MSTRG.13852.1.p1 (mRNA) -

Overview
NameMSTRG.13852.1.p1
Unique NameMSTRG.13852.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000113_pilon:124100..128058-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13852.1.p1 ID=MSTRG.13852.1.p1|Name=MSTRG.13852.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3959bp|location=Sequence derived from alignment at sc0000113_pilon:124100..128058- (Clytia hemisphaerica_ch_hm2_pilon)
TTAAAATTAACAATTTTCAAAGTTATCTTGTTTTAGGTAAACAGATTCAA
AAGATTTCATAGATTTTCATTGGTTGGATATACAAGTTTCTTGAAGAAAT
GTGGTGTTGTGCTATCTTGGCATTGGTGTCTACTGTTTTGATAAAAGGTG
AGATAATACTGTAATCATTGACCTTTATAGGTCAGAGGACTGGATTGGGC
AAAGTTTCTCGATCCCGGCTAAGAAAAATCTTTGATCGGAGTTTTTTTGA
AAGAAGTATCCTTTAGGTATACTACCCATAATGGGTGAAATAATTTATGA
ACGGAAAATTTGATTGAATTATGAATTGACCCACGTCGAATAGTTCTACC
AATAGGGTACCAATTAAAAAAAACTATGATCAAGGATATAGCTTGGTCTA
AGGTAGTGAATAATAATGTCACACGGTAAGGTTTGTTTCATTCTTAATAT
CAAACTATGAGCTATTCTATTGGTTCAGACTGACGTTTGTATAAAAATGA
GTCAAAACTTGTGCTCGTTAAATGTGAAAATGTGCTCAAAGTGTTCTTCC
AAATCAATGGAGTTTTGACATTCTCAGATTCTGTTGCCAGATTCCACGAT
GGTGATATTCTGAGCATAGTCTTAATTTTTTAGACAGATTCATCATGAAT
GTTCTTTTAGAGTGTATTATTGTAATAAAAAGGCGTGTATCGAATTATCT
GCAAAAAAGGCTTGAATGACATTAGGGAAAGAACTAACGAGGAAAAAATA
TAAAGATAACACCACCTTTTTCCAGGTAATGATGGAATTCAACCTACTTA
TCTATCGCTATCTATCAACAATCATCTCGATCGAAGTATCACCATCAAAG
CCAAATATGGTGAAATAAAACCAAAAACTATCCAGCCTTCTGACAAACAG
ACTCTTGTTGATTATAAAGACATCAAAATACGCGAAATCGCCTTCGAAGC
TTTTGATATGATGACTGGAGTTCCATTAGCCTTGAATGGGGACCGCATAC
TGAAATTGAAAACAAGCTTTGAACGTTACAAGGTGCATATCGTCGATGTC
AAACCTTTAGGTAAACTACGCAACCTCTTTTACGCTCCTATCAAAACACT
GGAGCTTCGGATTTTTCTATTTTTCCCTAAACAGAAACAAGGTTCAATTG
AAACTTTCCAACTTGAAAACATTGGAAGCATGGATTGGTATCATTTAAAT
TGTTGTTAAAAGAAACAACTGATCTTCTTCTCGTCATACATATTAGTTAG
GAAACAAAGAGAATCTGATCAAAATGTTAGAACATTGAATATAATGAATC
AACGGATCCTGCACTAATGTACTTCCCAGTTTTCTCACCGGCAAGCGAGA
GGTCGTGGGTTCAATTCCCACTCGATTCTTTGAGAAAACTGTGAAGTACA
TTAGTGCAGGATCCGTTGATTCATTACCTATAAGTAATACGCACTTGATT
TCACATATTGAATATAATATTGTGTTAAACCTTTTTAAAGGTTTTATTTT
TACATAAGTGTTTCCGTTTCATATCAGACACATATTTTCATATCAGGACA
GTGTCTACCTATTGTTATATGATGCTGATATATAAGCAAAAAATTGTTTT
CTGTTTCCTCTTTCTGACCAGTCTTGCTCCATATATGTGTCGATCCAATG
CGAAAAAGCTTGTGAATTTAAATTGATGAGCAAGGAAACGATATCACTCT
TATTTAAAAACAAAACCTTTAAATCCTGTACTTGTTTAATTTTACAAGTG
ATAAATTAATGCGTTATCTGTTCAACACTTTGGCCAAACAAAAATATCCT
CTAGATTTCACCAATATGTTTTCTTTTTCAGCCTTGGATTACATGCCATC
CTATCTATACACCTTCAAAAACAATGAATTGACTGGTTACCCGTTTTTAA
ATCCGGTCGGGAACACCACTCCCACAATCGGTAATTTAGGAATCGATTTA
TCAAAAACGGAATTAGTTGGTGAAATAAGAGGTTGTTTTTTGAAGCCAGA
CGATTGTACAAATGGAACGACCATTGGTGTCAAACTGAAATTCGAAAACA
TATCAACTGATAACTCACAGAGACCAAAAATTCAATATATTTTACGTTCT
CATGGGATTGAACTTATCAAAGATCAGTATAAAAGGCTTTGTGGGTTGGT
TCGATCACATTATCCGAGCAGGGAATGGAAGGTAAGCTTTAAAGAGAGAG
GGCACCAATCAACACTACCGTAAGTTGGTCTAATGTCGACACCCCTCTTC
TAATTTCGACACCTTTCTTTGGAAATAGGAATAATGGGAAGGTCGGAATA
ACTGATTGAAACTATTTTTCTTTGGTTAGCGATTAGAAGAGAGGAACAAA
TCTTTAGTCTATCAGTAGTTGTGACCTTCCTATCTTTAAAGAAGGGTGTC
GAAATTAGAAAAAGGGTGTCAATATTAGACCAACTTACGATATATGCCTA
AAAGTGATTAGGTCTAGTTTTCCAGAGTGGAATGACGTCCAGAAATAGAT
AAACCTAAAAAGGATTAATCCCAGGAAGGAACGAAGTCAAAACAAAGTTT
TGTAAAGACATTGTATGGGCTAGTTCGATCACATGATCAAGTTCTCCATC
AAAAGCCAAAGTGTTTTCTGTAACTTTTTTGTAAGAGAATGGATGGGTAG
TGACTACTTTAAACTTTTTGTACATTATTCTTTCACATTCTGTCCAACCA
CTTTTTCATAGAGTTCATCCAATATCGTTTTTCCCACAAGCCTAAAATTA
TACATTCTTTCCTTCAAGGTTTGTTTCAGAGGCGTCCCTACGTCCATTTG
GATTTATCTTACACTAGCCTGGCACCCTAGACGTGGCATCAAAATGTACA
TCAATTCGAGGCTTGTCAAAACTAATAGATATGGTCGAACAATCAATCAA
AGATTATCCATTCAAAAAACATTAAGACTAGGTGATGGTCATCCTGATTG
CAGATTAGCCTCACTGTCACTGGTAAACAAACAGTTAGATGAATCACAGG
CTGGTCTTTTGATGTTATTCTTCTGGAAAGGTAAATTCCCTTTAGCAATT
TAGTCTCGCGGGTTACATTTATTCGACCACCCACACAATTCAAAATTGAT
TAGTTTCGTTATTTCGTTTAAATTTAAAGTGACTTTGCTTTATGTTCTCT
CGTACCCTTTCTCTTAGTCTGCTTTTTTATGATTTTCATTGCTTACGAAA
GGCATTATCATGTTCATTATCAAAATCAAAAAGTGTGTCAGCTGCTATGG
GTACAATGGGCTTTTCCAGAAAAAATTTTACCCCCACTGTTGAGGATATT
GATTTTTGGAAGTATCGAACTCCCTAGATATCCTACTTCCTGGATATGAG
TTATAAAGATGCTTACCCCTGGATATCATATTTTTTACTTGAAAAGACAC
TTTACCCCCTGGATATCCACTCCCTTGTAGCTATTTAACCCCCTGGTTAT
TCACTTTTGAACAAAAATCGTTAATCCCCTGGATATCCGATATCCTCAAC
AGGGGGGCACTGACTATTTCTGGAAAAGCCCAATATTACTACTTCTTTCT
TCATACAAAGGTTACAAAAACGATGCCTCGTATTTTTACTGATTTTTTGT
GCTTTATTTCATTATTTCAGGTGATCATCAACTCTTTTGGACACATGTTG
AATTTTACAACTTTGCTTTACTCAATGCTGATGTCAGTATGAATGGAAAA
CATAAATATCGAATGCGACCGAACACTTTCGTAACCATTACCTCAAAAAA
CCTGATCGAAGATGGACACTCGACTGCTATTGTTGTCCGCGCGATTGTAG
CAAATGGAAAACAACTCTATGTAAACAGGAGATTGAATTCATTGAAATTT
ATAATGAAAGACTCAGTGTTAAATCATCATCAAATACTGATAACTCATAA
ACTTTATAAAGTAATCAACCTATGAAAGATCGTTACTAAAAGGAATATTT
CACTCTTTT

Coding sequence (CDS) from alignment at sc0000113_pilon:124100..128058-

>MSTRG.13852.1.p1 ID=MSTRG.13852.1.p1|Name=MSTRG.13852.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6255bp|location=Sequence derived from alignment at sc0000113_pilon:124100..128058- (Clytia hemisphaerica_ch_hm2_pilon)
GTGATCATCAACTCTTTTGGACACATGTTGAATTTTACAACTTTGCTTTA
CTCAATGCTGATGTCAGTATGAATGGAAAACATAAATATCGAATGCGACC
GAACACTTTCGTAACCATTACCTCAAAAAACCTGATCGAAGATGGACACT
CGACTGCTATTGTTGTCCGCGCGATTGTAGCAAATGGAAAACAACTCTAT
GTAAACAGGAGATTGAATTCATTGAAATTTATAATGAAAGACTCAGTGTT
AAATCATCATCAAATACTGATAACTCATAAACTTTATAAAGTAATCAACC
TATGAGTTTGTTTCAGAGGCGTCCCTACGTCCATTTGGATTTATCTTACA
CTAGCCTGGCACCCTAGACGTGGCATCAAAATGTACATCAATTCGAGGCT
TGTCAAAACTAATAGATATGGTCGAACAATCAATCAAAGATTATCCATTC
AAAAAACATTAAGACTAGGTGATGGTCATCCTGATTGCAGATTAGCCTCA
CTGTCACTGGTAAACAAACAGTTAGATGAATCACAGGCTGGTCTTTTGAT
GTTATTCTTCTGGAAAGCCTTGGATTACATGCCATCCTATCTATACACCT
TCAAAAACAATGAATTGACTGGTTACCCGTTTTTAAATCCGGTCGGGAAC
ACCACTCCCACAATCGGTAATTTAGGAATCGATTTATCAAAAACGGAATT
AGTTGGTGAAATAAGAGGTTGTTTTTTGAAGCCAGACGATTGTACAAATG
GAACGACCATTGGTGTCAAACTGAAATTCGAAAACATATCAACTGATAAC
TCACAGAGACCAAAAATTCAATATATTTTACGTTCTCATGGGATTGAACT
TATCAAAGATCAGTATAAAAGGCTTTGTGGGTTGGTTCGATCACATTATC
CGAGCAGGGAATGGAAGGTAATGATGGAATTCAACCTACTTATCTATCGC
TATCTATCAACAATCATCTCGATCGAAGTATCACCATCAAAGCCAAATAT
GGTGAAATAAAACCAAAAACTATCCAGCCTTCTGACAAACAGACTCTTGT
TGATTATAAAGACATCAAAATACGCGAAATCGCCTTCGAAGCTTTTGATA
TGATGACTGGAGTTCCATTAGCCTTGAATGGGGACCGCATACTGAAATTG
AAAACAAGCTTTGAACGTTACAAGGTGCATATCGTCGATGTCAAACCTTT
AGATGTGGTGTTGTGCTATCTTGGCATTGGTGTCTACTGTTTTGATAAAA
GGTGATCATCAACTCTTTTGGACACATGTTGAATTTTACAACTTTGCTTT
ACTCAATGCTGATGTCAGTATGAATGGAAAACATAAATATCGAATGCGAC
CGAACACTTTCGTAACCATTACCTCAAAAAACCTGATCGAAGATGGACAC
TCGACTGCTATTGTTGTCCGCGCGATTGTAGCAAATGGAAAACAACTCTA
TGTAAACAGGAGATTGAATTCATTGAAATTTATAATGAAAGACTCAGTGT
TAAATCATCATCAAATACTGATAACTCATAAACTTTATAAAGTAATCAAC
CTATGAGTTTGTTTCAGAGGCGTCCCTACGTCCATTTGGATTTATCTTAC
ACTAGCCTGGCACCCTAGACGTGGCATCAAAATGTACATCAATTCGAGGC
TTGTCAAAACTAATAGATATGGTCGAACAATCAATCAAAGATTATCCATT
CAAAAAACATTAAGACTAGGTGATGGTCATCCTGATTGCAGATTAGCCTC
ACTGTCACTGGTAAACAAACAGTTAGATGAATCACAGGCTGGTCTTTTGA
TGTTATTCTTCTGGAAAGCCTTGGATTACATGCCATCCTATCTATACACC
TTCAAAAACAATGAATTGACTGGTTACCCGTTTTTAAATCCGGTCGGGAA
CACCACTCCCACAATCGGTAATTTAGGAATCGATTTATCAAAAACGGAAT
TAGTTGGTGAAATAAGAGGTTGTTTTTTGAAGCCAGACGATTGTACAAAT
GGAACGACCATTGGTGTCAAACTGAAATTCGAAAACATATCAACTGATAA
CTCACAGAGACCAAAAATTCAATATATTTTACGTTCTCATGGGATTGAAC
TTATCAAAGATCAGTATAAAAGGCTTTGTGGGTTGGTTCGATCACATTAT
CCGAGCAGGGAATGGAAGGTAATGATGGAATTCAACCTACTTATCTATCG
CTATCTATCAACAATCATCTCGATCGAAGTATCACCATCAAAGCCAAATA
TGGTGAAATAAAACCAAAAACTATCCAGCCTTCTGACAAACAGACTCTTG
TTGATTATAAAGACATCAAAATACGCGAAATCGCCTTCGAAGCTTTTGAT
ATGATGACTGGAGTTCCATTAGCCTTGAATGGGGACCGCATACTGAAATT
GAAAACAAGCTTTGAACGTTACAAGGTGCATATCGTCGATGTCAAACCTT
TAGATGTGGTGTTGTGCTATCTTGGCATTGGTGTCTACTGTTTTGATAAA
AGGTGATCATCAACTCTTTTGGACACATGTTGAATTTTACAACTTTGCTT
TACTCAATGCTGATGTCAGTATGAATGGAAAACATAAATATCGAATGCGA
CCGAACACTTTCGTAACCATTACCTCAAAAAACCTGATCGAAGATGGACA
CTCGACTGCTATTGTTGTCCGCGCGATTGTAGCAAATGGAAAACAACTCT
ATGTAAACAGGAGATTGAATTCATTGAAATTTATAATGAAAGACTCAGTG
TTAAATCATCATCAAATACTGATAACTCATAAACTTTATAAAGTAATCAA
CCTATGAGTTTGTTTCAGAGGCGTCCCTACGTCCATTTGGATTTATCTTA
CACTAGCCTGGCACCCTAGACGTGGCATCAAAATGTACATCAATTCGAGG
CTTGTCAAAACTAATAGATATGGTCGAACAATCAATCAAAGATTATCCAT
TCAAAAAACATTAAGACTAGGTGATGGTCATCCTGATTGCAGATTAGCCT
CACTGTCACTGGTAAACAAACAGTTAGATGAATCACAGGCTGGTCTTTTG
ATGTTATTCTTCTGGAAAGCCTTGGATTACATGCCATCCTATCTATACAC
CTTCAAAAACAATGAATTGACTGGTTACCCGTTTTTAAATCCGGTCGGGA
ACACCACTCCCACAATCGGTAATTTAGGAATCGATTTATCAAAAACGGAA
TTAGTTGGTGAAATAAGAGGTTGTTTTTTGAAGCCAGACGATTGTACAAA
TGGAACGACCATTGGTGTCAAACTGAAATTCGAAAACATATCAACTGATA
ACTCACAGAGACCAAAAATTCAATATATTTTACGTTCTCATGGGATTGAA
CTTATCAAAGATCAGTATAAAAGGCTTTGTGGGTTGGTTCGATCACATTA
TCCGAGCAGGGAATGGAAGGTAATGATGGAATTCAACCTACTTATCTATC
GCTATCTATCAACAATCATCTCGATCGAAGTATCACCATCAAAGCCAAAT
ATGGTGAAATAAAACCAAAAACTATCCAGCCTTCTGACAAACAGACTCTT
GTTGATTATAAAGACATCAAAATACGCGAAATCGCCTTCGAAGCTTTTGA
TATGATGACTGGAGTTCCATTAGCCTTGAATGGGGACCGCATACTGAAAT
TGAAAACAAGCTTTGAACGTTACAAGGTGCATATCGTCGATGTCAAACCT
TTAGATGTGGTGTTGTGCTATCTTGGCATTGGTGTCTACTGTTTTGATAA
AAGGTGATCATCAACTCTTTTGGACACATGTTGAATTTTACAACTTTGCT
TTACTCAATGCTGATGTCAGTATGAATGGAAAACATAAATATCGAATGCG
ACCGAACACTTTCGTAACCATTACCTCAAAAAACCTGATCGAAGATGGAC
ACTCGACTGCTATTGTTGTCCGCGCGATTGTAGCAAATGGAAAACAACTC
TATGTAAACAGGAGATTGAATTCATTGAAATTTATAATGAAAGACTCAGT
GTTAAATCATCATCAAATACTGATAACTCATAAACTTTATAAAGTAATCA
ACCTATGAGTTTGTTTCAGAGGCGTCCCTACGTCCATTTGGATTTATCTT
ACACTAGCCTGGCACCCTAGACGTGGCATCAAAATGTACATCAATTCGAG
GCTTGTCAAAACTAATAGATATGGTCGAACAATCAATCAAAGATTATCCA
TTCAAAAAACATTAAGACTAGGTGATGGTCATCCTGATTGCAGATTAGCC
TCACTGTCACTGGTAAACAAACAGTTAGATGAATCACAGGCTGGTCTTTT
GATGTTATTCTTCTGGAAAGCCTTGGATTACATGCCATCCTATCTATACA
CCTTCAAAAACAATGAATTGACTGGTTACCCGTTTTTAAATCCGGTCGGG
AACACCACTCCCACAATCGGTAATTTAGGAATCGATTTATCAAAAACGGA
ATTAGTTGGTGAAATAAGAGGTTGTTTTTTGAAGCCAGACGATTGTACAA
ATGGAACGACCATTGGTGTCAAACTGAAATTCGAAAACATATCAACTGAT
AACTCACAGAGACCAAAAATTCAATATATTTTACGTTCTCATGGGATTGA
ACTTATCAAAGATCAGTATAAAAGGCTTTGTGGGTTGGTTCGATCACATT
ATCCGAGCAGGGAATGGAAGGTAATGATGGAATTCAACCTACTTATCTAT
CGCTATCTATCAACAATCATCTCGATCGAAGTATCACCATCAAAGCCAAA
TATGGTGAAATAAAACCAAAAACTATCCAGCCTTCTGACAAACAGACTCT
TGTTGATTATAAAGACATCAAAATACGCGAAATCGCCTTCGAAGCTTTTG
ATATGATGACTGGAGTTCCATTAGCCTTGAATGGGGACCGCATACTGAAA
TTGAAAACAAGCTTTGAACGTTACAAGGTGCATATCGTCGATGTCAAACC
TTTAGATGTGGTGTTGTGCTATCTTGGCATTGGTGTCTACTGTTTTGATA
AAAGGTGATCATCAACTCTTTTGGACACATGTTGAATTTTACAACTTTGC
TTTACTCAATGCTGATGTCAGTATGAATGGAAAACATAAATATCGAATGC
GACCGAACACTTTCGTAACCATTACCTCAAAAAACCTGATCGAAGATGGA
CACTCGACTGCTATTGTTGTCCGCGCGATTGTAGCAAATGGAAAACAACT
CTATGTAAACAGGAGATTGAATTCATTGAAATTTATAATGAAAGACTCAG
TGTTAAATCATCATCAAATACTGATAACTCATAAACTTTATAAAGTAATC
AACCTATGAGTTTGTTTCAGAGGCGTCCCTACGTCCATTTGGATTTATCT
TACACTAGCCTGGCACCCTAGACGTGGCATCAAAATGTACATCAATTCGA
GGCTTGTCAAAACTAATAGATATGGTCGAACAATCAATCAAAGATTATCC
ATTCAAAAAACATTAAGACTAGGTGATGGTCATCCTGATTGCAGATTAGC
CTCACTGTCACTGGTAAACAAACAGTTAGATGAATCACAGGCTGGTCTTT
TGATGTTATTCTTCTGGAAAGCCTTGGATTACATGCCATCCTATCTATAC
ACCTTCAAAAACAATGAATTGACTGGTTACCCGTTTTTAAATCCGGTCGG
GAACACCACTCCCACAATCGGTAATTTAGGAATCGATTTATCAAAAACGG
AATTAGTTGGTGAAATAAGAGGTTGTTTTTTGAAGCCAGACGATTGTACA
AATGGAACGACCATTGGTGTCAAACTGAAATTCGAAAACATATCAACTGA
TAACTCACAGAGACCAAAAATTCAATATATTTTACGTTCTCATGGGATTG
AACTTATCAAAGATCAGTATAAAAGGCTTTGTGGGTTGGTTCGATCACAT
TATCCGAGCAGGGAATGGAAGGTAATGATGGAATTCAACCTACTTATCTA
TCGCTATCTATCAACAATCATCTCGATCGAAGTATCACCATCAAAGCCAA
ATATGGTGAAATAAAACCAAAAACTATCCAGCCTTCTGACAAACAGACTC
TTGTTGATTATAAAGACATCAAAATACGCGAAATCGCCTTCGAAGCTTTT
GATATGATGACTGGAGTTCCATTAGCCTTGAATGGGGACCGCATACTGAA
ATTGAAAACAAGCTTTGAACGTTACAAGGTGCATATCGTCGATGTCAAAC
CTTTAGATGTGGTGTTGTGCTATCTTGGCATTGGTGTCTACTGTTTTGAT
AAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13852MSTRG.13852Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13852.1.p1MSTRG.13852.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13852.1.p1.exon5MSTRG.13852.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13852.1.p1.exon4MSTRG.13852.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13852.1.p1.exon3MSTRG.13852.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13852.1.p1.exon2MSTRG.13852.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13852.1.p1.exon1MSTRG.13852.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000113_pilongenomesc0000113_pilon:124100..128058 -