MSTRG.13843.3.p1 (mRNA) -

Overview
NameMSTRG.13843.3.p1
Unique NameMSTRG.13843.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000112_pilon:1065034..1073802+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13843.3.p1 ID=MSTRG.13843.3.p1|Name=MSTRG.13843.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8769bp|location=Sequence derived from alignment at sc0000112_pilon:1065034..1073802+ (Clytia hemisphaerica_ch_hm2_pilon)
AGatcttgaaaaattaagaaaaatggGAGAAGCAAGGGATGAATGTACAA
TATGTTTATTTGATGTTGATGGTACATTAACCATGCCAAGACAGGTAATc
cttttcaattgaaaaaatattatgtaatttttttttaaagattgtcaTTG
TCTCCAAATCATGTTATTTTGTATATGAAATTTTCTTGAATTGAATTTAG
GTCATTACATCAGATATGGAGGATTTTATAAAAGAGCTTCAAAAGAAAGT
GTTGGTTGGTATAGTGGGTGGTTCTGATCTCAAGAAAATTAAAGAACAAA
TGGCTGGAGAACATTGTAAGAATTGCTATGTAATTCaatttctcttttat
ttgagaCATAGCAGACAGTATTTCagtattcaaaaacttttcttccAACT
GTTCCACATAATATTGtaatagttgtttgggagaatgtgacagtcttttg
attaactaattactccagcatAAATTTTGTTAATAATAACATCatataat
tgatttgtcttttacgaATCAGCTGTTACTTAGGGACAAAATAATTTATC
TCGTTTGTACTGGCTGAGGAAAAGTAATGTATGCTTgagtaccttaagtg
gataaattttggcatagatttaatttggcgattggccaaaatacgatttt
tggtggggatttaatttggcgatagatcaatttcttaaaatttggagGGG
ATtcaatttggcgaattgccgaatttggaaattttggcgagcaaAATTCG
GCAAAtttaattcccgccaaaatttatccacttaaggtaatttgTTTATA
GACCGTTGCATTCTCCTAAATAACTATTCAATTGCATGAAtttttttCGT
AAGcagttcttaaaaaaatctgtcaaattttataaaagaagcTTTCGTTA
ACTCTGGAATAATGAGATAATgactatttaaaattttcaataatatatTC
AGAACTCTAATGATCTTCTGGGAACCAGAATTCATCATAATACTCAATAT
CAATCATCATAGTGAATATGGCTTTTAGGAATAACAACTTGCACAGCTCA
GGGTCATCCGTATAGTACTCTtgggtgccaaataaacGgggggggggttg
gaaaattttcgaaattttaataaattggctaattgccAgggggttggaaa
tcgtacttctgaaaccccaaaaataaggtaaatataggctaaaatcagac
TATTAAGAgtaaaataaggggccttctctttgacagctgagaatattctt
aaaaattaattctAAACCCTCTTTCCCACCTTCACTGCATTCATACTATA
TGGATGACCCCCTTAGGAAATAACTTATCTATTTTTTCTAGGTATAAAGA
TATTTGATTATGTGTTTGCAGAAAATGGATTAGTAGCTTACAAAAATGGT
GAACTACTTGAAATACAGGTAATTCTAAAGAATTTCTAATAGAAAACATG
GAAGATAACAGGCTTGTGTATATGGCATGCACCAAAATGCATAATAGAAT
GTAGATACAGTATAGGAAATGACTGGTTATTaactaatttctcaaaatag
ctaaacatttgattttattaaattaatgatttataaaaactactttctat
AACGCTGATCACATGTTCATGCAGACAAAATTTTGGACCTGTAACCCCTG
GATTCTGGGGGGATGaggattttccgattttttaaaaaaggtgGAGGTTG
GGTTGATGAgagatttcaggtgggggtaaccctatgtagggTGAGTGACG
TTTTTCAGGTAGGGGGTTGGAGGTGTGCTGCCCACTATGTATAATAAGTT
ACACAAGTGCAAAGAAATATTGTTGATATTACTCATGTGTCATTTACCTT
TGGAAAGATAAAGGAAATTAAATCATTTGAGTAGGGATTTGAAATTGAAC
GCATTATATAGGCTTGAAAAAAGTTGTTATTAATCTCAAAGGGCAATCCT
AGGGCAATATCATCaatgttcaaaaaaattatgCCCCAtttttttATCAC
TAGTCAttgctttcactaaatgcccccacataaagatcatgtcaagcACT
TATGAAGCTTTAATGcattaaagattaaaacattaataaaaaataatcag
gaataattgattgatttaattattgattgattggttgattgattgattga
ttgattgaggcatttgtttgaagaaaaaaattatattccattaacaaaat
acttgaagaatttgcagcttgataatttaataaaatttaaggaaaagctg
gaaaagcttctcaaaaatatatttcaaaaattatggtatcattagcttac
aggttttcacatctcctgtttgtttttttctcctagtttctttcttacaa
caatatatatcgtgattattattcactaaatagaccttttttataatgcc
gcagacatcttagattgtaggcaaaatatatggtggtgaataaatcaaca
aggtaaccaatcagaaatagcttgtttttttcattgcctgctatatttca
acaattctctattgcaactttgcctaataaacaatagtcaagaggatact
gcgtatgaaatttatcaaaaagttctgcaccatcttaaatagggtgaaat
agaaaccaatcctagttaaggcccggcctccacttgcgtacgctgtgatt
gcactattctcaaacaaaatcttctattttattggtcaaaagaaaaataa
aggaatgccattgtggtccattcagacgtacagtcgagaaaagttgaaat
gcgcctaatttttttttcaagtgcatgcatagtactttttcatgatgcaa
tcttttctccaagcagcgcagacaatgaagagatgtgccttcaggaagct
agactttttgagtttatagctatatatactttcGCTTTAttgtgtttctg
tatgactgtctgtgtacctagtctaaccagtGTTAAATGCCTTCGAGAAG
Gtccatcctaacttggaaagccagaattggagctatttcaccaaaccact
ggagcgtaagttatttaggctatcacaactgcatgaaaaagttgaatgtg
cgcatgTAATTAAAGTTAAacgaaaatgtaaacaaactttttgcaggttt
ttgaaatagatttaccacactgaaaaaacagtgaaaaaactctatgtgag
gtaaatctattttgaagaccaaaagaaaaagtttgtttacattgattgac
attcaacattcattcaaccacttttggattcaacttatTATATATGCGTA
catcattcaacttttttgtactttgccggtatcttgttttactaagttaa
gaaggactttctcgagttacgaccatatgatggtatttaaagctcaagaa
gctctataaacaataaaggtagttattgataaaataaaagacaaagataC
CGTAATTAGAgttaacaaaaatatcaaatatacatatgaaaacttgagca
aaaaaaacaaatttcttttccggaaaaaagaattgaaatcattgctgaag
tgaacttctgactaaattacagtagttagtattcagtttcaaagacaaga
aacaaaatttgacatacaaaaaactttttccagtcaatgaatcagctcat
catcatcataaccagtctgctattttgtttgttttgatttgcacaagtaa
tattgtaattcgtgttatatcatacactgttatgatttgcatttataaca
ctcgcttcagtttttcaaagctaaatcaaaactaaaattgtaatatgtaa
taatggtaataacATATAACGTTTttccgtcccggaaaaaaaccgagcAT
TTACGGAaaagactaactacggggatgcttgggcgacaaaacgcaacaaa
atttcaagattccagtccaatatctatgcgtgaaactatgagtgcctcct
cgtcgctacgctcctgcgggggcaataattccatttaatctttttttttc
tacttgtAGAATTTCAGACTAAATAATGCTTAGAAAGAGCAAAAGATCTT
GTAAATGAATCGGTGTTCTCTTTTCGGTGTCTGATAAAAACGTGTAGact
gaggccccccagcggaccctcaattcacgcaatcacgcaattttttttca
aaattcacgcATACACGCAAATTTttctcgagtttcacgcaataacccaa
tttttcagtaaatcggaaaattttcgggaaaaatcggggaaacattggaa
aatcgggaacacTGCACACAATCAGTGGATAAAAGGGAAagttcacgtat
tcacgcacaaaatagcccagattcacacattcacgcagtcaaaaagtgga
ttttcacgttcacgcgagtttttttcaattcacgcattcacgcatttttt
tcttctcaattttcacgcattcacgcaaccgaaaatgcccattcacgcat
tcacgcaaaccgctgggggggcccctAGACTCTAGTCCTCTAGCCTACCT
CTTCTAAGTGATAGAGTATGAAAacagttggcagttaaaatctaaACTAG
AGCTTGTTCTTTTTGTTCATTTCAGAACCTCTCAAAGTATGTTGGTGACG
ATAAACTTCAAGAATTCATCAATTATTGTTTAGAATATATGTCAACATTG
AAAATACCACGAAAAAGGTAAAATTgcagcaaaaaaattttaaggtctat
acccagctgacacacaacgttgtttccaCGTTCATCTAaagttatatgga
tgttgtgaacgttagatgaacatcGAAACAGCGTTGTGTTTCAGCTGGGT
AATATCCTAAGGTCCATAAGAGAGTCGAAGAGAATACGTAGCTTCTCAAT
ATCAAGATACAATTAATCTTAGATATCGTAAGGCTgaagttgaatttgaa
atggAATTATATATAATTGCCAGTAAAATTTAAGGCAATATCATTAATGT
GTCTGCACAGTGGCCTGCGAATTAGTAAGATTATATTATTTAAAATCATA
CATAATATGCTTAACATTTTTAGGGGAACCTTTGTAGAATTTCGCAATGG
GATGTTGAATATTTGTCCTGTTGGTAGAAGTTGTAGTCAAGAAGAAAGAA
TTGAATTCAATAAATATGACCAGGTAATAcgaggaaaataaaagaatttt
atattaccgttagttgttttttttaggTGATTGATAGAAGAAAAGCTGCA
ATACCTCAAAATTTCATGATCAAAATTTAAGGTTTTTTCAGCATCAATAA
ATTTCAAAGGGAACCCCCTAGAGAAGGATGCTTTTTTCCATGGAATTGAA
TAGCCTGGTTAATCAAGCTCAAACTCGCTTTGCTAAGAAGTAACCTTGAG
TTATTGAGTTCTCAGAAATTCTCCAGCAAACCAGTATGATTGACATTCCA
TCTTTTCTTACTAGGAACACAATATACGTAAAAACTTCGTGGCAGCTTTG
GAAAAACGATTTCCTGATTCAGGGCTGAAATATTCAATTGGTGGACAAAT
CAGTTTCGATGTGTTCCCAAAGGGTTGGGATAAAACATACTGTTTACGTT
TCATTGATACAAGTAAAATCAAAACGATTCATTTCTTTGGCGATAAAACG
TGGGAGGTATGTGTTGTTTTAATACATTTGTTTTCAGCAATGTTCGATTC
TAAATCGTATAATTATTTAGGCTACgtctaggctgcacgcatccccagaa
tttattttgttataggggatgcgtatcgtgtatgaaattctcgtccgaga
gttacctcaaatttggggtaaccgaaagttgcataaatttacataatttt
gttACATCCAAtcacagaaagagaaaaatgacgtcattgtgctATTGCtt
tcataattataaattttcattcattaaacAAAGAGAAGTCGTTGTACAGC
TGTGacacataatcaaaaaagagaaaagaaaagacgggggtaagctGGGA
CAGGAATATCttagacgatacgcatcccctatatcaaatcatatcagagg
ggatgtgtgcagcctaggctacgtcatatcttcctccgttttgagcgtaa
aactcctactcaagagtaaggcctaaaagactggagctgtctattgtgta
gactaatgAttttatgtttatgtctcaggaaaaacagttttttaaaaagt
tttgaaacttttcgttttgttGAAGGAGAATTCCACGatcctgaaaaatt
tttttagtaaCGTTTAACGTAAACGTACCACGTGACAGCTGGAAAGAGac
ataaatattttgaattacAATTTATTTACGCCCTTTATGTTTCACTTTGA
TGACCCACACTTTAAGATACCTATATTAACTTTATCATATGATTCTGCTC
ATGTTTCAGGGTGGCAATGATTTCGAAATTTTCGCTGACAAACGTACGCT
AGGCCACACTGTCACAAGTCCAGAAGATACGAAAAAGCAGTTAACTGAAC
TCTTTTTCAAGTAGAAAATCTATTAATATATTCTCTAGTTGGtctattta
taagaatattagacctgttcttattttttttcgtgAGCTGCAATATTAGC
CATTTTAAAATGgcctggaattcccgagttatttttttccgagttatttt
gcaCGTGATGTCACAATTTCAGTTTTTATGAAGTCaccacaaaaataaaa
actcaaattttttaAGTTATTTGTTAATATATTTAACCCAAATCTGCCCC
ATTCAGGTAATAAGCCCATATAAATAAGtcgaatttttcataaatcgAAT
ACCTActataaaaatataatgtaAATAACTCGAGAACTTTGAGGCACGaa
aaaaaaccaagttaaaatttatcaaataactcgaaaagttaaaagcacga
aaaaaaacccgagttaaaaatgatgacgtcataatgacatcacaaaactg
aaattatgacgtcatatgcaaaataactcgggaaaatAGCTCGGGAATTC
CAGGCCCCTTCTAGTGATGCTCTTTATTGAAATTTATTGTAATTTGTTTG
GTCAAAATTTAGCCTCATGTTATACGTGTGCCTCTTTCCGCTAGTGTAAA
ACAGGGGTGTataacatagatttataaagcccgaagggctagatgtcggg
ctTTAAACCATGCATCGCAGGaaaaaaaGTGAAtgtcggaaaaaatattg
ttgctattgttttcgaaaacccgcgaaatcgctgaaattttattgcaatg
tcacgtgacttaggtaggatttcctacctaaccacggcacactttttagT
AAAAGtactccatctagcccttcgggctttataaatctatggtgtataaa
tcgaacaaatttgctTTCCCTTCGATTTTACGAGCTATAAAGAAAAGACT
AGCATTCAATTAGAACTTATCTCAGCCAGCACGTCCCAGTCTAAATTTGT
ATACTACATTGGTCTAACTACTGAAGACAATTTTAGTAACGAGACCTTTT
AGTTTTTGTTcctttcgaaaattttcgaaagattttagaTGTTATAGGCA
TTGTTAGTATATCAAAGATTTAGCCAAGATGATCTACAGGATATTCATTT
ACAAAGAGCTTATAGATAACCGTTTTGTTGTCATTTGTGATCTTATTCAT
AGATTAGGGTAGTTTTAtattaaattttcagtttgtgaACATTTTTTGTA
ATAGGTATACGTAGTCgaacaatagaatttgaaatttccttaaaaattat
tgtatttattttgtatgttatttttattttagtagttattatattttttc
caattatatCTTCAACTTGAATTTCACGTTTGTTGAATCTATGTATCATT
CCTGAGAAAATAAAAGAGATTGAAAGTTCTACAGaatattttggattttt
cttATGCTGGAATCATTATATTCTCAGCGTCGTTAAATGAGAAATAAAGT
AAATTAGTGTTAAAAATGTTAgctagaaaatatttacaaatagATTAGAC
GACAATCGCATAATTACAAATTACAGAAAAAAGTTTGTTGTCAAGATACA
TGAAGAACACAccacaatagacgatatcggatttagataaatgcaatgca
ttctggtttctaaggactctcaaaggaattataatagatcaattataata
gattataattcctttgagagtccctagtaaccagaatgcattgcatttat
ctaaatccgatatcgtctattggccACAGAATCCAAACAGATTCTGTTTG
GACTCTAGCTTGAGGCGTCTTTCAAACTACATTAAGTCCTACAAGAAATT
CTGGGAAATTTAACTATTAGACAGGCGATTTACATGAGAAAACTAGGTCC
TTGAAATACACAGCTTTCAATCATTACCTCCTGGAATTGCTTGTTTGCGT
CTGAGTTCATTTGCATTGAAAATCATCCTAATATAAACAACCCCAACCTT
CTGTTGACACCATGATTGATTTTTCTATGACAATATAAGTTCCTCAAAAG
ATTTTATAATCAATATCCCATTATCTTTCCCAATAAATCATCTTCGTTTG
CCACCTGAGGGTAGTTTCCTAATAGCAGCCCCAGCACCTGGTTTCTTTTT
AGAAGAATTTTCGGCGGGAGCTATACTATTTTCACGACTGAGAGCCATTT
CTAGGACAGAACTCCTTGAAGAATCAGGACGGTTACTGGGttcctcttcc
tcatcttcttcttcttcgtcaccttcctccccttcttcttcctgctcctc
actctcctcttcctcatcttcttcctcgtcttcatcttcctcttcatctt
cttcttcttcttcttcttctgtttcaggttttggaagttcattcttattt
ggcttctttttaggttcCT

Coding sequence (CDS) from alignment at sc0000112_pilon:1065034..1073802+

>MSTRG.13843.3.p1 ID=MSTRG.13843.3.p1|Name=MSTRG.13843.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1704bp|location=Sequence derived from alignment at sc0000112_pilon:1065034..1073802+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAACATTGAAAATACCACGAAAAAGGGGAACCTTTGTAGAATTTCG
CAATGGGATGTTGAATATTTGTCCTGTTGGTAGAAGTTGTAGTCAAGAAG
AAAGAATTGAATTCAATAAATATGACCAGGAACACAATATACGTAAAAAC
TTCGTGGCAGCTTTGGAAAAACGATTTCCTGATTCAGGGCTGAAATATTC
AATTGGTGGACAAATCAGTTTCGATGTGTTCCCAAAGGGTTGGGATAAAA
CATACTGTTTACGTTTCATTGATACAAGTAAAATCAAAACGATTCATTTC
TTTGGCGATAAAACGTGGGAGGGTGGCAATGATTTCGAAATTTTCGCTGA
CAAACGTACGCTAGGCCACACTGTCACAAGTCCAGAAGATACGAAAAAGC
AGTTAACTGAACTCTTTTTCAAGTAGATGTCAACATTGAAAATACCACGA
AAAAGGGGAACCTTTGTAGAATTTCGCAATGGGATGTTGAATATTTGTCC
TGTTGGTAGAAGTTGTAGTCAAGAAGAAAGAATTGAATTCAATAAATATG
ACCAGGAACACAATATACGTAAAAACTTCGTGGCAGCTTTGGAAAAACGA
TTTCCTGATTCAGGGCTGAAATATTCAATTGGTGGACAAATCAGTTTCGA
TGTGTTCCCAAAGGGTTGGGATAAAACATACTGTTTACGTTTCATTGATA
CAAGTAAAATCAAAACGATTCATTTCTTTGGCGATAAAACGTGGGAGGGT
GGCAATGATTTCGAAATTTTCGCTGACAAACGTACGCTAGGCCACACTGT
CACAAGTCCAGAAGATACGAAAAAGCAGTTAACTGAACTCTTTTTCAAGT
AGATGTCAACATTGAAAATACCACGAAAAAGGGGAACCTTTGTAGAATTT
CGCAATGGGATGTTGAATATTTGTCCTGTTGGTAGAAGTTGTAGTCAAGA
AGAAAGAATTGAATTCAATAAATATGACCAGGAACACAATATACGTAAAA
ACTTCGTGGCAGCTTTGGAAAAACGATTTCCTGATTCAGGGCTGAAATAT
TCAATTGGTGGACAAATCAGTTTCGATGTGTTCCCAAAGGGTTGGGATAA
AACATACTGTTTACGTTTCATTGATACAAGTAAAATCAAAACGATTCATT
TCTTTGGCGATAAAACGTGGGAGGGTGGCAATGATTTCGAAATTTTCGCT
GACAAACGTACGCTAGGCCACACTGTCACAAGTCCAGAAGATACGAAAAA
GCAGTTAACTGAACTCTTTTTCAAGTAGATGTCAACATTGAAAATACCAC
GAAAAAGGGGAACCTTTGTAGAATTTCGCAATGGGATGTTGAATATTTGT
CCTGTTGGTAGAAGTTGTAGTCAAGAAGAAAGAATTGAATTCAATAAATA
TGACCAGGAACACAATATACGTAAAAACTTCGTGGCAGCTTTGGAAAAAC
GATTTCCTGATTCAGGGCTGAAATATTCAATTGGTGGACAAATCAGTTTC
GATGTGTTCCCAAAGGGTTGGGATAAAACATACTGTTTACGTTTCATTGA
TACAAGTAAAATCAAAACGATTCATTTCTTTGGCGATAAAACGTGGGAGG
GTGGCAATGATTTCGAAATTTTCGCTGACAAACGTACGCTAGGCCACACT
GTCACAAGTCCAGAAGATACGAAAAAGCAGTTAACTGAACTCTTTTTCAA
GTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13843MSTRG.13843Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13843.3.p1MSTRG.13843.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13843.3.p1.exon1MSTRG.13843.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13843.3.p1.exon2MSTRG.13843.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13843.3.p1.exon3MSTRG.13843.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13843.3.p1.exon4MSTRG.13843.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13843.3.p1.exon5MSTRG.13843.3.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13843.3.p1.exon6MSTRG.13843.3.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000112_pilongenomesc0000112_pilon:1065034..1073802 +