MSTRG.13878.1.p1 (mRNA) -

Overview
NameMSTRG.13878.1.p1
Unique NameMSTRG.13878.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000113_pilon:440776..444899+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13878.1.p1 ID=MSTRG.13878.1.p1|Name=MSTRG.13878.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4124bp|location=Sequence derived from alignment at sc0000113_pilon:440776..444899+ (Clytia hemisphaerica_ch_hm2_pilon)
CAAAAACATACTTTAGCTGGATTAATTTTTGCATGATTTGATTTCAGATT
cacaattttttgcatttttttgcagaaataAAACTGGGTGTGGATTAGTG
TATTCATAAGAATATTcaTtatttaaactttttataacaaaatattttag
tgaactgtataaacataaaaacaaaacaagatggttGCTTACTGGAGACA
AGCTGGCTTGAACTACTTGCAATTTTCACGTCTGGCGTCACAAACATTAC
GAAAGTGCTTGAAACCTGAATTCCAAACTGAAGCTGTGATGCAAAAACAA
TCTGAATTGAAAATGATCAAATGGGAAGGTGGTAAACCAACTGGAGAGAC
CAAGTCAATTAAACTCTAAATTAAAAGACTAACTAAAATGGTTGAGTagg
aatttttttattgtatacatcattttgaaaaagacatgactaaaaaaaat
tgctgaaaatatattttagttttttttttgcattcctAAATATTCCCCAG
AAGAATCTGTTGTGCATTCATttacttaaaatttcaaaaagctcCTTGTC
AAAGTATATTTGAAGTATAGTATCTTTTAGAATTTGAACTAAGCTTTTAT
CAAACCTCCTAATATCCATTAATCTAAGGGTATCTAATGAAACTTCAGTA
TAACACATTGTTTAGTATAGTCTAGTCTCTGATGAGCAaagtactttttt
tcttttttttttggttttagaaAGTAAATGAAATAATTAACTTACTAGAT
TGGACCCATCCTTGAGTAGGCTGAAATATTAAAAGTCCACAATGGAAAAC
AATCTTGCTACTACAACTTTTGAGGAATGTTATTCAAGCTTTGAAGGCTT
ACCCAGCAAACTCAACGAGGTTTACATCAGCAAAAGTGAACGCATCAATC
AGTTGGTGATACTTTTCCCTGGTGATGTTCAGGTAATTGATTCAAAGTTA
CCCTAAGGGGATTAATTATGGCAAAACCtatattgacctctatgaaagaA
ACGGAAATTAAAACTGCCAAATTTGCTAGAATTACGAAATTAGTTCTCCC
CACCATTAAAATTGCCTTAATATGATAAATATTGCACTTTTCAATAATCA
GGAAAATGTTTCTAGCCCTACTTGTTATAAATTGTTTTCAGTTTTGAGGA
ACTATAACCCATGATCACTACCACAAAGCAAATATTTAAATCcccaggtt
ttttttaatccttTTTCACTTTCAAGGATCACTAAGTTTCTTTACTTTCT
CACTTTGTCACAGGAATGTTATAAAGACATGATGTTAAGACGAGATACAA
GATACAAAGAATTTTGTTACGAAAATTGTACTAAATGGTTACACCAAGTT
TTTAATGATAGTTGTATTTTCGTTGTCAAGCCATCAAGAATGCACCTTCA
CACGTTTGCTTGTTATGAACACTTCTTGGACACTAACGATGTGGGTATGC
CAAACTATAAAACGGAAGATAAGCCAAAGGCATGGTTACACTTGAGAGCG
CTCCTTCAAAGTTGCACTTCGAAATGTGAGTATAGTCTGGTATAATTCAT
CTTTTTATCATTTCAGTAGGGCCTATATCAGCctatataaataaaaatgt
tcatttaatttgcaaaagaaccttgaaataggctcttccagaaaatgttc
ataCACCCCAGGTGGAGGATATCCTTGTCCGGGGTagcgaaaatcatcaa
aatttgactggggggtaaatttgctctgtctgGGGATTGTctggggggtc
aactgatgcttgtccggggagtaaaacctgttgtccgggggctaaaagtc
actttgtccgggggtaaatcagtgaaaattgttatatcctacAccccccc
cATATAgaaatattttctggaagagcccaatcttgGAATAAGTTTCATCG
AAGGGAAATTGGTGACTCTGTCTTATCCTATCATTCTGCTGTGTGGTTTT
AATTTGACTGATTTCAAACTTTATCTTAAATCATAGATGATGCTGACAAA
ACGTGGAATGACAAACCAATATCACTTGTTTCTTTCAGTAAAGGCTGTAT
TGTTTTGAATCAGTTGGTTTTAGAATTACCATTATTAGTTGAAACACAAA
AACAGTCTCTTTTGACCAACATTCAAACGTTTTGTTGGTTGGATGGTGGT
GTACCAGGAAACAGTGGAGCGTATCCACGTAATGAAAAATGTATTGAACT
TTTATCAAAACATGTTCCAAACATTGAGGTTCATACCACGCCCTATCAGA
TGAAAGACCCTTTACGTGTTTGgattttaaaagagaaaaaacgtTTTGTA
CAGCTCTTGAAGAAATATAAAGCCGGATTGATAGACTGCTCGTATTTTGA
AAATGGCGTACCAGATTTAAATATGCATTTTAATTTGATACATAGTTTTC
GTAGATAGTATATTTTGTTATATTGGGGTGGGAATCAATATTTTAACTTG
TAAATATAGTCTTCGAAAGTTAGAAACAATTCTGGTCATCTGTGAAACCT
GATCAGACAATTAGAATATAGTTCCTGTGATCACATAACTTAAAACATTC
ATAATTAAAGCTTTTGATGTTTCCCTTTTCTGTTGCCCACTCTTCTCTAT
TGAGaatataaactttttattttatgatcGTCAAAATTTAGGGTTTAGTT
TCTGTTTTACCATACTTAAAGCAAGCCAACCAATTTTTAAATCTGATTAA
AATCAGAATTTAGACTATATAAATTACATTATCACtgcaaattgattttt
tctcttttagatTTTAATTAATGCATTGTGATAAACCTGTAAATAGATGG
CATGTGTTCAGAAATGGCTAAATTTAATACtggttttatatatttttata
aaccTGTTCAACACTACTGATGGACTTCAATGTCAGGATATTGAAAATGA
TGTCCAAATCAACGAAGAAATAACCAGTGGACGTGTCAAGGGTTTATATt
ctggtttttataaagacaTTCCAGTGGTTTTAAGTTATCCTGCAGATTTG
GAAATGAGAGATGACTTCAAGCATGGTTTACAAATGCTGATTGATTTTCA
AGAGAGTGGTTTTGTAACAGAATTGGTTGGCTATTGTTTGgatataaaaa
atttaaaggtacataATATGATTCCTAAAATGTTGGTTTGTCTAATTATT
CAGGTcAActtcagattcacattttcattttaaacgaaaattttagatga
attgttttgattacttcttgttttaaaagatttttaagtttttaatttca
aatagtACATTTGGGTTAAACTATGCAGGTTACATTAAAAAATCACACTT
AACTGAGTCTAGCGGAGTTAAAAGGTTTCTTTTAATCAAAGTTATAACTA
tttttttCTCTACAGATGGTGACGAAATATTATAAGCATGGTTCACTCGT
AAATCTTGACAAGATTCTTGAAGAATTCACTTCAGAGGAAGCGTGGAATA
AGAGACTCCAACTGGCTGTCGATTATTTATCCATTATAGAATTTCTACAT
GAGAAGTCTAGAGTCATGTGTGATAGTAGTGATTTGACAAAAACACTTAG
TCAATATCTAATCACTGACGATTTTCGATTAGTTGTGAATGATCTAGACG
CTTTACCGAGTGTATTAAATAATCAAATGATCAAGTGTGGACATAGACAA
TTATTTGGTGAGTTTGTAGCACCAGAACAACTGTGGCCTCACGATGATCG
ACCTTTTTTGGACGAGGAAATGATTGGTTATGATGAAAAGACTGACATTT
GGAAGATGCCAAAcgtgttgttgtttttattagGACGTTCTGCGTTAGCG
ACACGGACTAAAGTGTTGCTTTTTGAATTATTCGGACAGTGTAAGAATAT
CGAGCCGGCTAAAAGACCCTCGGCTAAAGAAGTGAAACAGAAACTTAAAG
ATGTTTTAGAAGGTATTAGATTGAAAATAGAGCTTTGAGATATGTACTAC
TTAAATTTGCATTGATTGTAAGAAGGAATAGTGgcgggaatttattttgg
cggatTACATATTACAtattttaagtcaataaaatacTTCTTTAATTAAT
TAAGAACAAACCCGGTTAAGGTGGGAGTTTTATTTGGGGGAGTTTGgtca
aatctgcaaaattttctttccgtg

Coding sequence (CDS) from alignment at sc0000113_pilon:440776..444899+

>MSTRG.13878.1.p1 ID=MSTRG.13878.1.p1|Name=MSTRG.13878.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1770bp|location=Sequence derived from alignment at sc0000113_pilon:440776..444899+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCATGTGTTCAGAAATGGCTAAATTTAATACtggttttatatatttt
tataaaccTGTTCAACACTACTGATGGACTTCAATGTCAGGATATTGAAA
ATGATGTCCAAATCAACGAAGAAATAACCAGTGGACGTGTCAAGGGTTTA
TATtctggtttttataaagacaTTCCAGTGGTTTTAAGTTATCCTGCAGA
TTTGGAAATGAGAGATGACTTCAAGCATGGTTTACAAATGCTGATTGATT
TTCAAGAGAGTGGTTTTGTAACAGAATTGGTTGGCTATTGTTTGgatata
aaaaatttaaagATGGTGACGAAATATTATAAGCATGGTTCACTCGTAAA
TCTTGACAAGATTCTTGAAGAATTCACTTCAGAGGAAGCGTGGAATAAGA
GACTCCAACTGGCTGTCGATTATTTATCCATTATAGAATTTCTACATGAG
AAGTCTAGAGTCATGTGTGATAGTAGTGATTTGACAAAAACACTTAGTCA
ATATCTAATCACTGACGATTTTCGATTAGTTGTGAATGATCTAGACGCTT
TACCGAGTGTATTAAATAATCAAATGATCAAGTGTGGACATAGACAATTA
TTTGGTGAGTTTGTAGCACCAGAACAACTGTGGCCTCACGATGATCGACC
TTTTTTGGACGAGGAAATGATTGGTTATGATGAAAAGACTGACATTTGGA
AGATGCCAAAcgtgttgttgtttttattagGACGTTCTGCGTTAGCGACA
CGGACTAAAGTGTTGCTTTTTGAATTATTCGGACAGTGTAAGAATATCGA
GCCGGCTAAAAGACCCTCGGCTAAAGAAGTGAAACAGAAACTTAAAGATG
TTTTAGAAGGTATTAGATTGAAAATAGAGCTTTGAATGGCATGTGTTCAG
AAATGGCTAAATTTAATACtggttttatatatttttataaaccTGTTCAA
CACTACTGATGGACTTCAATGTCAGGATATTGAAAATGATGTCCAAATCA
ACGAAGAAATAACCAGTGGACGTGTCAAGGGTTTATATtctggtttttat
aaagacaTTCCAGTGGTTTTAAGTTATCCTGCAGATTTGGAAATGAGAGA
TGACTTCAAGCATGGTTTACAAATGCTGATTGATTTTCAAGAGAGTGGTT
TTGTAACAGAATTGGTTGGCTATTGTTTGgatataaaaaatttaaagATG
GTGACGAAATATTATAAGCATGGTTCACTCGTAAATCTTGACAAGATTCT
TGAAGAATTCACTTCAGAGGAAGCGTGGAATAAGAGACTCCAACTGGCTG
TCGATTATTTATCCATTATAGAATTTCTACATGAGAAGTCTAGAGTCATG
TGTGATAGTAGTGATTTGACAAAAACACTTAGTCAATATCTAATCACTGA
CGATTTTCGATTAGTTGTGAATGATCTAGACGCTTTACCGAGTGTATTAA
ATAATCAAATGATCAAGTGTGGACATAGACAATTATTTGGTGAGTTTGTA
GCACCAGAACAACTGTGGCCTCACGATGATCGACCTTTTTTGGACGAGGA
AATGATTGGTTATGATGAAAAGACTGACATTTGGAAGATGCCAAAcgtgt
tgttgtttttattagGACGTTCTGCGTTAGCGACACGGACTAAAGTGTTG
CTTTTTGAATTATTCGGACAGTGTAAGAATATCGAGCCGGCTAAAAGACC
CTCGGCTAAAGAAGTGAAACAGAAACTTAAAGATGTTTTAGAAGGTATTA
GATTGAAAATAGAGCTTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13878MSTRG.13878Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13878.1.p1MSTRG.13878.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13878.1.p1.exon1MSTRG.13878.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13878.1.p1.exon2MSTRG.13878.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13878.1.p1.exon3MSTRG.13878.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13878.1.p1.exon4MSTRG.13878.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000113_pilongenomesc0000113_pilon:440776..444899 +