MSTRG.13939.4.p1 (mRNA) -

Overview
NameMSTRG.13939.4.p1
Unique NameMSTRG.13939.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000114_pilon:156878..160797+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13939.4.p1 ID=MSTRG.13939.4.p1|Name=MSTRG.13939.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3920bp|location=Sequence derived from alignment at sc0000114_pilon:156878..160797+ (Clytia hemisphaerica_ch_hm2_pilon)
GGTAGGACTAAAGCCCCAGAACCATTAACCATTGCAGAGAATTTGGGTTG
CGTCTCTTGTATGGCTTTTTCGAAAGATGATCAGCATTTGGCTATCTGTA
TATCTAATGAAATATGGGTCATCAATACCCTGGTAGTTATTTGCTATCTA
ATAGATTTTTTGCATACTTTTCCATTATCAAACTACCCTACTATAAATTT
TCCATCTGAACATATTTTggattaggcgagaccaattgaGTCGGTCAGTc
tgtataataaaaataaatttctctaAATCTGTGATGTGCCAAAGTCAAGA
TCTAAAAATTTTGTGGCGTTTTGAATTGGAACACTTTCTCCCTTTCATCA
ATGAGTGACTTTTGCGCTGTTTCCATTGTGATATTTTAAATTCATCTGCG
TTCTAGgataaatttagatttttcaacTTGTCCCTGGTTAAAAATATCCG
CAAAAAACTTATAAAGTCTTTTGTCCAGCTTTCAAATTcaacattattat
tttttagatgTTGTATAAAAACAGAGtagaacaaaaaattaatttggttg
aaaaaatcaACCATATATATCAGTATTGTAGACAAGAAGGGCGTAAAATT
TGTGCAggagatttttatgacactgtataattatcttttcataataaaaa
gataattactatgtcctacacaaattttgagcCTCTCTTGTCTATGTTAT
TGTGTCTCCCTATAAATAGTGACAGTATGCAACATAGGTTTAAAGTGGAA
CATTTTCCATTCAACTTTTAatcatttatttatattatcTTCCCTGTTTT
TATAGAAGAAGAGCTTTGCATAACATTGCAGGTCATTTTCCTTTTATTAC
ATAAGGAAAACTCAatcactggttcttataaacaTTAGAAATAAAATATG
TTATTAAGTCAAATTAAGCAACGGAGGTATTAAAAAGTTTTCGTAAAAag
cttcaattttattttcatgtttttctttccaAGAACTCAGAGTTGGTGGT
TGAATTTTCAGCATCACAAAGTTTCATCATTTTGGTGGGATTTTGTTTGA
CTATTGAAGACATGCTGATCTCCATTGCTGAAGATAGAACTTATTGTGTG
AGTTATTTCTTTGAGTTGAGTATGTTTAATAAATAATATTCCGCTTCGCT
TTGTTGGATTTCGTACCACCTAGGTTAATAAATCCTAATAAGCCATGTTT
ACccattgaatatatgttttattacaTACTTCACTACattttaactaaaa
aaatatttcgactAGCTGTTTACACaaaaattagtccttgcgaaaaaaga
ttaaaatcagaaatttggtcaaacgctatgaaaaataaaagctATTGGTA
GCCCATTTGCAAAGTCTTTTCCACGTTAAGATTTCCGAATCCCGAGTcca
gtcaaaaattttgattcacTTATAAGTTAGTTTTAACTAACACTGAATAC
CACTAAAATaatgaaatcttaaaaatagaGTTGCTTAAGTTATTAACTTT
TAGAAACAATAAGTGATCAGATCCTTTAAGTTTCAAGTGGAAACCTTTAG
GACTCACATGCATAGCCTCAATATTCCTTTGTAAGCTTCCAATTCCAATA
CCACAAGTTCACTAAAACGActattttaaacaatattttgaatttagatT
TGGGACGTGGGAGAGAAAGAACAACTGTATCAATCAACTATAATTTCATG
TAATTACTTTCACTAATATTTTTCTGATAGACAGAGAGTGACACTTTCTA
AAACAATAATGCAGATAGTTTATTTTGCTTTGAAGTTTTTCTATGCTTAA
AATCCATCATTTAAAATCCTTTGAATACCACGAGGTTTCCTCAATGCAAG
GAGCAGTAcccaatcaaaataaaattgtgaacaaaattaatttcttgACA
AAAAAGTCATTCCCGTCATTCCAACTTGGATATCTAATGTCAAAATGGTC
AAAGATATATAGTACATACACATTGTGTACTCAAAATTAGGGTGATGGTA
TTACGAAAAACCTTCTAGTAATACTCGTAAATGTTttagattttagtact
gaccccctcGCTTCAAAGCTGTTATAAATAAGTTATGTAGtgttttattt
gaatttcagcGTTTCAATTTCAATCACTTGCTGTGCACCCGCTAGAGAGT
TATTTTGCCACAGGGTCAGAAGATGGCATGGTAATAAACTATTCTACCTT
CATCTTTCCTTAGCAGTACAAGTTCTTATTGAAGATAAAATAAAACGTGT
CTGGTTTAAAATTGACAATTTGTCAAAATGGCTTCATTGTTTACCCTGTA
AGTTGGTTAACATTAACCACCCCTCCTGATTTAAAAAACACTAATTGGat
cctctcttcatcaagcatcctctcttcatcaagcatcctctcttcatcaa
gcatcctctcttcatcaagtatcctctcttcatcaagtatcctctcttca
tcaagtatcctctcttcatcaagtatcctctcttcatcaagtatcCTATT
CTTCCTATCTTTCCTATAAGTGAGTGACAAAATAAGAAGAGGATAGCTGG
CATTAATCCAAATTAAAATAATTCTGcacttttttcattcacttgccatc
gattgaacaattcattttatcaattttatttattttttcattttcctttc
cAGCTTAGAGTGTTTGATATGACACTGCATAGCAGTTTACATGAAGTCAA
TATTTTACAATTGCTGAATAAAGGTATGATTTATTTGTTTTCCCTTTCAG
GACATTCATCAGTAGGTGTCTAGAGACTAAGCATATACAAACTATTCTAA
AGAGAAATGTTGTATATATTGAAAATCTCACTACCTTCAAATAAAGCTAA
CTAATTTTAGCAAGTATCAAAAGTCCTTAAAAGAATTGATTTGGTgagaa
caatttttcaattttgaccagACCTAGTTTTGTCAAGCTAtccaaggttt
tttttttttagttttggagTGAAAAACAGTTAGTCATCGGAATCTTTCTT
CCCTGTTGTttattttcatcagcatttcacgTCTTAGATTTTGACAACAT
CACAGAGTGTTCGGTTTTATCAttaaaatattggaaaagaAAAGCTTCTT
TTGCACAATCGTAAGTGCCTTAATGTCGTATCAAGTAATTTATTAGCTCA
ATCATATCCATGTTTTTGATTTCGAACTTTATTTAGAGATGAaggaaagg
aaatatttaatttaatttatcaAATTAGGATTAGCAACAccatttttctt
agatttttatAGCTTCACTTTTGTCAAGGGGCGTTTTGACAAGGGCTATG
AGAAAGTCCCTGTTGAATCAAAAGCTTTATCTTggagtttttgttttctt
atatTGCCTTATTCTTTTTTACATGTTCAGAAAACTGGCGGAGGAGTTGT
ACTTGGCCATAGGCTGCTACTTAGGATTTCTCATTTTCAATGCTAATTCC
ATGGAAGTGATATACacatttttgtttgattgtaaGAATgtcgatttttt
tattgaatgtAGCATTTGAAATAATACGGATCctttgaaatctaaaattt
cctTTTACGTCATTTCACGTGTTCGAGGTGTGTTGGGAATTCAAAAACAT
GTCATATCATGTCATCCAAGGTTAGAATAAGAAAGACAACTTGCAGAGAA
GATTTATTTCATGAATTGCACAATTTTTCAGATGAGATTCACGACAATGG
GTTATCAAATCAATACAAAGCCTTCCAAAATGCGACACAGATCGATTTTT
CAGCACCAATAGAACAAAATCGGGTAAGTTGCTCAGTCTTGACAGTCTTT
GCGTTTAATTTATCCAAGTAATAGATGTTTGACTGTTCCCATTCTgttaa
aatgctttttttgagAGACATCAACATTCTCTTGTATATTTCTCATGGAA
TATTCCATAATATCATTTTA

Coding sequence (CDS) from alignment at sc0000114_pilon:156878..160797+

>MSTRG.13939.4.p1 ID=MSTRG.13939.4.p1|Name=MSTRG.13939.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3801bp|location=Sequence derived from alignment at sc0000114_pilon:156878..160797+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTGATCTCCATTGCTGAAGATAGAACTTATTGTatTTGGGACGTGGG
AGAGAAAGAACAACTGTATCAATCAACTATAATTTCATcGTTTCAATTTC
AATCACTTGCTGTGCACCCGCTAGAGAGTTATTTTGCCACAGGGTCAGAA
GATGGCATGCTTAGAGTGTTTGATATGACACTGCATAGCAGTTTACATGA
AGTCAATATTTTACAATTGCTGAATAAAGATTTTGACAACATCACAGAGT
GTTCGGTTTTATCAttaaaatattggaaaagaAAAGCTTCTTTTGCACAA
TCAAAACTGGCGGAGGAGTTGTACTTGGCCATAGGCTGCTACTTAGGATT
TCTCATTTTCAATGCTAATTCCATGGAAGTGATATACacatttttgtttg
attATGAGATTCACGACAATGGGTTATCAAATCAATACAAAGCCTTCCAA
AATGCGACACAGATCGATTTTTCAGCACCAATAGAACAAAATCGGGTAAG
TTGCTCAGTCTTGACAGTCTTTGCGTTTAATTTATCCAAGTAAATGCTGA
TCTCCATTGCTGAAGATAGAACTTATTGTatTTGGGACGTGGGAGAGAAA
GAACAACTGTATCAATCAACTATAATTTCATcGTTTCAATTTCAATCACT
TGCTGTGCACCCGCTAGAGAGTTATTTTGCCACAGGGTCAGAAGATGGCA
TGCTTAGAGTGTTTGATATGACACTGCATAGCAGTTTACATGAAGTCAAT
ATTTTACAATTGCTGAATAAAGATTTTGACAACATCACAGAGTGTTCGGT
TTTATCAttaaaatattggaaaagaAAAGCTTCTTTTGCACAATCAAAAC
TGGCGGAGGAGTTGTACTTGGCCATAGGCTGCTACTTAGGATTTCTCATT
TTCAATGCTAATTCCATGGAAGTGATATACacatttttgtttgattATGA
GATTCACGACAATGGGTTATCAAATCAATACAAAGCCTTCCAAAATGCGA
CACAGATCGATTTTTCAGCACCAATAGAACAAAATCGGGTAAGTTGCTCA
GTCTTGACAGTCTTTGCGTTTAATTTATCCAAGTAAATGCTGATCTCCAT
TGCTGAAGATAGAACTTATTGTatTTGGGACGTGGGAGAGAAAGAACAAC
TGTATCAATCAACTATAATTTCATcGTTTCAATTTCAATCACTTGCTGTG
CACCCGCTAGAGAGTTATTTTGCCACAGGGTCAGAAGATGGCATGCTTAG
AGTGTTTGATATGACACTGCATAGCAGTTTACATGAAGTCAATATTTTAC
AATTGCTGAATAAAGATTTTGACAACATCACAGAGTGTTCGGTTTTATCA
ttaaaatattggaaaagaAAAGCTTCTTTTGCACAATCAAAACTGGCGGA
GGAGTTGTACTTGGCCATAGGCTGCTACTTAGGATTTCTCATTTTCAATG
CTAATTCCATGGAAGTGATATACacatttttgtttgattATGAGATTCAC
GACAATGGGTTATCAAATCAATACAAAGCCTTCCAAAATGCGACACAGAT
CGATTTTTCAGCACCAATAGAACAAAATCGGGTAAGTTGCTCAGTCTTGA
CAGTCTTTGCGTTTAATTTATCCAAGTAAATGCTGATCTCCATTGCTGAA
GATAGAACTTATTGTatTTGGGACGTGGGAGAGAAAGAACAACTGTATCA
ATCAACTATAATTTCATcGTTTCAATTTCAATCACTTGCTGTGCACCCGC
TAGAGAGTTATTTTGCCACAGGGTCAGAAGATGGCATGCTTAGAGTGTTT
GATATGACACTGCATAGCAGTTTACATGAAGTCAATATTTTACAATTGCT
GAATAAAGATTTTGACAACATCACAGAGTGTTCGGTTTTATCAttaaaat
attggaaaagaAAAGCTTCTTTTGCACAATCAAAACTGGCGGAGGAGTTG
TACTTGGCCATAGGCTGCTACTTAGGATTTCTCATTTTCAATGCTAATTC
CATGGAAGTGATATACacatttttgtttgattATGAGATTCACGACAATG
GGTTATCAAATCAATACAAAGCCTTCCAAAATGCGACACAGATCGATTTT
TCAGCACCAATAGAACAAAATCGGGTAAGTTGCTCAGTCTTGACAGTCTT
TGCGTTTAATTTATCCAAGTAAATGCTGATCTCCATTGCTGAAGATAGAA
CTTATTGTatTTGGGACGTGGGAGAGAAAGAACAACTGTATCAATCAACT
ATAATTTCATcGTTTCAATTTCAATCACTTGCTGTGCACCCGCTAGAGAG
TTATTTTGCCACAGGGTCAGAAGATGGCATGCTTAGAGTGTTTGATATGA
CACTGCATAGCAGTTTACATGAAGTCAATATTTTACAATTGCTGAATAAA
GATTTTGACAACATCACAGAGTGTTCGGTTTTATCAttaaaatattggaa
aagaAAAGCTTCTTTTGCACAATCAAAACTGGCGGAGGAGTTGTACTTGG
CCATAGGCTGCTACTTAGGATTTCTCATTTTCAATGCTAATTCCATGGAA
GTGATATACacatttttgtttgattATGAGATTCACGACAATGGGTTATC
AAATCAATACAAAGCCTTCCAAAATGCGACACAGATCGATTTTTCAGCAC
CAATAGAACAAAATCGGGTAAGTTGCTCAGTCTTGACAGTCTTTGCGTTT
AATTTATCCAAGTAAATGCTGATCTCCATTGCTGAAGATAGAACTTATTG
TatTTGGGACGTGGGAGAGAAAGAACAACTGTATCAATCAACTATAATTT
CATcGTTTCAATTTCAATCACTTGCTGTGCACCCGCTAGAGAGTTATTTT
GCCACAGGGTCAGAAGATGGCATGCTTAGAGTGTTTGATATGACACTGCA
TAGCAGTTTACATGAAGTCAATATTTTACAATTGCTGAATAAAGATTTTG
ACAACATCACAGAGTGTTCGGTTTTATCAttaaaatattggaaaagaAAA
GCTTCTTTTGCACAATCAAAACTGGCGGAGGAGTTGTACTTGGCCATAGG
CTGCTACTTAGGATTTCTCATTTTCAATGCTAATTCCATGGAAGTGATAT
ACacatttttgtttgattATGAGATTCACGACAATGGGTTATCAAATCAA
TACAAAGCCTTCCAAAATGCGACACAGATCGATTTTTCAGCACCAATAGA
ACAAAATCGGGTAAGTTGCTCAGTCTTGACAGTCTTTGCGTTTAATTTAT
CCAAGTAAATGCTGATCTCCATTGCTGAAGATAGAACTTATTGTatTTGG
GACGTGGGAGAGAAAGAACAACTGTATCAATCAACTATAATTTCATcGTT
TCAATTTCAATCACTTGCTGTGCACCCGCTAGAGAGTTATTTTGCCACAG
GGTCAGAAGATGGCATGCTTAGAGTGTTTGATATGACACTGCATAGCAGT
TTACATGAAGTCAATATTTTACAATTGCTGAATAAAGATTTTGACAACAT
CACAGAGTGTTCGGTTTTATCAttaaaatattggaaaagaAAAGCTTCTT
TTGCACAATCAAAACTGGCGGAGGAGTTGTACTTGGCCATAGGCTGCTAC
TTAGGATTTCTCATTTTCAATGCTAATTCCATGGAAGTGATATACacatt
tttgtttgattATGAGATTCACGACAATGGGTTATCAAATCAATACAAAG
CCTTCCAAAATGCGACACAGATCGATTTTTCAGCACCAATAGAACAAAAT
CGGGTAAGTTGCTCAGTCTTGACAGTCTTTGCGTTTAATTTATCCAAGTA
A
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13939MSTRG.13939Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13939.4.p1MSTRG.13939.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13939.4.p1.exon1MSTRG.13939.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13939.4.p1.exon2MSTRG.13939.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13939.4.p1.exon3MSTRG.13939.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13939.4.p1.exon4MSTRG.13939.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13939.4.p1.exon5MSTRG.13939.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13939.4.p1.exon6MSTRG.13939.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13939.4.p1.exon7MSTRG.13939.4.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13939.4.p1.exon8MSTRG.13939.4.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000114_pilongenomesc0000114_pilon:156878..160797 +