MSTRG.13950.1.p1 (mRNA) -

Overview
NameMSTRG.13950.1.p1
Unique NameMSTRG.13950.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:332815..335153+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13950.1.p1 ID=MSTRG.13950.1.p1|Name=MSTRG.13950.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2339bp|location=Sequence derived from alignment at sc0000114_pilon:332815..335153+ (Clytia hemisphaerica_ch_hm2_pilon)
GCAAAATGGCGTCCGCAAGTGATGAATTAATGAGcgattttgatttaaat
tttgatgcTGAGCTGCCAGAGGAACTTGtgtcgattgaaaatttgatatt
agATGAAGATGTAGAAATTGATGAAGATGAGGAAATACATTTTGATGTGG
AGCCAATAATAGTTGGTGAAGATATTATCCAGGAGGCAGATGAACTTGAA
ATGGACATTGAGTCAGAATCTGCCAACTCTGAAATTTGTATAGTTTTTAC
AAGCGACACAGATGTGGCAATCGTCAAACCCTATACTGAAATAGTTGAAC
ACaaacaagaaacaaagaaaaaacctAATTTATATTGTAAACATTGTGGC
AAGCAGTATGTTATTAAGAAGTACTTGATAGATCACGAAGAATCATGTGG
TGAGTAGCTTTACCTATGTATAACAAAaggttttagttttttctggttTG
TTTTACTTTGATTGCCTGCTCAGGACtgtagaaaattttttgatacttgt
gtatttaaagggataatcagatgtcTTGAGATATTTAGATTAGAGAAACC
TTTTGTgtaaaacctcaaagtattttttgtgtaacaattttccaGCTTCC
agagatatcaaaatttgaaatttttgaaaatgggttaCTGTACACGGTTT
TTatgttgaaattcaatttttttcaaccaaaaacttgtaacttaaatatc
tcgactttggaaaatagttcggcaaaaatattttgagatttgctCGATCA
AGACAATAGAAGAATCCCACATGCCAAAcattacaaaccatctgattatc
cctttaaagacAAATCACTTAAATCCTACCTCTTGAGAAGGGAAAGGAAC
TGAATGGGGGATGTCGACACTTGGCCAACTCACAGGGATACTGTTCATAT
TGACTATCGTATATATTGTAATTGTAATCAAATAACTTGCATCCTATAAT
GACATGTTGACTGTAATCATGATTTATTTCTATTTCAGGATCCAAATCAA
CCAAGAACCTTTCAGAATGGAGGAGCAATATACAAGAACACACATtaagc
tttttcaaaaatgctgTAAGAGAGGCCGCAAAAGACAGAATATTTATTCT
CAAAAAGGAATCTGTCATCCATCAACTTATAAAATATTTGACATCTAAAC
TGGAAGAAAATGACAACgctattttaatttatttcaaacaATTCACCATC
TTCATGCTCCAGTGTGTACCAGACCACCCCTCAAAAATTGAAAGCTGTAC
GTTCAAACTGGAAGAGGTTTTCAGTAGTAAAACGATATGGAAATTTTGGA
GACAAATATTCAAGGACTTTCCAGAGAGCAAAGAACTTCGAATTTTACTC
CATTACATCCTGCACAAGCTTCACAAACAGATCTGGAATTATCGGAATAA
TCTTGTTGAAAACAGGCCTGAAACAAAAGCACTCAGTTTGAAACTTACAC
TCCAGGAGGAGAATATATTGCGATACGTTGCAGGCTACATCCCATATGTA
CTTTTGAAAAAGCTTGAAGATAGGAAGGAATCAGATTCTAAAACTGCATT
GTTGCTAGTGCTCCATAGCTGGAGTCAAGAACAAGGAGGGAAAGTTATCC
CTTTCCTAGAATACACTCGTTCGTGGACTGAAAAGATCAACCGTGGAGGA
GCATATGTCATCAATGATGAGTTTTACATTTTCATTCGCCGTTTGGAAAA
TGTTATTCGTACTGTTCTAAACAGAAATTTGATGGTGCATTATGCTGGAG
AGGATTTAAGGcctttaatttttgagaaaatggacAAGAGTAGTCTTGTG
AGAATGTCATGGGACTCTTTGACAAAAGATTTAAGTGACTCTCTCTCCAA
CTATTTGAAGAGTGCTGTTTTCAAGATATGGACCAATGTTCGAGCTAATG
CTTTCATTAAGGCTTGGGTTACGATCATTAAACTTAAGAAAgaacaataa
aacaaatattgATGATAAGGGAAAACCAGCACTGAGAAAACAGCTTTCAG
GGTAGAATAAGGTTTATTGTTAGTGGTTTAAAAATGGTACAAATTCTGTG
TAAAATCCTCATGGTTTTGGTTTCTCTGAAACTGAAACTTTTAtagttga
aaaattattttaatattcaataaatgtcctaattttgaaaaatagatcaa
aataatttgttttaaaagtggcaaaaatcgTGAGGAATTTTATGCATAAA
TTTTGTTATCATTTTCTGAACGCTAAAAAGACTTGATGCTTGTGTTTAAA
TGCTTTTAAGGTTTGTTTCAAATAAATTGACAGTCAGGACAATCCTTTTG
CaggaacattttttgaatacaTTGTCAATTATGTCATGG

Coding sequence (CDS) from alignment at sc0000114_pilon:332815..335153+

>MSTRG.13950.1.p1 ID=MSTRG.13950.1.p1|Name=MSTRG.13950.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2718bp|location=Sequence derived from alignment at sc0000114_pilon:332815..335153+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAATGGCGTCCGCAAGTGATGAATTAATGAGcgattttgatttaaattt
tgatgcTGAGCTGCCAGAGGAACTTGtgtcgattgaaaatttgatattag
ATGAAGATGTAGAAATTGATGAAGATGAGGAAATACATTTTGATGTGGAG
CCAATAATAGTTGGTGAAGATATTATCCAGGAGGCAGATGAACTTGAAAT
GGACATTGAGTCAGAATCTGCCAACTCTGAAATTTGTATAGTTTTTACAA
GCGACACAGATGTGGCAATCGTCAAACCCTATACTGAAATAGTTGAACAC
aaacaagaaacaaagaaaaaacctAATTTATATTGTAAACATTGTGGCAA
GCAGTATGTTATTAAGAAGTACTTGATAGATCACGAAGAATCATGTGGAT
CCAAATCAACCAAGAACCTTTCAGAATGGAGGAGCAATATACAAGAACAC
ACATtaagctttttcaaaaatgctgTAAGAGAGGCCGCAAAAGACAGAAT
ATTTATTCTCAAAAAGGAATCTGTCATCCATCAACTTATAAAATATTTGA
CATCTAAACTGGAAGAAAATGACAACgctattttaatttatttcaaacaA
TTCACCATCTTCATGCTCCAGTGTGTACCAGACCACCCCTCAAAAATTGA
AAGCTGTACGTTCAAACTGGAAGAGGTTTTCAGTAGTAAAACGATATGGA
AATTTTGGAGACAAATATTCAAGGACTTTCCAGAGAGCAAAGAACTTCGA
ATTTTACTCCATTACATCCTGCACAAGCTTCACAAACAGATCTGGAATTA
TCGGAATAATCTTGTTGAAAACAGGCCTGAAACAAAAGCACTCAGTTTGA
AACTTACACTCCAGGAGGAGAATATATTGCGATACGTTGCAGGCTACATC
CCATATGTACTTTTGAAAAAGCTTGAAGATAGGAAGGAATCAGATTCTAA
AACTGCATTGTTGCTAGTGCTCCATAGCTGGAGTCAAGAACAAGGAGGGA
AAGTTATCCCTTTCCTAGAATACACTCGTTCGTGGACTGAAAAGATCAAC
CGTGGAGGAGCATATGTCATCAATGATGAGTTTTACATTTTCATTCGCCG
TTTGGAAAATGTTATTCGTACTGTTCTAAACAGAAATTTGATGGTGCATT
ATGCTGGAGAGGATTTAAGGcctttaatttttgagaaaatggacAAGAGT
AGTCTTGTGAGAATGTCATGGGACTCTTTGACAAAAGATTTAAGTGACTC
TCTCTCCAACTATTTGAAGAGTGCTGTTTTCAAGATATGGACCAATGTTC
GAGCTAATGCTTTCATTAAGGCTTGGGTTACGATCATTAAACTTAAGAAA
gaacaataaAAAATGGCGTCCGCAAGTGATGAATTAATGAGcgattttga
tttaaattttgatgcTGAGCTGCCAGAGGAACTTGtgtcgattgaaaatt
tgatattagATGAAGATGTAGAAATTGATGAAGATGAGGAAATACATTTT
GATGTGGAGCCAATAATAGTTGGTGAAGATATTATCCAGGAGGCAGATGA
ACTTGAAATGGACATTGAGTCAGAATCTGCCAACTCTGAAATTTGTATAG
TTTTTACAAGCGACACAGATGTGGCAATCGTCAAACCCTATACTGAAATA
GTTGAACACaaacaagaaacaaagaaaaaacctAATTTATATTGTAAACA
TTGTGGCAAGCAGTATGTTATTAAGAAGTACTTGATAGATCACGAAGAAT
CATGTGGATCCAAATCAACCAAGAACCTTTCAGAATGGAGGAGCAATATA
CAAGAACACACATtaagctttttcaaaaatgctgTAAGAGAGGCCGCAAA
AGACAGAATATTTATTCTCAAAAAGGAATCTGTCATCCATCAACTTATAA
AATATTTGACATCTAAACTGGAAGAAAATGACAACgctattttaatttat
ttcaaacaATTCACCATCTTCATGCTCCAGTGTGTACCAGACCACCCCTC
AAAAATTGAAAGCTGTACGTTCAAACTGGAAGAGGTTTTCAGTAGTAAAA
CGATATGGAAATTTTGGAGACAAATATTCAAGGACTTTCCAGAGAGCAAA
GAACTTCGAATTTTACTCCATTACATCCTGCACAAGCTTCACAAACAGAT
CTGGAATTATCGGAATAATCTTGTTGAAAACAGGCCTGAAACAAAAGCAC
TCAGTTTGAAACTTACACTCCAGGAGGAGAATATATTGCGATACGTTGCA
GGCTACATCCCATATGTACTTTTGAAAAAGCTTGAAGATAGGAAGGAATC
AGATTCTAAAACTGCATTGTTGCTAGTGCTCCATAGCTGGAGTCAAGAAC
AAGGAGGGAAAGTTATCCCTTTCCTAGAATACACTCGTTCGTGGACTGAA
AAGATCAACCGTGGAGGAGCATATGTCATCAATGATGAGTTTTACATTTT
CATTCGCCGTTTGGAAAATGTTATTCGTACTGTTCTAAACAGAAATTTGA
TGGTGCATTATGCTGGAGAGGATTTAAGGcctttaatttttgagaaaatg
gacAAGAGTAGTCTTGTGAGAATGTCATGGGACTCTTTGACAAAAGATTT
AAGTGACTCTCTCTCCAACTATTTGAAGAGTGCTGTTTTCAAGATATGGA
CCAATGTTCGAGCTAATGCTTTCATTAAGGCTTGGGTTACGATCATTAAA
CTTAAGAAAgaacaataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13950MSTRG.13950Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13950.1.p1.exon1MSTRG.13950.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13950.1.p1.exon2MSTRG.13950.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13950.1.p1MSTRG.13950.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:332815..335153 +