MSTRG.13816.1.p1 (mRNA) -

Overview
NameMSTRG.13816.1.p1
Unique NameMSTRG.13816.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000112_pilon:534851..536306-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.13816.1.p1 ID=MSTRG.13816.1.p1|Name=MSTRG.13816.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1456bp|location=Sequence derived from alignment at sc0000112_pilon:534851..536306- (Clytia hemisphaerica_ch_hm2_pilon)
CGAAAATCCAAATCGGACAAAAATAAACCAGCTGGGTTTGTTTACATCAT
CAACATGGCGGTATCTGATTTGTTTGTTGGAGTTGTTATGGTGATTCTCA
AGTCAATGAATCCTTATATGCAAACATCTTTAGCTGACAATGTTGCGGCG
CAAACTGCCTATCACGTAATGAAGTTTTGCATGGTTCGTTTCACACTTTT
GGTTTCAGTTTTCAATCTGGTTGCGCTAACCATAGATCGTCTGTACGCCA
TAAGATTCCCGTTTGCCGCACAAAGAATGGAGCGCCGTTTTCACATCAAA
GTTTGTTGCGGAATCTGGTTTGTATCCCTTGTTATAACTTCAATTTTCTA
TATGCTTATTACATACAGCTTGAAAGATAGTTTACGATACAAAGATGCTA
TCTTCCCTATCGCGACGATTCCAGCAACGGTGTTGTTTTTTGTAAGTTAC
ACAATGATTTTTACCGTCGTTCGACGTACGTCAAATACCGTCAAGACGAT
GAAAATATCGGTTAGAAGTAAAAATGGAACGAACAAAGAACTTCAACAAT
CAACACAAAGAAGCCGTGAAGAAAAAGAAAAGGTGATTTTTTTTTCAATT
GTTTTTGCAAATGTCACTCTTCAGCCATACACACCGTGGGTTAATCGACT
GTCGCTCCTAGTTTTTTCAAAATGCCTTCAAATTGCTCGCTGGGGTAAAA
TTGCTTTATTGTCCTCAATTTTCCTCATCTTTTTACAGGTAATTCTGCAA
AAAAGAGAAAGTAAAGGAAGGGCTGATGTTGATATTATTGATGTTACTCT
TGCTATTTTTTCAGTTTCACAGATTTGATACTAACCAAAAAAAGATTTTT
ACACTTCTAAAAAAGAGCACTTTGCAACTATGTTTCACGTTAGATTGTCA
CATGATAAAAAAATATCTTTACAAATTAAATATCATCCTTTTTTAGAGGG
CATTTATACGGCTGGCAGTAAAGACTGTGGCTGTTTTCGTTATATGTTGG
TTACCTTTGTCAATCATTTCCATCTACAAATTAGTCAGCACAGAAGCTCC
GCATCCAAACCTTGAATCTACAGCATTTACATTGGCCCTGTTCAATTCTC
TCATCGACCCCTACGTATATTTTACACATTTTCAACGTGCCATTAGGAAA
CTCTTTGGTTGCTGCATCAGAAACCGCACAGATCCATTTCTGATCCAGGC
ATCAAGTAGTTCAAGCAATTCTACGAAGGTATAAACATCAATAGTATCTC
GATTTCAGAATGATGTTGCGTAAAACAACGAAACAAAAACAAAAAAACGT
AATATCTGTTATCATCAACATGAAAAATAATCTGATTGGCTAAAAACGCA
TACATAAATACTGTATTTCATATTGTACCGTACAAATACAAGACCGCTTT
CAAAATAGGGGTTTGGTAAGCGAGAGATCATACTTTGTACAATGATTAGA
AAAGCC

Coding sequence (CDS) from alignment at sc0000112_pilon:534851..536306-

>MSTRG.13816.1.p1 ID=MSTRG.13816.1.p1|Name=MSTRG.13816.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1632bp|location=Sequence derived from alignment at sc0000112_pilon:534851..536306- (Clytia hemisphaerica_ch_hm2_pilon)
AGGGCATTTATACGGCTGGCAGTAAAGACTGTGGCTGTTTTCGTTATATG
TTGGTTACCTTTGTCAATCATTTCCATCTACAAATTAGTCAGCACAGAAG
CTCCGCATCCAAACCTTGAATCTACAGCATTTACATTGGCCCTGTTCAAT
TCTCTCATCGACCCCTACGTATATTTTACACATTTTCAACGTGCCATTAG
GAAACTCTTTGGTTGCTGCATCAGAAACCGCACAGATCCATTTCTGATCC
AGGCATCAAGTAGTTCAAGCAATTCTACGAAGGTATAAATGGCGGTATCT
GATTTGTTTGTTGGAGTTGTTATGGTGATTCTCAAGTCAATGAATCCTTA
TATGCAAACATCTTTAGCTGACAATGTTGCGGCGCAAACTGCCTATCACG
TAATGAAGTTTTGCATGGTTCGTTTCACACTTTTGGTTTCAGTTTTCAAT
CTGGTTGCGCTAACCATAGATCGTCTGTACGCCATAAGATTCCCGTTTGC
CGCACAAAGAATGGAGCGCCGTTTTCACATCAAAGTTTGTTGCGGAATCT
GGTTTGTATCCCTTGTTATAACTTCAATTTTCTATATGCTTATTACATAC
AGCTTGAAAGATAGTTTACGATACAAAGATGCTATCTTCCCTATCGCGAC
GATTCCAGCAACGGTGTTGTTTTTTGTAAGTTACACAATGATTTTTACCG
TCGTTCGACGTACGTCAAATACCGTCAAGACGATGAAAATATCGGTTAGA
AGTAAAAATGGAACGAACAAAGAACTTCAACAATCAACACAAAGAAGCCG
TGAAGAAAAAGAAAAGAGGGCATTTATACGGCTGGCAGTAAAGACTGTGG
CTGTTTTCGTTATATGTTGGTTACCTTTGTCAATCATTTCCATCTACAAA
TTAGTCAGCACAGAAGCTCCGCATCCAAACCTTGAATCTACAGCATTTAC
ATTGGCCCTGTTCAATTCTCTCATCGACCCCTACGTATATTTTACACATT
TTCAACGTGCCATTAGGAAACTCTTTGGTTGCTGCATCAGAAACCGCACA
GATCCATTTCTGATCCAGGCATCAAGTAGTTCAAGCAATTCTACGAAGGT
ATAAATGGCGGTATCTGATTTGTTTGTTGGAGTTGTTATGGTGATTCTCA
AGTCAATGAATCCTTATATGCAAACATCTTTAGCTGACAATGTTGCGGCG
CAAACTGCCTATCACGTAATGAAGTTTTGCATGGTTCGTTTCACACTTTT
GGTTTCAGTTTTCAATCTGGTTGCGCTAACCATAGATCGTCTGTACGCCA
TAAGATTCCCGTTTGCCGCACAAAGAATGGAGCGCCGTTTTCACATCAAA
GTTTGTTGCGGAATCTGGTTTGTATCCCTTGTTATAACTTCAATTTTCTA
TATGCTTATTACATACAGCTTGAAAGATAGTTTACGATACAAAGATGCTA
TCTTCCCTATCGCGACGATTCCAGCAACGGTGTTGTTTTTTGTAAGTTAC
ACAATGATTTTTACCGTCGTTCGACGTACGTCAAATACCGTCAAGACGAT
GAAAATATCGGTTAGAAGTAAAAATGGAACGAACAAAGAACTTCAACAAT
CAACACAAAGAAGCCGTGAAGAAAAAGAAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.13816MSTRG.13816Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13816.1.p1.exon2MSTRG.13816.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.13816.1.p1.exon1MSTRG.13816.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.13816.1.p1MSTRG.13816.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000112_pilongenomesc0000112_pilon:534851..536306 -