MSTRG.13823.3.p1 (mRNA) -

Overview
NameMSTRG.13823.3.p1
Unique NameMSTRG.13823.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000112_pilon:649315..652190+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13823.3.p1 ID=MSTRG.13823.3.p1|Name=MSTRG.13823.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2876bp|location=Sequence derived from alignment at sc0000112_pilon:649315..652190+ (Clytia hemisphaerica_ch_hm2_pilon)
cacctttttgtctttttaccaGATATTTCTTAGTCCAACCAATAATCAAA
ATGGCTGACGATGCATTGACGGAAGGAGCTAAACTTTACCAAAAAGAATT
AAGATATATCACCGAGTTAGAAGGAGATGTGGAAGGAATGAAGTTCACAA
TCAAAGGTGAAGGTACTGGTGATGCCACCACTGGAACTGTCAAATCTAAA
TATATCTGCACCACTGGTGATCTTCCCGTACCTTGGGCTACCATCTTGAG
TAGCATATCTTATGGTGTCTTGTAagtaattttgatttgtttttttccaa
ttcttttaaATCAATATCATATGATTTAAACTTTATATATTAAGTGTGAC
TGTCTCAAATTGCTCCTATCCAAAAGGACTTCGCTGAAAACTTATAGTCT
ACTACAATAATAGCTATAAAAGGAAAGCTTTATTTTTAGCTCCTATCAAA
TTTACACTCTTTTACTTAGATGTTTCGCCAAATATCCACGTCACATTGCC
GACTTTTTCAAGAGTACGCAACCTGACGGTTATTCACAAGAGAGAACTAT
CAAGTTTGATAACGATGGCCAATATGATGTCAAAGCGAAAGTCACTTATG
AAGAAGGGACGGTCTACAACAGAGTGAATCTGAAAGGTATTGTCTATAAG
TTGAGTACAAGTTAAGGATTTGATAACGGGTGGGGCTCAGAGTTAACGAC
CGATAGGGGAAAGCTGCTGTATTTCGAAAATTACAACTATGACAATAACA
TTTGGCACAAATGGGATTTCCctgtaaaattcaaaaaaaatgcaaatacc
gcgggtgcgccacaaaaaaaatgcaaataccgcgggtgcgccacaaaaaa
aatgcaaataccgcgggtgcgccacaaaaaaaattccctctttaagatta
attttctccaaatctgaaaatttcaaaagaaccattccaagttcattgga
aagaagaacgataaacttaaattttgatgggtcatttattaaattcgatt
tattagatcaaaagttcgaaaacgttgaaattcgacctatcaaattttta
attcaaaatttgctatcgcaatagcctttacatgattaaaagcatttttc
agtaattaaacaaataaattttgaaactgaagggttgaaagggtttaaaa
tccttaaatcactttaatttacttttaccgaaattttccaaaGACTTTTG
GTTTTAGATTGGATAAAGTCTGTGTAAGGCTGaatgtacctcgaaaccca
tatttgatgtatttttatgaattttaccagatttgtTGGccttttttgac
gaatttcctgccttttattgaaatttaaccttactttatataacaaaagg
tcattcaGACAGCTAATtagctttttagaaaattaattttaaagagagaa
acttttttgtggcgcaacCGGTAGTTCTTAAGTGCTTTAACTCAGGTTTG
GAAAGTAaatttttaactctgagtttcaaCATGAGGCTTGTaacttaaaa
tgagacttaagacttcgGAGGATCCAAAAGCTTATGAATAGTCCGACTAG
ACTGATAAAGACTGGAAGCCATTATACCACTCCCAAATCTTTGGTCAAGT
TGATTTGGTTAGGTGCTTGAAATTCATATTATATTTAGGCCAGATTGAAT
TGTTTTCAGATCCAAGAAAATCCAAAAGTTCCGACTAGTGGAGTAGTCTG
AATGACATTGAATGTAGATCATCAACATTGATAATTGGGTCTTATCCTTG
ATAATTGAATTTGCTCCCGAATTTACTTTTTTAGGTACTGGCTTCAAATC
AAACGGCAACATCTTGGGCATGCGCATTCTTTACCATTGTCCTCCCCATT
GCGTCTATGTTCTTCCTGACCGTAAAAATGGTGGAATGAGATTAGAATTT
AACAAGGTGAGAACAAATACATTAAAAAGATTGCTACAAGCATGGTTAAT
CTAATTATTGGTACCTACATAGTTTTGCCTGGAATGAATTTGtttctttt
atcaattttcactttttggctaattcgattttcaagggggattggatttt
catcgaataaaggagcttatcgaataagggagcgtcgtttatgagagttt
cttgttgacggggactttaaatttcgtcgaataagggagcctatcgaata
gtagaacgtcgaattagagagcgtcaactgtagatatgtaaatattcaaa
aattgctTTCTGTTTAACGtccaaaagaaatttcttttgctatcCCTTTT
GAATTGTTTAGGCTGAGTTGTCAAAACCCACGCTTGCGTCAGTATAGGTT
TAAGCGTATACGTCACAAAAAATGGAACCTACTATATTCACCCCTTCCCT
TATTTCGGATAATTTTCCCTTTTGTTCTCTCAGACGACTGATATTAAATT
GATTGTTCTTTTATGCTCAGGCTTTTGATGTTATGGGTGGAGGTCATCAA
TTGGCTCGCCACGCCCAATTCAACAAACCATTAGGAGCCTGGGAAGAAGA
TTACCCTGGGTACCATCACATGTCATTCTGGACATCTTTCGGTAAAGATC
CAGATGATGATGACACTGACCATTTAACCATCGTTGAAATCATCAAAGCT
ATCGACTTGGAAACTTACCGttaaattttgaatcaaattgcTACATAACA
ACACTTAAAGAAAACCATAATGGTATCCACAAGAATCCAAGGACACTACA
TAAACACTTTACTCACACTTTCATTGTATAAAATTTTCAGGTTTagttag
gttttttctcataatATTTTGAGGCAATAACTGGCATCAATACCATATTC
TTGAAGCCGTCTTTGTTTTGAAGTTAGCAACACTGTACTAGTATTTATAT
ATTCAAGAAATTTTCCATTCAAGAAA

Coding sequence (CDS) from alignment at sc0000112_pilon:649315..652190+

>MSTRG.13823.3.p1 ID=MSTRG.13823.3.p1|Name=MSTRG.13823.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2856bp|location=Sequence derived from alignment at sc0000112_pilon:649315..652190+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGACGATGCATTGACGGAAGGAGCTAAACTTTACCAAAAAGAATT
AAGATATATCACCGAGTTAGAAGGAGATGTGGAAGGAATGAAGTTCACAA
TCAAAGGTGAAGGTACTGGTGATGCCACCACTGGAACTGTCAAATCTAAA
TATATCTGCACCACTGGTGATCTTCCCGTACCTTGGGCTACCATCTTGAG
TAGCATATCTTATGGTGTCTTATGTTTCGCCAAATATCCACGTCACATTG
CCGACTTTTTCAAGAGTACGCAACCTGACGGTTATTCACAAGAGAGAACT
ATCAAGTTTGATAACGATGGCCAATATGATGTCAAAGCGAAAGTCACTTA
TGAAGAAGGGACGGTCTACAACAGAGTGAATCTGAAAGGTACTGGCTTCA
AATCAAACGGCAACATCTTGGGCATGCGCATTCTTTACCATTGTCCTCCC
CATTGCGTCTATGTTCTTCCTGACCGTAAAAATGGTGGAATGAGATTAGA
ATTTAACAAGGCTTTTGATGTTATGGGTGGAGGTCATCAATTGGCTCGCC
ACGCCCAATTCAACAAACCATTAGGAGCCTGGGAAGAAGATTACCCTGGG
TACCATCACATGTCATTCTGGACATCTTTCGGTAAAGATCCAGATGATGA
TGACACTGACCATTTAACCATCGTTGAAATCATCAAAGCTATCGACTTGG
AAACTTACCGttaaATGGCTGACGATGCATTGACGGAAGGAGCTAAACTT
TACCAAAAAGAATTAAGATATATCACCGAGTTAGAAGGAGATGTGGAAGG
AATGAAGTTCACAATCAAAGGTGAAGGTACTGGTGATGCCACCACTGGAA
CTGTCAAATCTAAATATATCTGCACCACTGGTGATCTTCCCGTACCTTGG
GCTACCATCTTGAGTAGCATATCTTATGGTGTCTTATGTTTCGCCAAATA
TCCACGTCACATTGCCGACTTTTTCAAGAGTACGCAACCTGACGGTTATT
CACAAGAGAGAACTATCAAGTTTGATAACGATGGCCAATATGATGTCAAA
GCGAAAGTCACTTATGAAGAAGGGACGGTCTACAACAGAGTGAATCTGAA
AGGTACTGGCTTCAAATCAAACGGCAACATCTTGGGCATGCGCATTCTTT
ACCATTGTCCTCCCCATTGCGTCTATGTTCTTCCTGACCGTAAAAATGGT
GGAATGAGATTAGAATTTAACAAGGCTTTTGATGTTATGGGTGGAGGTCA
TCAATTGGCTCGCCACGCCCAATTCAACAAACCATTAGGAGCCTGGGAAG
AAGATTACCCTGGGTACCATCACATGTCATTCTGGACATCTTTCGGTAAA
GATCCAGATGATGATGACACTGACCATTTAACCATCGTTGAAATCATCAA
AGCTATCGACTTGGAAACTTACCGttaaATGGCTGACGATGCATTGACGG
AAGGAGCTAAACTTTACCAAAAAGAATTAAGATATATCACCGAGTTAGAA
GGAGATGTGGAAGGAATGAAGTTCACAATCAAAGGTGAAGGTACTGGTGA
TGCCACCACTGGAACTGTCAAATCTAAATATATCTGCACCACTGGTGATC
TTCCCGTACCTTGGGCTACCATCTTGAGTAGCATATCTTATGGTGTCTTA
TGTTTCGCCAAATATCCACGTCACATTGCCGACTTTTTCAAGAGTACGCA
ACCTGACGGTTATTCACAAGAGAGAACTATCAAGTTTGATAACGATGGCC
AATATGATGTCAAAGCGAAAGTCACTTATGAAGAAGGGACGGTCTACAAC
AGAGTGAATCTGAAAGGTACTGGCTTCAAATCAAACGGCAACATCTTGGG
CATGCGCATTCTTTACCATTGTCCTCCCCATTGCGTCTATGTTCTTCCTG
ACCGTAAAAATGGTGGAATGAGATTAGAATTTAACAAGGCTTTTGATGTT
ATGGGTGGAGGTCATCAATTGGCTCGCCACGCCCAATTCAACAAACCATT
AGGAGCCTGGGAAGAAGATTACCCTGGGTACCATCACATGTCATTCTGGA
CATCTTTCGGTAAAGATCCAGATGATGATGACACTGACCATTTAACCATC
GTTGAAATCATCAAAGCTATCGACTTGGAAACTTACCGttaaATGGCTGA
CGATGCATTGACGGAAGGAGCTAAACTTTACCAAAAAGAATTAAGATATA
TCACCGAGTTAGAAGGAGATGTGGAAGGAATGAAGTTCACAATCAAAGGT
GAAGGTACTGGTGATGCCACCACTGGAACTGTCAAATCTAAATATATCTG
CACCACTGGTGATCTTCCCGTACCTTGGGCTACCATCTTGAGTAGCATAT
CTTATGGTGTCTTATGTTTCGCCAAATATCCACGTCACATTGCCGACTTT
TTCAAGAGTACGCAACCTGACGGTTATTCACAAGAGAGAACTATCAAGTT
TGATAACGATGGCCAATATGATGTCAAAGCGAAAGTCACTTATGAAGAAG
GGACGGTCTACAACAGAGTGAATCTGAAAGGTACTGGCTTCAAATCAAAC
GGCAACATCTTGGGCATGCGCATTCTTTACCATTGTCCTCCCCATTGCGT
CTATGTTCTTCCTGACCGTAAAAATGGTGGAATGAGATTAGAATTTAACA
AGGCTTTTGATGTTATGGGTGGAGGTCATCAATTGGCTCGCCACGCCCAA
TTCAACAAACCATTAGGAGCCTGGGAAGAAGATTACCCTGGGTACCATCA
CATGTCATTCTGGACATCTTTCGGTAAAGATCCAGATGATGATGACACTG
ACCATTTAACCATCGTTGAAATCATCAAAGCTATCGACTTGGAAACTTAC
CGttaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13823MSTRG.13823Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13823.3.p1MSTRG.13823.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13823.3.p1.exon1MSTRG.13823.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13823.3.p1.exon2MSTRG.13823.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13823.3.p1.exon3MSTRG.13823.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13823.3.p1.exon4MSTRG.13823.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000112_pilongenomesc0000112_pilon:649315..652190 +