MSTRG.13940.1.p1 (mRNA) -

Overview
NameMSTRG.13940.1.p1
Unique NameMSTRG.13940.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:181452..183379+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13940.1.p1 ID=MSTRG.13940.1.p1|Name=MSTRG.13940.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1928bp|location=Sequence derived from alignment at sc0000114_pilon:181452..183379+ (Clytia hemisphaerica_ch_hm2_pilon)
TAGTAATGTAATAACCATTGTGTTTCAATTTCAGTAAATATAGGACCAGT
TtgtgaaattttgtgtgatTATACTTTATCCGTTTTTAAGGAAAGGAAAG
TTCACTTCCTTGTTAAAAAGCAATGTCCTCTGAAACCAAAGAAAGTTTAT
TTGATGTGGGAAATGGTATAAAATTATGGTATAGAACCTGGGGAAACTCT
ACTGGCATTCCAGTATTATTTGTTCATGGTGGTCCTGGTAATTGTGTAGC
CGATTATGATGGTATAAACGAAAAGTTCTTTAACAAAGAGcaatattttg
ttgttgagattGATCAAAGAGGTACAGGAAATTCTCTGCCAAGTGTTAGA
GATGGTCACAAAAATATGCCAATgtataaagatatttcaatcaCTCAAAT
GGCAGCTGACTTTGAAAAAATCAGACAAGAACTAGGTAAGACTAGACTCT
TTTTCGAATTTCCGGTAAAAAGCTAATGTATGGCTGTACCAggtgcacca
caaaaaagttttttcctttCAAGAAAACTTTCTTGTGTTCTATGACTTTT
gacaaactgaaaaataaacttaaatcttgtgggtcatttatcaaatttgg
ttCTTTGAATCAAAAGATAGCAAGACATGTAATGAATTTATCTCAAACCT
ATACTTGAtgtattttcatgaaatttaacatattattttctccattttct
gGCCACAAGtttttttGatcaaattgaaattcaaaggtAATTTTTACagt
taattatcatttttaatcaaTGGAACAAAGAAATTGTTGTAACCTTGAAG
AAGTTTTTAAGGTTCAATTTCAATATGTCGATTTTTAATGTTCTTAAGTA
CTAGTAAagtttttaattcttttaaacATTTGATCTAACAAATCAAATTT
ATTATTCTATCCATGAAAATCTAAGTTTatctttcctctttccaatACAA
AGAAATTTACTCTTTCAGAGTTTAGTGAATCAAGTcaattttgctgaatt
ttttaATTCTAGGGATATCTCAGTGGTTGGTATTTGGTGGTTCTTGGGGA
AGTACATTGGGATTGTATTATGCAGAAAACTATCCATCAAAATGTCTGGG
CCTTATCATCCGCGGAATCTTTTTGAACACAAAGGATGAGTTTGATGCTG
TGTATTCGCAAAAACCTTTTGAAGCAGATGCAAAACGTTTGGCAGAGTTC
AATACATTCTTTGAGCTAGCTTCAAATGAAGCAAAGAACTCACAAGAGCA
AACCCTTGACCCTAATGATTCAGAAAGAATGATAAGATTGTATGAAAAAA
TGATTCTAAGAGGCGATAGAGATGCAATCTGgagattttatgtttttgaa
aataatcttgTGGAAGAAGATGAATCAAAATTATTGTACCCTTTAAAGGT
TTGTCTTCCCATTGTTTTGCAGGTGTACTGATAtcattttctgaaagaag
aaGACAATAAGTTTATGAAATGGACTTCATTTCCAAAGGATACCCTatta
ttctttttctttcttttgttaggTTTCGGAAGGTGAATTTCCAACAGCTC
TTTCAGTATCATTTTTCGAAGCTCGTTTATTTTTGAGGGGTACTTTTGAG
CATCCCTTAACTTTGATGGAAGAtgtcaagaaattaaaagagggTACCAC
AGGTCCTGTCAAAACATGGGTTGTTCAAGGGACAGGTGATGAAGTTTGCC
CTGATCGATTTGCAAGGGATCTGGTAGATCAACTAAAGAAAGAATCTATT
CCTACCACATCACATTTCGTAGATGCTGGACATAAAGCAAGTTCAGATGG
TGTTTTCAAAGCCCTTCAAGATTGTATTAAAGATTTTAATGAATATTACA
CAAAGTAGATTTGAATATTAAGTTTAAGGCATTGTTTTACTTTTAAAGAT
TCGAGCTTTAAATTTCCCTGTCTtgaag

Coding sequence (CDS) from alignment at sc0000114_pilon:181452..183379+

>MSTRG.13940.1.p1 ID=MSTRG.13940.1.p1|Name=MSTRG.13940.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3105bp|location=Sequence derived from alignment at sc0000114_pilon:181452..183379+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCCTCTGAAACCAAAGAAAGTTTATTTGATGTGGGAAATGGTATAAA
ATTATGGTATAGAACCTGGGGAAACTCTACTGGCATTCCAGTATTATTTG
TTCATGGTGGTCCTGGTAATTGTGTAGCCGATTATGATGGTATAAACGAA
AAGTTCTTTAACAAAGAGcaatattttgttgttgagattGATCAAAGAGG
TACAGGAAATTCTCTGCCAAGTGTTAGAGATGGTCACAAAAATATGCCAA
TgtataaagatatttcaatcaCTCAAATGGCAGCTGACTTTGAAAAAATC
AGACAAGAACTAGGGATATCTCAGTGGTTGGTATTTGGTGGTTCTTGGGG
AAGTACATTGGGATTGTATTATGCAGAAAACTATCCATCAAAATGTCTGG
GCCTTATCATCCGCGGAATCTTTTTGAACACAAAGGATGAGTTTGATGCT
GTGTATTCGCAAAAACCTTTTGAAGCAGATGCAAAACGTTTGGCAGAGTT
CAATACATTCTTTGAGCTAGCTTCAAATGAAGCAAAGAACTCACAAGAGC
AAACCCTTGACCCTAATGATTCAGAAAGAATGATAAGATTGTATGAAAAA
ATGATTCTAAGAGGCGATAGAGATGCAATCTGgagattttatgtttttga
aaataatcttgTGGAAGAAGATGAATCAAAATTATTGTACCCTTTAAAGg
TTTCGGAAGGTGAATTTCCAACAGCTCTTTCAGTATCATTTTTCGAAGCT
CGTTTATTTTTGAGGGGTACTTTTGAGCATCCCTTAACTTTGATGGAAGA
tgtcaagaaattaaaagagggTACCACAGGTCCTGTCAAAACATGGGTTG
TTCAAGGGACAGGTGATGAAGTTTGCCCTGATCGATTTGCAAGGGATCTG
GTAGATCAACTAAAGAAAGAATCTATTCCTACCACATCACATTTCGTAGA
TGCTGGACATAAAGCAAGTTCAGATGGTGTTTTCAAAGCCCTTCAAGATT
GTATTAAAGATTTTAATGAATATTACACAAAGTAGATGTCCTCTGAAACC
AAAGAAAGTTTATTTGATGTGGGAAATGGTATAAAATTATGGTATAGAAC
CTGGGGAAACTCTACTGGCATTCCAGTATTATTTGTTCATGGTGGTCCTG
GTAATTGTGTAGCCGATTATGATGGTATAAACGAAAAGTTCTTTAACAAA
GAGcaatattttgttgttgagattGATCAAAGAGGTACAGGAAATTCTCT
GCCAAGTGTTAGAGATGGTCACAAAAATATGCCAATgtataaagatattt
caatcaCTCAAATGGCAGCTGACTTTGAAAAAATCAGACAAGAACTAGGG
ATATCTCAGTGGTTGGTATTTGGTGGTTCTTGGGGAAGTACATTGGGATT
GTATTATGCAGAAAACTATCCATCAAAATGTCTGGGCCTTATCATCCGCG
GAATCTTTTTGAACACAAAGGATGAGTTTGATGCTGTGTATTCGCAAAAA
CCTTTTGAAGCAGATGCAAAACGTTTGGCAGAGTTCAATACATTCTTTGA
GCTAGCTTCAAATGAAGCAAAGAACTCACAAGAGCAAACCCTTGACCCTA
ATGATTCAGAAAGAATGATAAGATTGTATGAAAAAATGATTCTAAGAGGC
GATAGAGATGCAATCTGgagattttatgtttttgaaaataatcttgTGGA
AGAAGATGAATCAAAATTATTGTACCCTTTAAAGgTTTCGGAAGGTGAAT
TTCCAACAGCTCTTTCAGTATCATTTTTCGAAGCTCGTTTATTTTTGAGG
GGTACTTTTGAGCATCCCTTAACTTTGATGGAAGAtgtcaagaaattaaa
agagggTACCACAGGTCCTGTCAAAACATGGGTTGTTCAAGGGACAGGTG
ATGAAGTTTGCCCTGATCGATTTGCAAGGGATCTGGTAGATCAACTAAAG
AAAGAATCTATTCCTACCACATCACATTTCGTAGATGCTGGACATAAAGC
AAGTTCAGATGGTGTTTTCAAAGCCCTTCAAGATTGTATTAAAGATTTTA
ATGAATATTACACAAAGTAGATGTCCTCTGAAACCAAAGAAAGTTTATTT
GATGTGGGAAATGGTATAAAATTATGGTATAGAACCTGGGGAAACTCTAC
TGGCATTCCAGTATTATTTGTTCATGGTGGTCCTGGTAATTGTGTAGCCG
ATTATGATGGTATAAACGAAAAGTTCTTTAACAAAGAGcaatattttgtt
gttgagattGATCAAAGAGGTACAGGAAATTCTCTGCCAAGTGTTAGAGA
TGGTCACAAAAATATGCCAATgtataaagatatttcaatcaCTCAAATGG
CAGCTGACTTTGAAAAAATCAGACAAGAACTAGGGATATCTCAGTGGTTG
GTATTTGGTGGTTCTTGGGGAAGTACATTGGGATTGTATTATGCAGAAAA
CTATCCATCAAAATGTCTGGGCCTTATCATCCGCGGAATCTTTTTGAACA
CAAAGGATGAGTTTGATGCTGTGTATTCGCAAAAACCTTTTGAAGCAGAT
GCAAAACGTTTGGCAGAGTTCAATACATTCTTTGAGCTAGCTTCAAATGA
AGCAAAGAACTCACAAGAGCAAACCCTTGACCCTAATGATTCAGAAAGAA
TGATAAGATTGTATGAAAAAATGATTCTAAGAGGCGATAGAGATGCAATC
TGgagattttatgtttttgaaaataatcttgTGGAAGAAGATGAATCAAA
ATTATTGTACCCTTTAAAGgTTTCGGAAGGTGAATTTCCAACAGCTCTTT
CAGTATCATTTTTCGAAGCTCGTTTATTTTTGAGGGGTACTTTTGAGCAT
CCCTTAACTTTGATGGAAGAtgtcaagaaattaaaagagggTACCACAGG
TCCTGTCAAAACATGGGTTGTTCAAGGGACAGGTGATGAAGTTTGCCCTG
ATCGATTTGCAAGGGATCTGGTAGATCAACTAAAGAAAGAATCTATTCCT
ACCACATCACATTTCGTAGATGCTGGACATAAAGCAAGTTCAGATGGTGT
TTTCAAAGCCCTTCAAGATTGTATTAAAGATTTTAATGAATATTACACAA
AGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13940MSTRG.13940Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13940.1.p1MSTRG.13940.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13940.1.p1.exon1MSTRG.13940.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13940.1.p1.exon2MSTRG.13940.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13940.1.p1.exon3MSTRG.13940.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:181452..183379 +