTCCTTCAAGAAAAACATCACCATGG
ACCCTTTTGAGTCGGTTAATCTCGTCCCCTTGATGGCAAATATACTCGGG
GTTGAGGCTCAACCGAACAATGGAACAGTAAATACATTTAAGAATGTTTT
AACTCCACGTGTCAAGCATCAAACGAGAAATGATGAAAGATTGAAAGCTA
AGGATAGGACTAAACCTATTGTAGGGCCTGATGGCCTAACAGAGTTCACT
CGCTTTATCTATTACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13953MSTRG.13953Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13953.1.p1MSTRG.13953.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13953.1.p1.exon1MSTRG.13953.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13953.1.p1.exon2MSTRG.13953.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13953.1.p1.exon3MSTRG.13953.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13953.1.p1.exon4MSTRG.13953.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:361898..365652 +