MSTRG.13799.1.p1 (mRNA) -

Overview


Name	MSTRG.13799.1.p1
Unique Name	MSTRG.13799.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000112_pilon:323366..328839+
coding sequence from alignment at sc0000112_pilon:323366..328839+

mRNA from alignment at sc0000112_pilon:323366..328839+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.13799.1.p1 ID=MSTRG.13799.1.p1|Name=MSTRG.13799.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5474bp|location=Sequence derived from alignment at sc0000112_pilon:323366..328839+ (Clytia hemisphaerica_ch_hm2_pilon)
AATTGGTCTTCTCTTTTTCAGGTTGTatgatttcaaaaatcgaactttAA
TGGTTGAAAGTAGTACTGGAActtattttattaaaatgaaAGGTACCCCT
ACACCCACTGGATGTTTCACTAAACGTAAACTAGCTATCGTCGGTATAGC
CGTCGCTGTGCTTGTACTAGTCGGCTACGTATTACGCGAACGTTATTTCT
ACCGCGCGGACGTTTTAATTGCTATTCAAACTAACGTTCAACATGCACGA
AAAGTGGTCGGCAACAAGATTGGAAATAAAGGGATACttggatttttgaa
ttttggcggGAAAAACAACGTCGGTGAAACGGATGATAAGAAAATTAAGA
CAAATGTATGGGATGAATGGATGATTAAACAAACGGCAATGACTTCTATT
GGAGATATTTATGACCATTGTGGTAAGCATTTTATCCTTTCATTTTCTCA
ATCGTACCCTTAAAAGATATCATTTTTTATGATGTACAGTAAAATCTCTT
TAATTCGAGCTTCTATAAATGGAATTTCTTAGAATCCGAAAACGAATTTT
CGAGAAATCATTTTGTTCATTCTGCTTTGTCAGTATTAGAGGTGCTCCAC
AGTTGATCCTCGCTATTCCGAACTCGAACTAggaatctaatttaatcgaa
tTACGGAGAGATCCGAATTATAGAACAAATTTTACGACGGGGCTTCAGAT
TTCGAATTATAATATTTGAATTATATAAAATCGAGTAAAGGGGAGTCGAA
TATATGTTTCTTTTATCGCTTTTACttctttttgataattattAGCGCGA
AGTAACTTTGAAATCCGGTTTAAGGTTATGATGACCTTTTTACTTAAATA
ACACGAAAATCTATGTTTTTGTTGACGCGATACGATCATTGtattgtttt
gagtgcatttatTGATTTCTCACAACTCATAAGTGTAACTAAGTTACTTA
aggaattttttgtttattttgaacatgtaaacttttaggtattttgtttt
tatagctttaaacactctttttataagaaccagtaaatttttgttgggGC
TCGAATTTTCTTACTACTAGGctatttatcttatttttacTACGTTGACC
CTGGATTCGCTGGCTCTTAAATCATAAGTAATAAGAACGCTTTTTAGACT
AATTTTCTAGAGCGATTTTTGCTTCGTTGAGTAGGCGAGACAATTGAATT
CAAGATATTAGGGTATGGTTACATCATTAGAGTCTATATACAAACCACTG
TTATCCCGTAACAGTTACTgcattatcatataacactTATATTACTTGTa
caatctccataactcaaacctctattactcgaacgtctccttaaatcgaa
cctctattattcgaacgtctccttaactcgaatgaATTCGTTGGCACCGT
GaaagttttttcttcataagctcttttttttaagttttcctGATCTGAAC
TCTTTATaatctaccgggtgcgccacaaaaaagtttctctctttaaaact
aattttctcgaaatcttaaagttttaaaagaaccatttctatttcattgg
aaagaagaaagataaacttaaattttggtgggtcatttattgaattcaat
tcattagatcaaaagttatactcaattgaataaaaaagttactttcagaa
aatgctcaaaaacgttaaaaatcgacctatcaaattaaacagaagcatgg
TTTATatgatatatcagtattttcgtttcagtcattaaaaatgataatta
gctgtctaaatgaccttttgttatttaaaggaaggttgaagttatttaaa
ataaggttgaatttcaatgaaaggaagaaaattcgtcgaaaaaggcaaaa
taatttggtaaaattcataaaaatacatcaaatatgggtttcgaggtaga
tccagccttacactttatccagtctagaaccaaaaatccaagaaaaattC
CAGTAAAACCAAATAAGATTAATGTTGATGaggattttaaaccctttcga
ccctttcgtttcaaaatttatgagtTTTGTTacggaaaaatgctcttaat
tatgtaaaggctattgcaattgccaaatttaaagtaaaaatttgaatggt
cgatttttgacgttttcgagcactttctgaaagtaacttttttattcaat
tgagcataacttttgatctaatgaatcgaattaaataaatgaccaatcaa
aatttaagtttatctttcttctttccaatgaaataggagtggttctttta
gaaattttagattttgagaaaattagtttcaaagagagaaacttttttgt
ggcgcacccggtacataTATAAATACaactccttctcacagacccggtgg
gatttttttcagctagtgaaaaaataaataactaatataaataacaaatt
aaaataaataactaacaatTTCGTTTTCCCACTGACCGTTCGATTTATGG
AGACACTTCTGTATGCCACCTTTTAAAAACAACTTCAGTCCAATTCTACA
CGTACTTGTTTCACTTTACTTACAGACAACACTACACGAACGAAAATTGG
TAAAGTCGTTCTTCAACCTAAACCAGATGGCAAAGAAGGAGTTCAAATCA
AATCATATCTCAATCAAACTTACAGTAAGATTTCtgaatttaatgttttt
caCTTCTATTGGGGATACCCAGCGGGGGACTAGAGAGAAATGAGCCAATG
GATCACCTTTCCTTACTGTTACACCACCGTACATATATCTATACTGTGAC
GATGTACTATTAAAGTTTCACCAACTACTATTAAAGTTTCACCAACTTTA
TGAATAAGTGTTGGCACCTCTATGTCCTCTATAGTattaatacatgtttt
tttttataagcaagtgtatgccccttggtcaggctcgagtatgcttaagc
tttcaacACATCCAGGCATAgcatatgcttattatatgcttatgaattat
tatgcttttgattcacccaacccaatttttataaaatttctgaaattttg
ttaACATTCGATTCAAAAGGCGTTCAGATTTTTGGAACAGTGGAATGTGG
CTAGTTGTGGAGTGTCTTTTATTACTTGACCACTTCCAAAcctttttgaa
gataaaaagaTTGACCacgtgaaaaatatttcaggctggcgTATATGCTC
AGGctatgcttaggaaatctgcaaatcatATGCTTaaaagcgttatgctt
ataaaaaaaaaagatgtaacAGAAACAGCTTAGAGTAAAagctcgttgga
aagataatttttatcGGCTCGAGGGGGGAGCTATAATTATTGACTCAAAA
GAGATataaatatgaagaaaaaatcTGAACGTATTTGAAATCATCAGggt
ttagaatattttttttcttcgttgtcaaattttcaggaaattctttaaaa
atttatgtATAGTCactcaaaattatatttccaaCAAGTAATTACTTTAG
TTAAGGTCAACCAACTTTGATCATTCCTACGCAGCCCACCCATTCATATA
GAAAAGCTTCCAGCATGAACTTATCATTATTTGGATTCACGCCCTAGTCC
TTCTTTCATGTGAATATACTATTTTAAACGATTATTAACTAttttttcga
ggttttcaatttttttcatacttTCAATTTCGCTATTTGGGTGAGCAGCA
GTGATTACCGAATGTACTCGAACAGTTTATTTAACGATTTAAATTTTTGT
ATAGATTTTTCCCACTAATTTTTAAGTGGAGAGGTATAATTATTAGATCA
AAAAAGATAGAAATAATCCAAAATTCTTGCAATATGTTGTTCTTTCTCCT
TCTTTCAGAATACGAGATTACATCATCTTCAGTGAAAATGGAAGTCTTTT
ACAATGATGAACTTTTCATGTCCAAAAACAAAGATATGTGTGAAGAAGCT
AAACTGTTAGATACACCGTACTCGTGTCCTATCAAAGCAGGTCAGAAATT
ATTCCCGATCAAACGTGTTTTAGGGAAATGCACGGCTCGTGTAACTTATG
TAGGAAATAAATGGTTTCAAATCCTACATACTTTACGCGtacaagaattt
tcaaagacattaactttcgcgaaaaaggccaaaattcacGATataatcgc
gaaagtttctgctcgcgttTGTACGCTTGAAGTAGAATATTCGACTCTAG
CTTTCGGCTAGACCTCATTGGTCAGATACTTTGTAGTCCacaaacaacaa
tttttttttataaagtccCTGTCTCGGTGACCCAATGAGAATTCTTTGGT
CAATTTGGAGAAATTGAGTCAAATGTTTATATAATAGGTACCGTGAGTGT
CACAATTTCTGAATATTACACTGCGACGACGTATTAagcaaaaagatttt
gctttgcaGAGATTGAGAAACTGCAATTAAGGTTCATACTCAACTCCAGT
GCTCGCGATACATTATATACCCTTTTCTCTTTTACAACTAGGTTACAAAT
TGGTGATAGAAGATGTTGCAAAGTTGCCATCTTATATTCCAAAGGTAATA
GAATATTTACTTAAATGAACCCCTTTCCACTgccaaaaacaaaaagcttT
AAACAACTGAAATAATGACACTATATTGAGATCTGGCACACAACTTTATT
TGTATGTTCAGTCGTGCAAACTTTCGCAAGCGGAAACTTGTCgagaaatc
gcgaaatttacgacatttttactttcgcgaatttgacgaaaaatgttttt
tgtgagcataaactttcgtgaGTCAACacaaaaagatgaaatttttcaca
cgaaaatatggcttagagggacaaataatTCTtgaattggattgaaaatt
taCTCTTATGACTTCTGAGGCTTAACAGGCTATGAAGTGCCACAAATCTT
GCATTTGATTTTAAGttagaagttttacagattttccaTTTTATCAAGAG
GTTTTCGCAATTGGTCCTTTCAAGAATTTAAAAATTACTTTCGCGGAAAG
GgttaaaattcgcgaaaattgcgaaaatttCTGCTCGTGAAAGTACTaaa
aaaaTATGCCTAGtttagcaagctagacgactaattcagacatagtagaa
acaaagcaaaaagtaatggagggaacaaattttccaggtttatacaaact
aaatcccgtaacaataatcgtattatcatataacgcctatactactgtat
tacacgcattatgaacgactccagtctaaacTATGCCtaaattttgatat
cttttttttcAGGGGAAATATCGGATATTTTCAATCGTTTATGatcaaga
taaaaaagaaattggttgcactttcattgattttaaaacTGGTGAAAATG
TTTGAATATAAATAATATGTTACTATGGAAATTTACGtaaattttattat
cattttatAGCTCGAATACCGATACTGAACCAATGAAGTGACTTTGTTTT
GCAGTCGTTGCGTCTTAGTTTTATACTCAGACCAAAAAAGGTTAATACTc
ctaattcgaatatttctgttgttc

Coding sequence (CDS) from alignment at sc0000112_pilon:323366..328839+

>MSTRG.13799.1.p1 ID=MSTRG.13799.1.p1|Name=MSTRG.13799.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3570bp|location=Sequence derived from alignment at sc0000112_pilon:323366..328839+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaAGGTACCCCTACACCCACTGGATGTTTCACTAAACGTAAACTAGC
TATCGTCGGTATAGCCGTCGCTGTGCTTGTACTAGTCGGCTACGTATTAC
GCGAACGTTATTTCTACCGCGCGGACGTTTTAATTGCTATTCAAACTAAC
GTTCAACATGCACGAAAAGTGGTCGGCAACAAGATTGGAAATAAAGGGAT
ACttggatttttgaattttggcggGAAAAACAACGTCGGTGAAACGGATG
ATAAGAAAATTAAGACAAATGTATGGGATGAATGGATGATTAAACAAACG
GCAATGACTTCTATTGGAGATATTTATGACCATTGTGACAACACTACACG
AACGAAAATTGGTAAAGTCGTTCTTCAACCTAAACCAGATGGCAAAGAAG
GAGTTCAAATCAAATCATATCTCAATCAAACTTACAAATACGAGATTACA
TCATCTTCAGTGAAAATGGAAGTCTTTTACAATGATGAACTTTTCATGTC
CAAAAACAAAGATATGTGTGAAGAAGCTAAACTGTTAGATACACCGTACT
CGTGTCCTATCAAAGCAGGTTACAAATTGGTGATAGAAGATGTTGCAAAG
TTGCCATCTTATATTCCAAAGGGGAAATATCGGATATTTTCAATCGTTTA
TGatcaagataaaaaagaaattggttgcactttcattgattttaaaacTG
GTGAAAATGTTTGAatgaaAGGTACCCCTACACCCACTGGATGTTTCACT
AAACGTAAACTAGCTATCGTCGGTATAGCCGTCGCTGTGCTTGTACTAGT
CGGCTACGTATTACGCGAACGTTATTTCTACCGCGCGGACGTTTTAATTG
CTATTCAAACTAACGTTCAACATGCACGAAAAGTGGTCGGCAACAAGATT
GGAAATAAAGGGATACttggatttttgaattttggcggGAAAAACAACGT
CGGTGAAACGGATGATAAGAAAATTAAGACAAATGTATGGGATGAATGGA
TGATTAAACAAACGGCAATGACTTCTATTGGAGATATTTATGACCATTGT
GACAACACTACACGAACGAAAATTGGTAAAGTCGTTCTTCAACCTAAACC
AGATGGCAAAGAAGGAGTTCAAATCAAATCATATCTCAATCAAACTTACA
AATACGAGATTACATCATCTTCAGTGAAAATGGAAGTCTTTTACAATGAT
GAACTTTTCATGTCCAAAAACAAAGATATGTGTGAAGAAGCTAAACTGTT
AGATACACCGTACTCGTGTCCTATCAAAGCAGGTTACAAATTGGTGATAG
AAGATGTTGCAAAGTTGCCATCTTATATTCCAAAGGGGAAATATCGGATA
TTTTCAATCGTTTATGatcaagataaaaaagaaattggttgcactttcat
tgattttaaaacTGGTGAAAATGTTTGAatgaaAGGTACCCCTACACCCA
CTGGATGTTTCACTAAACGTAAACTAGCTATCGTCGGTATAGCCGTCGCT
GTGCTTGTACTAGTCGGCTACGTATTACGCGAACGTTATTTCTACCGCGC
GGACGTTTTAATTGCTATTCAAACTAACGTTCAACATGCACGAAAAGTGG
TCGGCAACAAGATTGGAAATAAAGGGATACttggatttttgaattttggc
ggGAAAAACAACGTCGGTGAAACGGATGATAAGAAAATTAAGACAAATGT
ATGGGATGAATGGATGATTAAACAAACGGCAATGACTTCTATTGGAGATA
TTTATGACCATTGTGACAACACTACACGAACGAAAATTGGTAAAGTCGTT
CTTCAACCTAAACCAGATGGCAAAGAAGGAGTTCAAATCAAATCATATCT
CAATCAAACTTACAAATACGAGATTACATCATCTTCAGTGAAAATGGAAG
TCTTTTACAATGATGAACTTTTCATGTCCAAAAACAAAGATATGTGTGAA
GAAGCTAAACTGTTAGATACACCGTACTCGTGTCCTATCAAAGCAGGTTA
CAAATTGGTGATAGAAGATGTTGCAAAGTTGCCATCTTATATTCCAAAGG
GGAAATATCGGATATTTTCAATCGTTTATGatcaagataaaaaagaaatt
ggttgcactttcattgattttaaaacTGGTGAAAATGTTTGAatgaaAGG
TACCCCTACACCCACTGGATGTTTCACTAAACGTAAACTAGCTATCGTCG
GTATAGCCGTCGCTGTGCTTGTACTAGTCGGCTACGTATTACGCGAACGT
TATTTCTACCGCGCGGACGTTTTAATTGCTATTCAAACTAACGTTCAACA
TGCACGAAAAGTGGTCGGCAACAAGATTGGAAATAAAGGGATACttggat
ttttgaattttggcggGAAAAACAACGTCGGTGAAACGGATGATAAGAAA
ATTAAGACAAATGTATGGGATGAATGGATGATTAAACAAACGGCAATGAC
TTCTATTGGAGATATTTATGACCATTGTGACAACACTACACGAACGAAAA
TTGGTAAAGTCGTTCTTCAACCTAAACCAGATGGCAAAGAAGGAGTTCAA
ATCAAATCATATCTCAATCAAACTTACAAATACGAGATTACATCATCTTC
AGTGAAAATGGAAGTCTTTTACAATGATGAACTTTTCATGTCCAAAAACA
AAGATATGTGTGAAGAAGCTAAACTGTTAGATACACCGTACTCGTGTCCT
ATCAAAGCAGGTTACAAATTGGTGATAGAAGATGTTGCAAAGTTGCCATC
TTATATTCCAAAGGGGAAATATCGGATATTTTCAATCGTTTATGatcaag
ataaaaaagaaattggttgcactttcattgattttaaaacTGGTGAAAAT
GTTTGAatgaaAGGTACCCCTACACCCACTGGATGTTTCACTAAACGTAA
ACTAGCTATCGTCGGTATAGCCGTCGCTGTGCTTGTACTAGTCGGCTACG
TATTACGCGAACGTTATTTCTACCGCGCGGACGTTTTAATTGCTATTCAA
ACTAACGTTCAACATGCACGAAAAGTGGTCGGCAACAAGATTGGAAATAA
AGGGATACttggatttttgaattttggcggGAAAAACAACGTCGGTGAAA
CGGATGATAAGAAAATTAAGACAAATGTATGGGATGAATGGATGATTAAA
CAAACGGCAATGACTTCTATTGGAGATATTTATGACCATTGTGACAACAC
TACACGAACGAAAATTGGTAAAGTCGTTCTTCAACCTAAACCAGATGGCA
AAGAAGGAGTTCAAATCAAATCATATCTCAATCAAACTTACAAATACGAG
ATTACATCATCTTCAGTGAAAATGGAAGTCTTTTACAATGATGAACTTTT
CATGTCCAAAAACAAAGATATGTGTGAAGAAGCTAAACTGTTAGATACAC
CGTACTCGTGTCCTATCAAAGCAGGTTACAAATTGGTGATAGAAGATGTT
GCAAAGTTGCCATCTTATATTCCAAAGGGGAAATATCGGATATTTTCAAT
CGTTTATGatcaagataaaaaagaaattggttgcactttcattgatttta
aaacTGGTGAAAATGTTTGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.13799	MSTRG.13799	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13799.1.p1	MSTRG.13799.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.13799.1.p1.exon1	MSTRG.13799.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13799.1.p1.exon2	MSTRG.13799.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13799.1.p1.exon3	MSTRG.13799.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13799.1.p1.exon4	MSTRG.13799.1.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.13799.1.p1.exon5	MSTRG.13799.1.p1.exon5	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000112_pilon	genome	sc0000112_pilon:323366..328839 +

You are here

MSTRG.13799.1.p1 (mRNA) -