MSTRG.13827.1.p1 (mRNA) -

Overview
NameMSTRG.13827.1.p1
Unique NameMSTRG.13827.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000112_pilon:676397..679824-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13827.1.p1 ID=MSTRG.13827.1.p1|Name=MSTRG.13827.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3428bp|location=Sequence derived from alignment at sc0000112_pilon:676397..679824- (Clytia hemisphaerica_ch_hm2_pilon)
TTCACTCTTTGGCTTCATACACCAAAGAAAAAAGAAGAAGAACATTGATA
CAGAACACCAAAGGTAAGAAGAACTTTGAAGAATGTGGCATCACTTGTTG
CTTTCTTTTTAAAGTTTATATATTGATCCAGCTGGCACGCAACGTTCTTT
CAACGTCAATTCGATGTTCACAACGTCCGATGAACGTTGAAACAACGTTG
TGTGTCAGCTGGGTAATATATTAGAGTGGTGTTATCTTTTTGATTATGAA
ATGCTAAAAACATTTCGGATGGTCTGATAGGTCTCTCTCGGTTTCGCTAA
CCCCCAACTGTCATACAAAGTTGTTTCAATGTTTATCTAATGCTCTAAAC
GTCCTTCTTCAATGTTGTGTTTAGCTGGGTTACCACAAACTTTATTGTTA
AATTACCACATCCCTGACATTCACAATTTTGCTCTTTATTTTTTTAGAGT
GAAACACAATGAAGCTCTTACTGGTTGCCTTAGCCTTGGTGCATATAGCA
CTGTGTGTGGAAGAGGATAAACTTCCTACCGCTGCAGACCTCCTAACAGA
GGCAAAGCGAACATGTGCAGATTTTATTGCTACCAGACCCAATGCTGTAT
GCTCGGAATATGGAGGTAATACACTGATCTTTAACTATTCAACTGGATTG
GGCTTCCCATATAAAGGAAGCGTTTCCAGTTTTAGGGCTGACTTATCCAC
CATCTTGGTCGCCAATAGTGATTTTCGAATATTTTCAAACTCAAAACGTT
TGAGATTCTAAGGTAAATTCTAACATGGCGGATAGTCAACTTCTAACTGG
ACACACTTCCTCTGAAAATCTGTGAGCAGTTAGCTTTTGTAAAAATCAAA
AATCAATCCTTAGGAAAAACAAAATAAATAATAAAGTATCTATCGGCAGA
CACGTTCATCCTTCCCAGGACTCATTAGTGCGACTCGGGTAAGCGAGCAC
AGACTGTTGTTATCACCAGAGTGCTCAGAGCACTAAGTGCTGAGCATCGC
ATATTCGCTTGTGGTGAACGGTGAAGCAGATCTTGCTCCTCAACAGAGTC
TATAGAGTGCTCAAAGAACTGAAGTTCTGAGCGAAATCAGTTAACTAATA
AAGTAAACAGATTTCTACATGTTTTCCGTAAAAATATTTCCAAAATGTTT
TAAATTCTTTAACATTTTTTCTTTTCCTTTCACAGAGGAAGCAAATAAAA
AGACGGTATTTTTCGAAACTTTCGCTGTAGTAGAGGATGACATTACCATG
CCTGCAGGAACAGGATTCGATATAGCGCAAGCAGAATGTAATGCAAACGG
AGGTTTCCTCGCTACTTTCAATAGTAATGAACAACTTGCGGAAATTACAA
CGATGGGTGGTATTCCGGATCTTGAGTAAGTACCCAGTTTATGTATCGGA
GGAAATCGAGGGCGACGGTAAGTGAAATCGATACAAAACAAAAGTCGATA
GTTGATGTACGGCTCTATATCGCCTTTGCTCGCCTAAACAGACGACGGTA
TTTTGGTGTTTTTACCGTCGTCGAGCAAAGTGGACGGTGATTTTGGAGAC
ATGTCAACCTTGCTTTATACCGTCCCCCTCCATATATATCGAAAACACAA
AATCGCTAGTAATCTTTTGAAGTGCCCTGGCATAAAGGTAGAATACAAAG
ATCTGTAAAGCCCGAAAGGCTAGCCCAGTCCTTTTTTCTTACCTATATAC
AATAAAAAAAGGTGTCAAAAAGGATTGAGTTTAGGGGGATAATTAAGTAA
TAAAGTGGCACGCACCTGACTGCGCAACTACGGGCGAAAAGGTGTATTTA
TATTTTGAAATTCTGTTTAACATTACTTATGTTCTGTTTTGCTCAGTGAT
GGAGACTCGGCCGTCATAATCATTGGTATTAAAGATGTAAGCGGTCAAGG
CACCTGGCAAAATTTCGACATGATCAAGACTGCAGTACCATCAGATTTGG
CTGTTGATGCCGTAATGGATCAGGAGTGTTTAGCTATCAAAATCGCAGGG
GTTACCGCAACCCTTGACACTGACGGAGTTGATACGACTCCAGATACTAT
CACTTATGAAACAATTGCTTGTCCTCAAGATGCCGCAACAACTCATTACA
TGTGCCGCTTTAACTACATTTCTAATTCCATTATTTACATTGATGAAGCT
AGACAATGGTCTGATGCCATGGTCAAGTGCCAAGAAATTGGTGGTGATTT
ATTTAGTATGAAGAACGCTGAAGAAAAAATGGCCCTTAACTGTCTCTTAA
ATGAAAGGTAAACAAATCATATTGATAGAAACAGCCCTGTCTCACTGCCC
CAGTGGAACTTTTTCCATTTCTATTGAAATCTCAATGGAAGCGGGTCTGT
GTTACAGGGGTATATATAATATAATGTTATATCCTCACATTGTTATATCA
GCCCTCGGGGGGGGGGGGGCAGTGGCTTTACCAACTGACGGTATGTGCGG
CGAAAAAAATGGCTTTTAGAATCGCACCCTTACAGTGCAGAAAAAAATCG
CTGAAATTCATACCCTTACAGTGCATTTTTTCAAATTTTAAACTCTTTTA
GAGAAACAAAATCAAGATTTTTCCTAGATTTGAAAGCATGTATTTATTTC
GTATTTTACTTTTCTGACAGAGTGAAACATACGGCATGGATTGGTTTGAA
TGATCTGAATCATGAAGGTGAATTCACTTGGTCAGATTACAGCATCTCCA
AATACACGCCATTCTGTACAAAACCAGCACCAGATGCTTTAGATAAAGAT
TGCGTCATGTTCCAATCAAACACTGTTAAACCACACGATCACGCAAACAA
AGCAGGATGTATTCAAGATGGCGACTGTTCCATGAATTTACCATACGTTT
GTAAAATCCGTGACCCAGAATCTGATGTTCATTCAGTCTTATTCAAAGAA
TATTTGGTTCATCTTTTGAAAGACGTCGTCTCAGCTGAAGGTGTCTGTGG
AAGAACTTGTGGTAACGGCATCGGAAGCATGTTTGGTGGACACAAAAGCT
CAGGTCTTATTCCACGCAAGAAGATCAGAGTTGTCCGCAAAGGTGGAAGA
AAACGTCAAACCAAACAACGTCGATCCAAACACAAGATCTTACCAAGACA
TAAGAAGGCAAACAATGTGGTCAAAAGACCATCTAGTGGTAGTGGTTCAC
TTGCTACATCACACAGCCTCTTAAGCCGACTTGGAATCCACACCTAAATG
ACGTAAGTAAAGACATTTATTACGTAATTCAAGACACAGGGCAACATAAT
ATAGGACAATACGGTATGACCACATAAAGAAACACGATGATAAAATTTTA
AGATTCTTGTTATTTATTTAACAAAAGATTTTAGAAATTAGATGTTATCT
TGATTATAATTTCCAGAGAGATTTAAAGAAGCCTTTGGTCCTAATTAAGA
AAAACTACCCAAGCCTATAGTCTAGTGC

Coding sequence (CDS) from alignment at sc0000112_pilon:676397..679824-

>MSTRG.13827.1.p1 ID=MSTRG.13827.1.p1|Name=MSTRG.13827.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5340bp|location=Sequence derived from alignment at sc0000112_pilon:676397..679824- (Clytia hemisphaerica_ch_hm2_pilon)
AGTGAAACATACGGCATGGATTGGTTTGAATGATCTGAATCATGAAGGTG
AATTCACTTGGTCAGATTACAGCATCTCCAAATACACGCCATTCTGTACA
AAACCAGCACCAGATGCTTTAGATAAAGATTGCGTCATGTTCCAATCAAA
CACTGTTAAACCACACGATCACGCAAACAAAGCAGGATGTATTCAAGATG
GCGACTGTTCCATGAATTTACCATACGTTTGTAAAATCCGTGACCCAGAA
TCTGATGTTCATTCAGTCTTATTCAAAGAATATTTGGTTCATCTTTTGAA
AGACGTCGTCTCAGCTGAAGGTGTCTGTGGAAGAACTTGTGGTAACGGCA
TCGGAAGCATGTTTGGTGGACACAAAAGCTCAGGTCTTATTCCACGCAAG
AAGATCAGAGTTGTCCGCAAAGGTGGAAGAAAACGTCAAACCAAACAACG
TCGATCCAAACACAAGATCTTACCAAGACATAAGAAGGCAAACAATGTGG
TCAAAAGACCATCTAGTGGTAGTGGTTCACTTGCTACATCACACAGCCTC
TTAAGCCGACTTGGAATCCACACCTAATGATGGAGACTCGGCCGTCATAA
TCATTGGTATTAAAGATGTAAGCGGTCAAGGCACCTGGCAAAATTTCGAC
ATGATCAAGACTGCAGTACCATCAGATTTGGCTGTTGATGCCGTAATGGA
TCAGGAGTGTTTAGCTATCAAAATCGCAGGGGTTACCGCAACCCTTGACA
CTGACGGAGTTGATACGACTCCAGATACTATCACTTATGAAACAATTGCT
TGTCCTCAAGATGCCGCAACAACTCATTACATGTGCCGCTTTAACTACAT
TTCTAATTCCATTATTTACATTGATGAAGCTAGACAATGGTCTGATGCCA
TGGTCAAGTGCCAAGAAATTGGTGGTGATTTATTTAGTATGAAGAACGCT
GAAGAAAAAATGGCCCTTAACTGTCTCTTAAATGAAAGAGGAAGCAAATA
AAAAGACGGTATTTTTCGAAACTTTCGCTGTAGTAGAGGATGACATTACC
ATGCCTGCAGGAACAGGATTCGATATAGCGCAAGCAGAATGTAATGCAAA
CGGAGGTTTCCTCGCTACTTTCAATAGTAATGAACAACTTGCGGAAATTA
CAACGATGGGTGGTATTCCGGATCTTGAATGAAGCTCTTACTGGTTGCCT
TAGCCTTGGTGCATATAGCACTGTGTGTGGAAGAGGATAAACTTCCTACC
GCTGCAGACCTCCTAACAGAGGCAAAGCGAACATGTGCAGATTTTATTGC
TACCAGACCCAATGCTGTATGCTCGGAATATGGAGAGTGAAACATACGGC
ATGGATTGGTTTGAATGATCTGAATCATGAAGGTGAATTCACTTGGTCAG
ATTACAGCATCTCCAAATACACGCCATTCTGTACAAAACCAGCACCAGAT
GCTTTAGATAAAGATTGCGTCATGTTCCAATCAAACACTGTTAAACCACA
CGATCACGCAAACAAAGCAGGATGTATTCAAGATGGCGACTGTTCCATGA
ATTTACCATACGTTTGTAAAATCCGTGACCCAGAATCTGATGTTCATTCA
GTCTTATTCAAAGAATATTTGGTTCATCTTTTGAAAGACGTCGTCTCAGC
TGAAGGTGTCTGTGGAAGAACTTGTGGTAACGGCATCGGAAGCATGTTTG
GTGGACACAAAAGCTCAGGTCTTATTCCACGCAAGAAGATCAGAGTTGTC
CGCAAAGGTGGAAGAAAACGTCAAACCAAACAACGTCGATCCAAACACAA
GATCTTACCAAGACATAAGAAGGCAAACAATGTGGTCAAAAGACCATCTA
GTGGTAGTGGTTCACTTGCTACATCACACAGCCTCTTAAGCCGACTTGGA
ATCCACACCTAATGATGGAGACTCGGCCGTCATAATCATTGGTATTAAAG
ATGTAAGCGGTCAAGGCACCTGGCAAAATTTCGACATGATCAAGACTGCA
GTACCATCAGATTTGGCTGTTGATGCCGTAATGGATCAGGAGTGTTTAGC
TATCAAAATCGCAGGGGTTACCGCAACCCTTGACACTGACGGAGTTGATA
CGACTCCAGATACTATCACTTATGAAACAATTGCTTGTCCTCAAGATGCC
GCAACAACTCATTACATGTGCCGCTTTAACTACATTTCTAATTCCATTAT
TTACATTGATGAAGCTAGACAATGGTCTGATGCCATGGTCAAGTGCCAAG
AAATTGGTGGTGATTTATTTAGTATGAAGAACGCTGAAGAAAAAATGGCC
CTTAACTGTCTCTTAAATGAAAGAGGAAGCAAATAAAAAGACGGTATTTT
TCGAAACTTTCGCTGTAGTAGAGGATGACATTACCATGCCTGCAGGAACA
GGATTCGATATAGCGCAAGCAGAATGTAATGCAAACGGAGGTTTCCTCGC
TACTTTCAATAGTAATGAACAACTTGCGGAAATTACAACGATGGGTGGTA
TTCCGGATCTTGAATGAAGCTCTTACTGGTTGCCTTAGCCTTGGTGCATA
TAGCACTGTGTGTGGAAGAGGATAAACTTCCTACCGCTGCAGACCTCCTA
ACAGAGGCAAAGCGAACATGTGCAGATTTTATTGCTACCAGACCCAATGC
TGTATGCTCGGAATATGGAGAGTGAAACATACGGCATGGATTGGTTTGAA
TGATCTGAATCATGAAGGTGAATTCACTTGGTCAGATTACAGCATCTCCA
AATACACGCCATTCTGTACAAAACCAGCACCAGATGCTTTAGATAAAGAT
TGCGTCATGTTCCAATCAAACACTGTTAAACCACACGATCACGCAAACAA
AGCAGGATGTATTCAAGATGGCGACTGTTCCATGAATTTACCATACGTTT
GTAAAATCCGTGACCCAGAATCTGATGTTCATTCAGTCTTATTCAAAGAA
TATTTGGTTCATCTTTTGAAAGACGTCGTCTCAGCTGAAGGTGTCTGTGG
AAGAACTTGTGGTAACGGCATCGGAAGCATGTTTGGTGGACACAAAAGCT
CAGGTCTTATTCCACGCAAGAAGATCAGAGTTGTCCGCAAAGGTGGAAGA
AAACGTCAAACCAAACAACGTCGATCCAAACACAAGATCTTACCAAGACA
TAAGAAGGCAAACAATGTGGTCAAAAGACCATCTAGTGGTAGTGGTTCAC
TTGCTACATCACACAGCCTCTTAAGCCGACTTGGAATCCACACCTAATGA
TGGAGACTCGGCCGTCATAATCATTGGTATTAAAGATGTAAGCGGTCAAG
GCACCTGGCAAAATTTCGACATGATCAAGACTGCAGTACCATCAGATTTG
GCTGTTGATGCCGTAATGGATCAGGAGTGTTTAGCTATCAAAATCGCAGG
GGTTACCGCAACCCTTGACACTGACGGAGTTGATACGACTCCAGATACTA
TCACTTATGAAACAATTGCTTGTCCTCAAGATGCCGCAACAACTCATTAC
ATGTGCCGCTTTAACTACATTTCTAATTCCATTATTTACATTGATGAAGC
TAGACAATGGTCTGATGCCATGGTCAAGTGCCAAGAAATTGGTGGTGATT
TATTTAGTATGAAGAACGCTGAAGAAAAAATGGCCCTTAACTGTCTCTTA
AATGAAAGAGGAAGCAAATAAAAAGACGGTATTTTTCGAAACTTTCGCTG
TAGTAGAGGATGACATTACCATGCCTGCAGGAACAGGATTCGATATAGCG
CAAGCAGAATGTAATGCAAACGGAGGTTTCCTCGCTACTTTCAATAGTAA
TGAACAACTTGCGGAAATTACAACGATGGGTGGTATTCCGGATCTTGAAT
GAAGCTCTTACTGGTTGCCTTAGCCTTGGTGCATATAGCACTGTGTGTGG
AAGAGGATAAACTTCCTACCGCTGCAGACCTCCTAACAGAGGCAAAGCGA
ACATGTGCAGATTTTATTGCTACCAGACCCAATGCTGTATGCTCGGAATA
TGGAGAGTGAAACATACGGCATGGATTGGTTTGAATGATCTGAATCATGA
AGGTGAATTCACTTGGTCAGATTACAGCATCTCCAAATACACGCCATTCT
GTACAAAACCAGCACCAGATGCTTTAGATAAAGATTGCGTCATGTTCCAA
TCAAACACTGTTAAACCACACGATCACGCAAACAAAGCAGGATGTATTCA
AGATGGCGACTGTTCCATGAATTTACCATACGTTTGTAAAATCCGTGACC
CAGAATCTGATGTTCATTCAGTCTTATTCAAAGAATATTTGGTTCATCTT
TTGAAAGACGTCGTCTCAGCTGAAGGTGTCTGTGGAAGAACTTGTGGTAA
CGGCATCGGAAGCATGTTTGGTGGACACAAAAGCTCAGGTCTTATTCCAC
GCAAGAAGATCAGAGTTGTCCGCAAAGGTGGAAGAAAACGTCAAACCAAA
CAACGTCGATCCAAACACAAGATCTTACCAAGACATAAGAAGGCAAACAA
TGTGGTCAAAAGACCATCTAGTGGTAGTGGTTCACTTGCTACATCACACA
GCCTCTTAAGCCGACTTGGAATCCACACCTAATGATGGAGACTCGGCCGT
CATAATCATTGGTATTAAAGATGTAAGCGGTCAAGGCACCTGGCAAAATT
TCGACATGATCAAGACTGCAGTACCATCAGATTTGGCTGTTGATGCCGTA
ATGGATCAGGAGTGTTTAGCTATCAAAATCGCAGGGGTTACCGCAACCCT
TGACACTGACGGAGTTGATACGACTCCAGATACTATCACTTATGAAACAA
TTGCTTGTCCTCAAGATGCCGCAACAACTCATTACATGTGCCGCTTTAAC
TACATTTCTAATTCCATTATTTACATTGATGAAGCTAGACAATGGTCTGA
TGCCATGGTCAAGTGCCAAGAAATTGGTGGTGATTTATTTAGTATGAAGA
ACGCTGAAGAAAAAATGGCCCTTAACTGTCTCTTAAATGAAAGAGGAAGC
AAATAAAAAGACGGTATTTTTCGAAACTTTCGCTGTAGTAGAGGATGACA
TTACCATGCCTGCAGGAACAGGATTCGATATAGCGCAAGCAGAATGTAAT
GCAAACGGAGGTTTCCTCGCTACTTTCAATAGTAATGAACAACTTGCGGA
AATTACAACGATGGGTGGTATTCCGGATCTTGAATGAAGCTCTTACTGGT
TGCCTTAGCCTTGGTGCATATAGCACTGTGTGTGGAAGAGGATAAACTTC
CTACCGCTGCAGACCTCCTAACAGAGGCAAAGCGAACATGTGCAGATTTT
ATTGCTACCAGACCCAATGCTGTATGCTCGGAATATGGAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13827MSTRG.13827Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13827.1.p1MSTRG.13827.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13827.1.p1.exon5MSTRG.13827.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13827.1.p1.exon4MSTRG.13827.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13827.1.p1.exon3MSTRG.13827.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13827.1.p1.exon2MSTRG.13827.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13827.1.p1.exon1MSTRG.13827.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000112_pilongenomesc0000112_pilon:676397..679824 -